Wall clock time and date at job start Tue Mar 31 2020 23:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86791 * 120.00590 * 2 1 4 4 H 1.48503 * 109.46896 * 269.99791 * 3 2 1 5 5 H 1.48501 * 109.47384 * 29.99739 * 3 2 1 6 6 H 1.48505 * 109.47590 * 149.99729 * 3 2 1 7 7 C 1.38818 * 119.99584 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00006 * 197.86122 * 7 2 1 9 9 N 1.36937 * 119.99619 * 17.85535 * 7 2 1 10 10 C 1.46858 * 120.37903 * 208.90749 * 9 7 2 11 11 C 1.53353 * 108.80887 * 236.88352 * 10 9 7 12 12 C 1.53181 * 108.76933 * 308.68173 * 11 10 9 13 13 C 1.52846 * 117.66060 * 269.97659 * 12 11 10 14 14 C 1.52813 * 117.71597 * 201.11823 * 12 11 10 15 15 H 1.09005 * 117.50106 * 0.10994 * 14 12 11 16 16 N 1.46501 * 117.50186 * 215.10674 * 14 12 11 17 17 C 1.34781 * 119.99778 * 155.00323 * 16 14 12 18 18 O 1.21785 * 120.00064 * 359.71360 * 17 16 14 19 19 C 1.41700 * 119.99577 * 179.97438 * 17 16 14 20 20 C 1.39185 * 125.87115 * 179.74804 * 19 17 16 21 21 C 1.38090 * 107.67784 * 179.97438 * 20 19 17 22 22 C 1.39515 * 107.56812 * 359.97438 * 21 20 19 23 23 C 1.40616 * 132.41760 * 179.97438 * 22 21 20 24 24 C 1.36293 * 119.15693 * 180.02562 * 23 22 21 25 25 C 1.39968 * 120.04262 * 0.02899 * 24 23 22 26 26 N 1.30642 * 120.98938 * 359.97438 * 25 24 23 27 27 N 1.37161 * 108.19803 * 359.73850 * 22 21 20 28 28 C 1.53190 * 115.07497 * 55.45122 * 12 11 10 29 29 C 1.46831 * 120.38841 * 28.88866 * 9 7 2 30 30 H 0.97003 * 119.99519 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.57892 * 117.09001 * 10 9 7 32 32 H 1.09001 * 109.58229 * 356.68182 * 10 9 7 33 33 H 1.08996 * 109.58441 * 188.90070 * 11 10 9 34 34 H 1.08997 * 109.58977 * 68.47064 * 11 10 9 35 35 H 1.09000 * 117.50033 * 144.81619 * 13 12 11 36 36 H 1.09000 * 117.50580 * 359.76424 * 13 12 11 37 37 H 0.96999 * 120.00053 * 334.98978 * 16 14 12 38 38 H 1.07999 * 126.16499 * 359.97355 * 20 19 17 39 39 H 1.07994 * 126.21971 * 179.97438 * 21 20 19 40 40 H 1.07999 * 120.42325 * 0.02746 * 23 22 21 41 41 H 1.08002 * 119.98105 * 180.02562 * 24 23 22 42 42 H 1.08001 * 119.50050 * 179.97438 * 25 24 23 43 43 H 1.09000 * 109.58669 * 64.34081 * 28 12 11 44 44 H 1.08994 * 109.58891 * 184.77303 * 28 12 11 45 45 H 1.09008 * 109.58226 * 242.92386 * 29 9 7 46 46 H 1.09005 * 109.58133 * 3.31776 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0462 -1.4001 5 1 1.4479 2.6526 0.7000 6 1 3.5479 1.4400 0.7001 7 6 2.0102 -1.2023 0.0005 8 1 3.0511 -1.2247 0.2874 9 7 1.3748 -2.3597 -0.3626 10 6 1.8049 -3.6490 0.1937 11 6 2.1663 -4.5902 -0.9618 12 6 1.0055 -4.6122 -1.9610 13 6 -0.0889 -5.6589 -1.7544 14 6 0.9055 -5.8073 -2.9080 15 1 1.6659 -6.5835 -2.8210 16 7 0.4109 -5.5565 -4.2641 17 6 0.7529 -6.3856 -5.2702 18 8 1.4772 -7.3402 -5.0530 19 6 0.2741 -6.1432 -6.5816 20 6 0.5529 -6.9134 -7.7070 21 6 -0.1028 -6.3416 -8.7794 22 6 -0.7841 -5.2196 -8.3068 23 6 -1.6034 -4.2699 -8.9426 24 6 -2.1436 -3.2590 -8.2052 25 6 -1.8803 -3.1745 -6.8331 26 7 -1.1196 -4.0547 -6.2386 27 7 -0.5506 -5.1126 -6.9595 28 6 0.5852 -3.2405 -2.4982 29 6 0.2555 -2.3260 -1.3123 30 1 -0.4849 0.8401 -0.0004 31 1 0.9940 -4.0832 0.7785 32 1 2.6773 -3.4996 0.8298 33 1 2.3347 -5.5953 -0.5753 34 1 3.0682 -4.2310 -1.4572 35 1 -1.1111 -5.3746 -2.0044 36 1 0.0169 -6.3376 -0.9081 37 1 -0.1627 -4.7938 -4.4378 38 1 1.1707 -7.7987 -7.7362 39 1 -0.0904 -6.6981 -9.7987 40 1 -1.8022 -4.3407 -10.0018 41 1 -2.7751 -2.5226 -8.6798 42 1 -2.3125 -2.3695 -6.2572 43 1 1.4020 -2.8086 -3.0766 44 1 -0.2954 -3.3500 -3.1311 45 1 -0.6515 -2.6782 -0.8206 46 1 0.1082 -1.3060 -1.6674 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016859623.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:09 Heat of formation + Delta-G solvation = 124.300454 kcal Electronic energy + Delta-G solvation = -29401.222581 eV Core-core repulsion = 25487.418971 eV Total energy + Delta-G solvation = -3913.803610 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.28639 -39.75505 -38.43081 -37.34714 -35.41991 -33.92292 -32.86848 -31.45129 -30.75301 -30.06673 -29.20144 -28.10275 -25.21600 -24.31430 -23.78565 -22.41894 -22.24454 -21.26347 -20.63643 -20.33148 -18.71612 -18.10935 -17.54382 -16.58271 -16.30418 -16.11945 -15.99451 -15.73151 -14.85745 -14.47941 -14.39414 -14.09043 -13.96409 -13.65585 -13.46689 -13.34713 -13.10468 -12.89328 -12.58740 -12.54554 -12.34896 -12.21182 -11.66610 -11.46288 -11.32151 -11.15365 -10.93166 -10.92480 -10.73469 -10.46700 -10.25119 -10.10553 -9.92159 -9.66291 -9.54474 -9.30269 -9.21833 -8.45371 -8.41504 -8.03118 -6.62228 -5.78045 -3.20668 0.07898 0.66211 1.58324 2.02090 2.88919 3.29191 3.35265 3.37623 3.44528 3.46035 3.82994 4.12999 4.24869 4.28262 4.50570 4.52283 4.83712 4.94009 5.05039 5.09567 5.21267 5.23569 5.29021 5.40263 5.41060 5.57409 5.59262 5.67464 5.72914 5.85087 5.95027 6.10479 6.15215 6.18273 6.28499 6.33717 6.43776 6.50549 6.62449 6.67026 6.72661 6.76501 6.87816 7.03526 7.23157 7.36708 7.66097 7.68592 7.80947 8.29171 8.47634 9.23126 9.86870 10.43945 11.29667 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012658 B = 0.003156 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.587860 B = 8870.211055 C =10425.186097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.590 5.590 10 C 0.150 3.850 11 C -0.097 4.097 12 C -0.097 4.097 13 C -0.182 4.182 14 C 0.068 3.932 15 H 0.133 0.867 16 N -0.689 5.689 17 C 0.587 3.413 18 O -0.543 6.543 19 C -0.024 4.024 20 C -0.080 4.080 21 C -0.173 4.173 22 C 0.003 3.997 23 C -0.011 4.011 24 C -0.198 4.198 25 C 0.144 3.856 26 N -0.279 5.279 27 N -0.235 5.235 28 C -0.103 4.103 29 C 0.175 3.825 30 H 0.253 0.747 31 H 0.020 0.980 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.410 0.590 38 H 0.167 0.833 39 H 0.157 0.843 40 H 0.156 0.844 41 H 0.153 0.847 42 H 0.201 0.799 43 H 0.058 0.942 44 H 0.044 0.956 45 H 0.017 0.983 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.174 -9.618 -19.232 22.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.312 5.312 10 C 0.023 3.977 11 C -0.137 4.137 12 C -0.098 4.098 13 C -0.220 4.220 14 C -0.038 4.038 15 H 0.150 0.850 16 N -0.341 5.341 17 C 0.376 3.624 18 O -0.421 6.421 19 C -0.141 4.141 20 C -0.104 4.104 21 C -0.199 4.199 22 C -0.109 4.109 23 C -0.038 4.038 24 C -0.221 4.221 25 C -0.047 4.047 26 N -0.089 5.089 27 N 0.002 4.998 28 C -0.143 4.143 29 C 0.049 3.951 30 H 0.063 0.937 31 H 0.038 0.962 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.109 0.891 36 H 0.116 0.884 37 H 0.250 0.750 38 H 0.184 0.816 39 H 0.175 0.825 40 H 0.174 0.826 41 H 0.170 0.830 42 H 0.217 0.783 43 H 0.077 0.923 44 H 0.062 0.938 45 H 0.036 0.964 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.477 -10.156 -17.831 21.239 hybrid contribution -0.366 1.506 -0.941 1.813 sum -5.843 -8.650 -18.772 21.479 Atomic orbital electron populations 1.70044 1.05244 1.25376 1.53989 1.25036 0.95254 0.98385 1.00997 0.86310 0.79214 0.83739 0.77653 1.21532 1.21798 1.20408 1.19226 0.92886 0.85057 1.40898 0.91749 1.43976 1.37811 1.01589 1.47813 1.20863 0.97424 0.86877 0.92541 1.21689 0.95875 0.99322 0.96811 1.21949 0.98218 0.91182 0.98474 1.23516 0.95847 1.03057 0.99622 1.21885 1.01027 1.02488 0.78402 0.84986 1.45574 1.51264 1.29799 1.07435 1.15699 0.80828 0.82964 0.82904 1.90841 1.37776 1.29816 1.83671 1.19576 1.04624 0.93030 0.96830 1.21343 1.00085 0.99591 0.89425 1.21065 1.02697 0.96044 1.00066 1.19454 1.05730 1.01210 0.84477 1.20955 0.91114 0.90545 1.01146 1.21481 1.04856 1.01479 0.94314 1.24128 0.90808 0.95035 0.94744 1.75522 1.13136 0.98053 1.22167 1.45834 1.30779 1.16758 1.06473 1.21795 0.99134 0.93598 0.99763 1.20732 0.88839 0.98492 0.87012 0.93730 0.96218 0.92645 0.92784 0.91843 0.89097 0.88354 0.75012 0.81599 0.82512 0.82633 0.82967 0.78258 0.92298 0.93754 0.96447 0.89296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.95 11.23 55.49 0.62 -25.33 16 2 C 0.00 0.05 4.88 -17.43 -0.09 -0.04 16 3 Si 0.90 21.66 29.59 -169.99 -5.03 16.63 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.25 -6.91 9.54 -15.06 -0.14 -7.06 16 8 H 0.06 1.75 7.89 -52.49 -0.41 1.34 16 9 N -0.59 -14.87 2.94 -172.25 -0.51 -15.37 16 10 C 0.15 3.19 6.52 -3.66 -0.02 3.17 16 11 C -0.10 -1.78 5.83 -26.46 -0.15 -1.94 16 12 C -0.10 -1.74 1.94 -154.49 -0.30 -2.04 16 13 C -0.18 -2.92 9.86 -26.80 -0.26 -3.19 16 14 C 0.07 1.14 6.14 -68.01 -0.42 0.72 16 15 H 0.13 2.26 7.40 -51.93 -0.38 1.88 16 16 N -0.69 -11.40 5.34 -56.75 -0.30 -11.70 16 17 C 0.59 9.94 7.60 -14.94 -0.11 9.83 16 18 O -0.54 -10.33 16.35 5.11 0.08 -10.24 16 19 C -0.02 -0.35 6.84 -83.75 -0.57 -0.92 16 20 C -0.08 -0.93 10.49 -39.28 -0.41 -1.34 16 21 C -0.17 -1.62 10.92 -39.16 -0.43 -2.05 16 22 C 0.00 0.03 6.80 -84.11 -0.57 -0.54 16 23 C -0.01 -0.07 10.11 -39.39 -0.40 -0.47 16 24 C -0.20 -1.19 10.04 -39.63 -0.40 -1.59 16 25 C 0.14 1.17 11.29 -17.41 -0.20 0.98 16 26 N -0.28 -3.41 9.68 30.61 0.30 -3.12 16 27 N -0.23 -3.06 4.01 -8.28 -0.03 -3.09 16 28 C -0.10 -2.04 5.37 -26.45 -0.14 -2.18 16 29 C 0.18 4.17 5.40 -3.68 -0.02 4.15 16 30 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 1.16 7.92 -51.93 -0.41 0.75 16 33 H 0.05 0.85 8.10 -51.93 -0.42 0.43 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16 37 H 0.41 6.56 4.71 -40.82 -0.19 6.36 16 38 H 0.17 1.69 8.06 -52.49 -0.42 1.27 16 39 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.16 0.49 8.06 -52.49 -0.42 0.07 16 41 H 0.15 0.40 8.06 -52.49 -0.42 -0.02 16 42 H 0.20 0.98 8.06 -52.49 -0.42 0.55 16 43 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.04 0.79 6.75 -51.93 -0.35 0.44 16 45 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 46 H 0.09 2.36 5.93 -51.93 -0.31 2.05 16 LS Contribution 376.18 15.07 5.67 5.67 Total: -1.00 -34.37 376.18 -10.11 -44.47 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -6.27 Total: 6.58 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -4.64 Total: -4.50 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: 0.08 Total: -58.61 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.08 Total: -10.24 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.37 -10.11 -44.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016859623.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.775 kcal (2) G-P(sol) polarization free energy of solvation -34.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds