Wall clock time and date at job start Tue Mar 31 2020 23:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86806 * 120.00228 * 2 1 4 4 H 1.48502 * 109.47062 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46919 * 299.99677 * 3 2 1 6 6 H 1.48492 * 109.47180 * 59.99719 * 3 2 1 7 7 C 1.38813 * 119.99948 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00034 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00027 * 0.02562 * 7 2 1 10 10 C 1.47368 * 125.57550 * 0.02562 * 9 7 2 11 11 C 1.54869 * 104.81969 * 155.29255 * 10 9 7 12 12 C 1.54938 * 101.78885 * 37.10876 * 11 10 9 13 13 N 1.46498 * 112.84245 * 86.46118 * 12 11 10 14 14 C 1.34779 * 119.99992 * 62.73884 * 13 12 11 15 15 O 1.21668 * 120.00026 * 0.02562 * 14 13 12 16 16 C 1.46925 * 120.00223 * 179.97438 * 14 13 12 17 17 C 1.36364 * 126.82491 * 0.03135 * 16 14 13 18 18 N 1.35571 * 109.74571 * 179.97438 * 17 16 14 19 19 H 0.97005 * 124.71492 * 179.97438 * 18 17 16 20 20 C 1.37699 * 110.56392 * 359.97438 * 18 17 16 21 21 N 1.32662 * 132.94124 * 180.02562 * 20 18 17 22 22 C 1.31615 * 121.68956 * 179.97438 * 21 20 18 23 23 C 1.38585 * 121.53809 * 359.97438 * 22 21 20 24 24 C 1.38338 * 119.32959 * 0.02606 * 23 22 21 25 25 C 1.39358 * 118.05153 * 359.69371 * 24 23 22 26 26 C 1.53581 * 109.08094 * 211.94088 * 12 11 10 27 27 C 1.54225 * 106.71096 * 113.02289 * 26 12 11 28 28 C 1.54756 * 104.15964 * 335.03090 * 27 26 12 29 29 C 1.46982 * 125.57997 * 179.97438 * 9 7 2 30 30 H 1.09000 * 111.81110 * 58.12539 * 29 9 7 31 31 H 0.97006 * 119.99877 * 0.02562 * 1 2 3 32 32 H 1.09000 * 110.36957 * 274.12435 * 10 9 7 33 33 H 1.08994 * 110.36957 * 36.34448 * 10 9 7 34 34 H 1.09000 * 110.97005 * 155.18938 * 11 10 9 35 35 H 1.08998 * 110.96760 * 278.91251 * 11 10 9 36 36 H 0.97003 * 120.00227 * 242.73740 * 13 12 11 37 37 H 1.08000 * 125.12691 * 359.97438 * 17 16 14 38 38 H 1.07994 * 119.22987 * 180.02562 * 22 21 20 39 39 H 1.07994 * 120.33555 * 180.02562 * 23 22 21 40 40 H 1.07990 * 120.97499 * 180.02562 * 24 23 22 41 41 H 1.09002 * 110.02129 * 353.69340 * 26 12 11 42 42 H 1.08997 * 110.01232 * 232.34632 * 26 12 11 43 43 H 1.08997 * 110.49252 * 93.70713 * 27 26 12 44 44 H 1.09007 * 110.48784 * 216.36309 * 27 26 12 45 45 H 1.08999 * 110.66749 * 156.23621 * 28 27 26 46 46 H 1.08991 * 110.67513 * 279.21640 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1413 -2.5313 -0.0005 11 6 -0.4029 -3.9237 -0.6259 12 6 0.7713 -4.7548 -0.0506 13 7 0.4721 -5.3276 1.2642 14 6 -0.5297 -6.2191 1.3987 15 8 -1.1853 -6.5485 0.4282 16 6 -0.8295 -6.7939 2.7172 17 6 -0.1883 -6.5262 3.8905 18 7 -0.7477 -7.2472 4.8931 19 1 -0.4590 -7.2227 5.8188 20 6 -1.7828 -8.0190 4.4145 21 7 -2.6166 -8.8727 4.9941 22 6 -3.5463 -9.5041 4.3092 23 6 -3.7014 -9.3081 2.9461 24 6 -2.8601 -8.4291 2.2879 25 6 -1.8877 -7.7682 3.0359 26 6 1.1763 -5.8266 -1.0732 27 6 2.5904 -5.4578 -1.5659 28 6 2.6848 -3.9302 -1.3364 29 6 1.9331 -3.7264 0.0005 30 1 2.5871 -3.8742 0.8599 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5268 -2.4945 1.0183 33 1 -0.5983 -1.7493 -0.6068 34 1 -1.3616 -4.3250 -0.2973 35 1 -0.3536 -3.8782 -1.7138 36 1 0.9951 -5.0652 2.0380 37 1 0.6403 -5.8428 4.0040 38 1 -4.2042 -10.1903 4.8216 39 1 -4.4713 -9.8362 2.4032 40 1 -2.9576 -8.2559 1.2264 41 1 0.4778 -5.8268 -1.9101 42 1 1.1905 -6.8080 -0.5992 43 1 3.3469 -5.9793 -0.9795 44 1 2.6987 -5.6920 -2.6250 45 1 3.7252 -3.6186 -1.2444 46 1 2.1922 -3.3886 -2.1439 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992508070.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:57 Heat of formation + Delta-G solvation = 46.334134 kcal Electronic energy + Delta-G solvation = -29804.342763 eV Core-core repulsion = 25887.158279 eV Total energy + Delta-G solvation = -3917.184484 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.70212 -41.39068 -39.35738 -38.74127 -36.00264 -34.70684 -33.91880 -33.30229 -31.77526 -31.09482 -30.20919 -28.38412 -27.45409 -25.70028 -24.78919 -24.34274 -23.47714 -22.29688 -21.46095 -20.44611 -20.15157 -19.48096 -18.87240 -17.79041 -17.57680 -17.01203 -16.85966 -16.69392 -16.39128 -15.89587 -15.75876 -15.48958 -15.22838 -14.95813 -14.60520 -14.43538 -14.21896 -13.88649 -13.84588 -13.48629 -13.33843 -13.15045 -12.99264 -12.89832 -12.76526 -12.64236 -12.26395 -11.96303 -11.86125 -11.67136 -11.57004 -11.44074 -11.40391 -11.21162 -10.89488 -10.70577 -10.38915 -9.92597 -9.55532 -9.15748 -8.82997 -7.70808 -5.15436 -0.12835 0.29753 0.96532 1.49315 1.50298 1.59992 1.68393 2.21443 2.44967 2.53658 2.91887 3.38765 3.40451 3.51225 3.64335 3.68621 3.73928 3.99809 4.00981 4.04312 4.17442 4.32064 4.40755 4.42188 4.49449 4.51978 4.57661 4.64320 4.71053 4.84762 4.87436 4.95519 5.01798 5.13254 5.21093 5.22483 5.27174 5.33565 5.36006 5.39340 5.51830 5.55816 5.68667 5.75477 5.83629 5.88626 6.24515 6.34132 6.71352 6.95632 7.14897 7.39376 7.83690 8.47916 9.30573 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016288 B = 0.002972 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.650485 B = 9417.494749 C =10134.972476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.071 4.071 3 Si 0.975 3.025 4 H -0.263 1.263 5 H -0.298 1.298 6 H -0.297 1.297 7 C -0.219 4.219 8 H 0.087 0.913 9 N -0.611 5.611 10 C 0.164 3.836 11 C -0.129 4.129 12 C 0.175 3.825 13 N -0.697 5.697 14 C 0.589 3.411 15 O -0.575 6.575 16 C -0.256 4.256 17 C 0.153 3.847 18 N -0.551 5.551 19 H 0.440 0.560 20 C 0.257 3.743 21 N -0.511 5.511 22 C 0.131 3.869 23 C -0.186 4.186 24 C -0.046 4.046 25 C -0.133 4.133 26 C -0.105 4.105 27 C -0.109 4.109 28 C -0.126 4.126 29 C 0.155 3.845 30 H 0.064 0.936 31 H 0.243 0.757 32 H -0.017 1.017 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.408 0.592 37 H 0.228 0.772 38 H 0.199 0.801 39 H 0.169 0.831 40 H 0.130 0.870 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.083 0.917 44 H 0.075 0.925 45 H 0.067 0.933 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.333 -19.523 8.775 21.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.263 4.263 3 Si 0.805 3.195 4 H -0.187 1.187 5 H -0.226 1.226 6 H -0.224 1.224 7 C -0.348 4.348 8 H 0.105 0.895 9 N -0.335 5.335 10 C 0.038 3.962 11 C -0.169 4.169 12 C 0.088 3.912 13 N -0.348 5.348 14 C 0.379 3.621 15 O -0.456 6.456 16 C -0.267 4.267 17 C 0.019 3.981 18 N -0.157 5.157 19 H 0.282 0.718 20 C 0.025 3.975 21 N -0.224 5.224 22 C -0.034 4.034 23 C -0.206 4.206 24 C -0.073 4.073 25 C -0.140 4.140 26 C -0.144 4.144 27 C -0.147 4.147 28 C -0.166 4.166 29 C 0.048 3.952 30 H 0.081 0.919 31 H 0.053 0.947 32 H 0.001 0.999 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.244 0.756 37 H 0.244 0.756 38 H 0.216 0.784 39 H 0.187 0.813 40 H 0.148 0.852 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.101 0.899 44 H 0.094 0.906 45 H 0.086 0.914 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.029 -19.633 9.145 21.659 hybrid contribution 0.155 1.714 -0.271 1.742 sum 0.184 -17.919 8.874 19.997 Atomic orbital electron populations 1.70077 1.06313 1.24533 1.59309 1.25576 0.96418 1.00859 1.03425 0.85042 0.78349 0.79852 0.76305 1.18713 1.22570 1.22428 1.19448 0.91031 0.83227 1.41119 0.89510 1.44719 1.01809 1.00598 1.86347 1.21600 0.84734 0.93951 0.95891 1.23114 0.97895 0.96402 0.99486 1.21392 0.94436 0.92179 0.83157 1.45567 1.35006 1.43518 1.10690 1.17398 0.79163 0.78066 0.87456 1.90720 1.51168 1.62622 1.41061 1.19963 1.04410 1.08636 0.93697 1.22749 0.96964 0.93518 0.84876 1.41320 1.26826 1.35487 1.12064 0.71816 1.18546 0.93222 0.96299 0.89388 1.66576 1.05929 1.08974 1.40941 1.23128 0.93069 0.95650 0.91579 1.22308 1.01608 1.00489 0.96232 1.21285 0.92203 0.93226 1.00569 1.19743 0.99164 1.00733 0.94393 1.22199 0.97409 0.97300 0.97444 1.22304 0.95845 0.94832 1.01746 1.22807 1.00118 0.96103 0.97549 1.22071 0.92364 0.83837 0.96880 0.91881 0.94737 0.99896 0.91277 0.92369 0.91853 0.75576 0.75603 0.78439 0.81318 0.85209 0.92267 0.91645 0.89867 0.90589 0.91414 0.93422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.64 10.07 21.65 0.22 -56.42 16 2 C -0.07 -3.92 5.49 84.86 0.47 -3.45 16 3 Si 0.98 44.85 29.55 68.60 2.03 46.88 16 4 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 5 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 6 H -0.30 -13.78 7.11 99.48 0.71 -13.08 16 7 C -0.22 -11.60 10.01 84.03 0.84 -10.76 16 8 H 0.09 4.34 7.83 -2.91 -0.02 4.31 16 9 N -0.61 -29.62 3.03 -663.60 -2.01 -31.63 16 10 C 0.16 8.25 5.91 86.85 0.51 8.76 16 11 C -0.13 -5.47 5.75 31.90 0.18 -5.28 16 12 C 0.18 6.08 0.75 5.23 0.00 6.09 16 13 N -0.70 -20.79 5.23 -419.27 -2.19 -22.98 16 14 C 0.59 18.89 6.98 86.52 0.60 19.50 16 15 O -0.58 -22.28 14.13 -4.25 -0.06 -22.34 16 16 C -0.26 -6.80 6.27 -19.05 -0.12 -6.92 16 17 C 0.15 2.65 11.34 83.68 0.95 3.59 16 18 N -0.55 -9.19 5.97 -191.79 -1.15 -10.34 16 19 H 0.44 4.28 8.96 -92.70 -0.83 3.45 16 20 C 0.26 6.11 8.41 133.76 1.12 7.23 16 21 N -0.51 -11.51 10.39 -192.80 -2.00 -13.51 16 22 C 0.13 2.29 11.15 84.81 0.95 3.23 16 23 C -0.19 -3.41 10.10 22.38 0.23 -3.19 16 24 C -0.05 -1.19 9.97 22.56 0.23 -0.97 16 25 C -0.13 -3.68 6.28 -20.06 -0.13 -3.81 16 26 C -0.10 -3.22 5.26 31.20 0.16 -3.06 16 27 C -0.11 -2.89 6.84 31.61 0.22 -2.68 16 28 C -0.13 -4.23 6.21 31.78 0.20 -4.03 16 29 C 0.16 5.80 3.65 46.26 0.17 5.97 16 30 H 0.06 2.18 8.01 -2.39 -0.02 2.16 16 31 H 0.24 14.18 8.31 -92.70 -0.77 13.41 16 32 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 33 H 0.07 4.04 5.82 -2.39 -0.01 4.03 16 34 H 0.06 2.55 6.73 -2.39 -0.02 2.54 16 35 H 0.06 2.69 7.62 -2.39 -0.02 2.68 16 36 H 0.41 9.75 7.40 -92.71 -0.69 9.07 16 37 H 0.23 1.90 7.38 -2.91 -0.02 1.87 16 38 H 0.20 1.79 8.06 -2.91 -0.02 1.77 16 39 H 0.17 1.93 8.06 -2.91 -0.02 1.90 16 40 H 0.13 3.63 7.55 -2.92 -0.02 3.61 16 41 H 0.06 1.96 7.37 -2.39 -0.02 1.94 16 42 H 0.06 1.96 7.49 -2.39 -0.02 1.94 16 43 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 45 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.05 1.86 8.09 -2.39 -0.02 1.84 16 Total: -1.00 -76.55 367.30 0.93 -75.61 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: -0.48 Total: 24.51 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: 6.58 Total: 10.23 kcal Atomic # 7 Polarization: -127.74 SS G_CDS: -7.13 Total: -134.88 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.06 Total: -22.34 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -76.55 0.93 -75.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992508070.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.945 kcal (2) G-P(sol) polarization free energy of solvation -76.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds