Wall clock time and date at job start Tue Mar 31 2020 23:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86806 * 120.00228 * 2 1 4 4 H 1.48502 * 109.47062 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46919 * 299.99677 * 3 2 1 6 6 H 1.48492 * 109.47180 * 59.99719 * 3 2 1 7 7 C 1.38813 * 119.99948 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00034 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00027 * 0.02562 * 7 2 1 10 10 C 1.47368 * 125.57550 * 0.02562 * 9 7 2 11 11 C 1.54869 * 104.81969 * 155.29255 * 10 9 7 12 12 C 1.54938 * 101.78885 * 37.10876 * 11 10 9 13 13 N 1.46498 * 112.84245 * 86.46118 * 12 11 10 14 14 C 1.34779 * 119.99992 * 62.73884 * 13 12 11 15 15 O 1.21668 * 120.00026 * 0.02562 * 14 13 12 16 16 C 1.46925 * 120.00223 * 179.97438 * 14 13 12 17 17 C 1.36364 * 126.82491 * 0.03135 * 16 14 13 18 18 N 1.35571 * 109.74571 * 179.97438 * 17 16 14 19 19 H 0.97005 * 124.71492 * 179.97438 * 18 17 16 20 20 C 1.37699 * 110.56392 * 359.97438 * 18 17 16 21 21 N 1.32662 * 132.94124 * 180.02562 * 20 18 17 22 22 C 1.31615 * 121.68956 * 179.97438 * 21 20 18 23 23 C 1.38585 * 121.53809 * 359.97438 * 22 21 20 24 24 C 1.38338 * 119.32959 * 0.02606 * 23 22 21 25 25 C 1.39358 * 118.05153 * 359.69371 * 24 23 22 26 26 C 1.53581 * 109.08094 * 211.94088 * 12 11 10 27 27 C 1.54225 * 106.71096 * 113.02289 * 26 12 11 28 28 C 1.54756 * 104.15964 * 335.03090 * 27 26 12 29 29 C 1.46982 * 125.57997 * 179.97438 * 9 7 2 30 30 H 1.09000 * 111.81110 * 58.12539 * 29 9 7 31 31 H 0.97006 * 119.99877 * 0.02562 * 1 2 3 32 32 H 1.09000 * 110.36957 * 274.12435 * 10 9 7 33 33 H 1.08994 * 110.36957 * 36.34448 * 10 9 7 34 34 H 1.09000 * 110.97005 * 155.18938 * 11 10 9 35 35 H 1.08998 * 110.96760 * 278.91251 * 11 10 9 36 36 H 0.97003 * 120.00227 * 242.73740 * 13 12 11 37 37 H 1.08000 * 125.12691 * 359.97438 * 17 16 14 38 38 H 1.07994 * 119.22987 * 180.02562 * 22 21 20 39 39 H 1.07994 * 120.33555 * 180.02562 * 23 22 21 40 40 H 1.07990 * 120.97499 * 180.02562 * 24 23 22 41 41 H 1.09002 * 110.02129 * 353.69340 * 26 12 11 42 42 H 1.08997 * 110.01232 * 232.34632 * 26 12 11 43 43 H 1.08997 * 110.49252 * 93.70713 * 27 26 12 44 44 H 1.09007 * 110.48784 * 216.36309 * 27 26 12 45 45 H 1.08999 * 110.66749 * 156.23621 * 28 27 26 46 46 H 1.08991 * 110.67513 * 279.21640 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1413 -2.5313 -0.0005 11 6 -0.4029 -3.9237 -0.6259 12 6 0.7713 -4.7548 -0.0506 13 7 0.4721 -5.3276 1.2642 14 6 -0.5297 -6.2191 1.3987 15 8 -1.1853 -6.5485 0.4282 16 6 -0.8295 -6.7939 2.7172 17 6 -0.1883 -6.5262 3.8905 18 7 -0.7477 -7.2472 4.8931 19 1 -0.4590 -7.2227 5.8188 20 6 -1.7828 -8.0190 4.4145 21 7 -2.6166 -8.8727 4.9941 22 6 -3.5463 -9.5041 4.3092 23 6 -3.7014 -9.3081 2.9461 24 6 -2.8601 -8.4291 2.2879 25 6 -1.8877 -7.7682 3.0359 26 6 1.1763 -5.8266 -1.0732 27 6 2.5904 -5.4578 -1.5659 28 6 2.6848 -3.9302 -1.3364 29 6 1.9331 -3.7264 0.0005 30 1 2.5871 -3.8742 0.8599 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5268 -2.4945 1.0183 33 1 -0.5983 -1.7493 -0.6068 34 1 -1.3616 -4.3250 -0.2973 35 1 -0.3536 -3.8782 -1.7138 36 1 0.9951 -5.0652 2.0380 37 1 0.6403 -5.8428 4.0040 38 1 -4.2042 -10.1903 4.8216 39 1 -4.4713 -9.8362 2.4032 40 1 -2.9576 -8.2559 1.2264 41 1 0.4778 -5.8268 -1.9101 42 1 1.1905 -6.8080 -0.5992 43 1 3.3469 -5.9793 -0.9795 44 1 2.6987 -5.6920 -2.6250 45 1 3.7252 -3.6186 -1.2444 46 1 2.1922 -3.3886 -2.1439 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992508070.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:59 Heat of formation + Delta-G solvation = 67.636298 kcal Electronic energy + Delta-G solvation = -29803.419032 eV Core-core repulsion = 25887.158279 eV Total energy + Delta-G solvation = -3916.260752 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.83329 -39.98414 -38.20751 -37.67369 -34.24444 -33.40254 -33.02880 -31.47742 -30.51061 -29.94642 -29.11489 -26.70891 -25.99841 -23.94805 -23.83674 -23.20896 -22.65003 -20.73363 -19.94792 -19.15837 -18.80517 -18.53283 -17.10304 -16.81437 -16.39201 -16.07907 -15.50028 -15.43994 -14.93376 -14.91879 -14.41880 -14.06391 -13.85098 -13.49662 -13.41027 -13.07694 -13.03261 -12.78775 -12.52627 -12.20339 -12.16192 -11.79049 -11.62556 -11.15243 -10.98284 -10.85564 -10.65817 -10.51934 -10.49333 -10.13664 -10.05926 -9.94451 -9.80675 -9.67365 -9.58699 -9.29154 -8.73398 -8.66238 -8.56103 -8.23586 -6.85436 -5.65029 -3.08317 0.73589 1.14607 1.92022 2.45509 3.37653 3.42178 3.44385 3.46046 3.52592 3.83744 4.27005 4.43236 4.46476 4.58599 4.80463 4.91042 5.01223 5.13220 5.19021 5.28262 5.33569 5.46227 5.52097 5.66770 5.68102 5.85975 5.88626 6.02933 6.07812 6.09874 6.16687 6.17390 6.24713 6.30659 6.38708 6.45142 6.57167 6.62632 6.67083 6.81064 6.82935 6.93721 7.02123 7.16582 7.56336 7.64895 7.77249 7.86120 7.91394 8.37138 8.59123 9.21121 9.82200 10.46470 11.37274 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016288 B = 0.002972 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.650485 B = 9417.494749 C =10134.972476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.010 4.010 3 Si 0.912 3.088 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.219 4.219 8 H 0.077 0.923 9 N -0.596 5.596 10 C 0.152 3.848 11 C -0.141 4.141 12 C 0.165 3.835 13 N -0.702 5.702 14 C 0.588 3.412 15 O -0.538 6.538 16 C -0.210 4.210 17 C 0.116 3.884 18 N -0.567 5.567 19 H 0.423 0.577 20 C 0.275 3.725 21 N -0.499 5.499 22 C 0.134 3.866 23 C -0.200 4.200 24 C -0.016 4.016 25 C -0.108 4.108 26 C -0.110 4.110 27 C -0.125 4.125 28 C -0.130 4.130 29 C 0.162 3.838 30 H 0.046 0.954 31 H 0.251 0.749 32 H 0.009 0.991 33 H 0.107 0.893 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.395 0.605 37 H 0.188 0.812 38 H 0.161 0.839 39 H 0.139 0.861 40 H 0.146 0.854 41 H 0.070 0.930 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.501 -17.675 7.214 19.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.206 4.206 3 Si 0.743 3.257 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.348 4.348 8 H 0.095 0.905 9 N -0.320 5.320 10 C 0.027 3.973 11 C -0.180 4.180 12 C 0.078 3.922 13 N -0.352 5.352 14 C 0.376 3.624 15 O -0.416 6.416 16 C -0.221 4.221 17 C -0.016 4.016 18 N -0.172 5.172 19 H 0.262 0.738 20 C 0.043 3.957 21 N -0.212 5.212 22 C -0.032 4.032 23 C -0.221 4.221 24 C -0.043 4.043 25 C -0.115 4.115 26 C -0.149 4.149 27 C -0.163 4.163 28 C -0.170 4.170 29 C 0.053 3.947 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.027 0.973 33 H 0.125 0.875 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.229 0.771 37 H 0.205 0.795 38 H 0.178 0.822 39 H 0.157 0.843 40 H 0.164 0.836 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.848 -17.742 7.538 19.365 hybrid contribution 0.795 1.215 0.161 1.460 sum -1.053 -16.528 7.699 18.263 Atomic orbital electron populations 1.69816 1.04853 1.24563 1.57517 1.24780 0.95662 0.97648 1.02515 0.86042 0.78631 0.83844 0.77220 1.20583 1.21795 1.21885 1.19072 0.90440 0.82313 1.42949 0.90497 1.44543 1.01845 0.99181 1.86432 1.21971 0.84296 0.93045 0.97939 1.23318 0.96845 0.97911 0.99955 1.21604 0.96759 0.92157 0.81647 1.45707 1.34661 1.43713 1.11089 1.17073 0.79920 0.78646 0.86798 1.90749 1.49961 1.61302 1.39567 1.20154 1.02049 1.06224 0.93690 1.22227 0.97912 0.95240 0.86242 1.41283 1.27952 1.36676 1.11249 0.73838 1.18348 0.92202 0.95468 0.89636 1.66469 1.05452 1.08763 1.40502 1.22436 0.93412 0.95891 0.91434 1.21961 1.02212 1.01958 0.95952 1.21184 0.90746 0.91437 1.00907 1.19439 0.98566 1.00133 0.93319 1.22272 0.96589 0.97736 0.98346 1.22367 0.96443 0.97305 1.00169 1.22939 1.00323 0.93974 0.99738 1.21805 0.91619 0.85921 0.95334 0.93688 0.93822 0.97335 0.87491 0.91419 0.91405 0.77099 0.79532 0.82192 0.84338 0.83648 0.91177 0.92269 0.92417 0.92294 0.92440 0.90731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.30 10.07 55.49 0.56 -25.74 16 2 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 3 Si 0.91 21.58 29.55 -169.99 -5.02 16.56 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.22 -5.80 10.01 -15.06 -0.15 -5.95 16 8 H 0.08 1.97 7.83 -52.48 -0.41 1.56 16 9 N -0.60 -14.31 3.03 -161.10 -0.49 -14.80 16 10 C 0.15 3.67 5.91 -2.58 -0.02 3.65 16 11 C -0.14 -2.87 5.75 -24.72 -0.14 -3.01 16 12 C 0.16 2.89 0.75 -129.31 -0.10 2.79 16 13 N -0.70 -10.75 5.23 -46.51 -0.24 -11.00 16 14 C 0.59 9.39 6.98 -12.74 -0.09 9.30 16 15 O -0.54 -10.08 14.13 5.22 0.07 -10.01 16 16 C -0.21 -2.84 6.27 -103.36 -0.65 -3.49 16 17 C 0.12 1.13 11.34 -16.57 -0.19 0.94 16 18 N -0.57 -5.36 5.97 -11.97 -0.07 -5.43 16 19 H 0.42 2.66 8.96 -40.82 -0.37 2.30 16 20 C 0.28 3.44 8.41 -155.53 -1.31 2.13 16 21 N -0.50 -6.05 10.39 -12.29 -0.13 -6.18 16 22 C 0.13 1.31 11.15 -17.52 -0.20 1.12 16 23 C -0.20 -1.96 10.10 -39.42 -0.40 -2.36 16 24 C -0.02 -0.21 9.97 -39.13 -0.39 -0.60 16 25 C -0.11 -1.48 6.28 -104.93 -0.66 -2.14 16 26 C -0.11 -1.78 5.26 -25.79 -0.14 -1.91 16 27 C -0.12 -1.83 6.84 -25.17 -0.17 -2.00 16 28 C -0.13 -2.29 6.21 -24.90 -0.15 -2.45 16 29 C 0.16 3.11 3.65 -65.57 -0.24 2.87 16 30 H 0.05 0.84 8.01 -51.93 -0.42 0.43 16 31 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.11 2.94 5.82 -51.93 -0.30 2.64 16 34 H 0.07 1.41 6.73 -51.93 -0.35 1.06 16 35 H 0.07 1.38 7.62 -51.93 -0.40 0.99 16 36 H 0.39 5.10 7.40 -40.82 -0.30 4.80 16 37 H 0.19 1.15 7.38 -52.49 -0.39 0.76 16 38 H 0.16 1.01 8.06 -52.49 -0.42 0.58 16 39 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 40 H 0.15 1.89 7.55 -52.49 -0.40 1.49 16 41 H 0.07 1.17 7.37 -51.93 -0.38 0.79 16 42 H 0.06 0.94 7.49 -51.93 -0.39 0.55 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.07 1.47 8.09 -51.93 -0.42 1.05 16 LS Contribution 367.30 15.07 5.54 5.54 Total: -1.00 -33.42 367.30 -11.05 -44.47 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -6.19 Total: 8.07 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -5.08 Total: -1.48 kcal Atomic # 7 Polarization: -62.78 SS G_CDS: -0.37 Total: -63.15 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.07 Total: -10.01 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.42 -11.05 -44.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992508070.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.107 kcal (2) G-P(sol) polarization free energy of solvation -33.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds