Wall clock time and date at job start Tue Mar 31 2020 23:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99920 * 2 1 4 4 H 1.48498 * 109.46943 * 239.99342 * 3 2 1 5 5 H 1.48502 * 109.46987 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47431 * 119.99257 * 3 2 1 7 7 C 1.38814 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00295 * 197.85456 * 7 2 1 9 9 N 1.36940 * 119.99832 * 17.86688 * 7 2 1 10 10 C 1.46842 * 120.38121 * 208.90726 * 9 7 2 11 11 C 1.53357 * 108.81171 * 236.87809 * 10 9 7 12 12 C 1.53180 * 108.76430 * 308.68336 * 11 10 9 13 13 C 1.52851 * 117.65619 * 269.97096 * 12 11 10 14 14 C 1.52817 * 117.71345 * 201.11465 * 12 11 10 15 15 H 1.08997 * 117.50630 * 215.12671 * 14 12 11 16 16 N 1.46500 * 117.49836 * 0.14344 * 14 12 11 17 17 C 1.34782 * 119.99677 * 205.00218 * 16 14 12 18 18 O 1.21667 * 119.99795 * 359.97438 * 17 16 14 19 19 C 1.46930 * 119.99906 * 180.02562 * 17 16 14 20 20 C 1.36358 * 126.82880 * 0.02562 * 19 17 16 21 21 N 1.35578 * 109.74896 * 179.97438 * 20 19 17 22 22 H 0.96998 * 124.71784 * 179.97438 * 21 20 19 23 23 C 1.37701 * 110.55844 * 359.97438 * 21 20 19 24 24 N 1.32670 * 132.94319 * 180.02562 * 23 21 20 25 25 C 1.31607 * 121.69008 * 179.97438 * 24 23 21 26 26 C 1.38592 * 121.54206 * 359.97438 * 25 24 23 27 27 C 1.38342 * 119.32276 * 0.28083 * 26 25 24 28 28 C 1.39347 * 118.05365 * 359.46464 * 27 26 25 29 29 C 1.53190 * 115.07897 * 55.44556 * 12 11 10 30 30 C 1.46841 * 120.38416 * 28.87399 * 9 7 2 31 31 H 0.97000 * 119.99906 * 0.02562 * 1 2 3 32 32 H 1.09003 * 109.58787 * 117.07796 * 10 9 7 33 33 H 1.09005 * 109.58132 * 356.67266 * 10 9 7 34 34 H 1.08997 * 109.58802 * 188.89311 * 11 10 9 35 35 H 1.09005 * 109.58637 * 68.46417 * 11 10 9 36 36 H 1.09007 * 117.49951 * 144.81829 * 13 12 11 37 37 H 1.08998 * 117.50528 * 359.76680 * 13 12 11 38 38 H 0.96999 * 120.00477 * 24.99788 * 16 14 12 39 39 H 1.07998 * 125.12022 * 359.97438 * 20 19 17 40 40 H 1.08003 * 119.23246 * 180.02562 * 25 24 23 41 41 H 1.07995 * 120.33925 * 180.02562 * 26 25 24 42 42 H 1.07999 * 120.96864 * 179.71856 * 27 26 25 43 43 H 1.08994 * 109.58501 * 64.34366 * 29 12 11 44 44 H 1.08997 * 109.58606 * 184.76825 * 29 12 11 45 45 H 1.09001 * 109.58252 * 242.92799 * 30 9 7 46 46 H 1.08997 * 109.57824 * 3.33294 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1038 1.6966 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0513 -1.2246 0.2873 9 7 1.3752 -2.3596 -0.3628 10 6 1.8052 -3.6488 0.1934 11 6 2.1668 -4.5900 -0.9622 12 6 1.0061 -4.6119 -1.9615 13 6 -0.0882 -5.6589 -1.7550 14 6 0.9063 -5.8070 -2.9087 15 1 0.5387 -5.6203 -3.9177 16 7 1.9279 -6.8504 -2.7912 17 6 2.2163 -7.6333 -3.8497 18 8 1.6278 -7.4738 -4.9026 19 6 3.2405 -8.6802 -3.7318 20 6 3.9795 -8.9797 -2.6257 21 7 4.8208 -10.0066 -2.9012 22 1 5.4453 -10.3941 -2.2682 23 6 4.6652 -10.4230 -4.2045 24 7 5.2475 -11.3720 -4.9258 25 6 4.9203 -11.5839 -6.1828 26 6 3.9491 -10.8253 -6.8169 27 6 3.3115 -9.8176 -6.1156 28 6 3.6714 -9.6165 -4.7845 29 6 0.5857 -3.2402 -2.4986 30 6 0.2557 -2.3259 -1.3125 31 1 -0.4850 0.8401 -0.0004 32 1 0.9944 -4.0832 0.7782 33 1 2.6777 -3.4995 0.8295 34 1 2.3355 -5.5951 -0.5757 35 1 3.0688 -4.2306 -1.4576 36 1 -1.1104 -5.3745 -2.0050 37 1 0.0177 -6.3376 -0.9087 38 1 2.3968 -6.9778 -1.9517 39 1 3.9058 -8.4750 -1.6738 40 1 5.4197 -12.3677 -6.7329 41 1 3.6955 -11.0162 -7.8492 42 1 2.5540 -9.2074 -6.5849 43 1 1.4024 -2.8082 -3.0768 44 1 -0.2948 -3.3499 -3.1316 45 1 -0.6511 -2.6782 -0.8209 46 1 0.1085 -1.3059 -1.6675 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016977932.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:22 Heat of formation + Delta-G solvation = 84.731630 kcal Electronic energy + Delta-G solvation = -28554.409615 eV Core-core repulsion = 24638.890172 eV Total energy + Delta-G solvation = -3915.519443 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.01555 -39.78007 -38.40357 -37.99703 -35.46989 -33.31884 -33.06312 -31.64740 -30.56523 -30.06646 -29.53168 -28.21110 -24.36946 -24.14356 -23.97010 -22.82749 -22.47256 -21.58476 -20.65601 -19.87254 -18.84748 -18.20575 -17.21230 -16.81226 -16.38055 -16.25151 -15.72665 -15.63083 -15.10620 -14.80867 -14.50864 -14.10605 -14.05051 -13.60307 -13.48836 -13.35372 -13.22494 -13.09020 -12.74140 -12.65442 -12.35219 -12.23510 -11.65242 -11.60681 -11.33199 -10.98082 -10.72679 -10.67631 -10.46061 -10.34283 -10.16664 -9.96468 -9.73227 -9.68834 -9.60420 -9.34694 -8.90105 -8.61485 -8.45251 -8.33381 -6.65020 -5.79614 -3.22927 0.54994 0.98202 1.69643 2.27455 3.07686 3.22544 3.37599 3.43872 3.45168 3.62720 4.09745 4.21725 4.22710 4.38150 4.49013 4.64389 4.84671 4.91871 4.98940 5.07826 5.13470 5.13961 5.21804 5.38540 5.48122 5.51440 5.63187 5.86512 5.91083 5.99163 6.04205 6.05725 6.07856 6.12506 6.27852 6.42743 6.49805 6.58702 6.60723 6.64479 6.69367 6.76415 6.83284 6.94853 7.36707 7.52790 7.62063 7.67041 7.78524 8.25238 8.45852 9.21045 9.84674 10.41132 11.28035 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023231 B = 0.002132 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.998392 B =13130.833167 C =13437.867777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.901 3.099 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.255 4.255 8 H 0.063 0.937 9 N -0.589 5.589 10 C 0.150 3.850 11 C -0.097 4.097 12 C -0.097 4.097 13 C -0.182 4.182 14 C 0.072 3.928 15 H 0.133 0.867 16 N -0.693 5.693 17 C 0.591 3.409 18 O -0.542 6.542 19 C -0.214 4.214 20 C 0.119 3.881 21 N -0.565 5.565 22 H 0.425 0.575 23 C 0.276 3.724 24 N -0.498 5.498 25 C 0.136 3.864 26 C -0.197 4.197 27 C -0.018 4.018 28 C -0.108 4.108 29 C -0.106 4.106 30 C 0.173 3.827 31 H 0.254 0.746 32 H 0.019 0.981 33 H 0.053 0.947 34 H 0.044 0.956 35 H 0.064 0.936 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.397 0.603 39 H 0.188 0.812 40 H 0.163 0.837 41 H 0.140 0.860 42 H 0.146 0.854 43 H 0.060 0.940 44 H 0.052 0.948 45 H 0.018 0.982 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.388 -22.515 -7.575 24.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.384 4.384 8 H 0.081 0.919 9 N -0.311 5.311 10 C 0.023 3.977 11 C -0.136 4.136 12 C -0.098 4.098 13 C -0.221 4.221 14 C -0.033 4.033 15 H 0.151 0.849 16 N -0.342 5.342 17 C 0.379 3.621 18 O -0.420 6.420 19 C -0.225 4.225 20 C -0.014 4.014 21 N -0.170 5.170 22 H 0.263 0.737 23 C 0.044 3.956 24 N -0.210 5.210 25 C -0.030 4.030 26 C -0.218 4.218 27 C -0.044 4.044 28 C -0.115 4.115 29 C -0.145 4.145 30 C 0.047 3.953 31 H 0.064 0.936 32 H 0.037 0.963 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.083 0.917 36 H 0.117 0.883 37 H 0.109 0.891 38 H 0.232 0.768 39 H 0.205 0.795 40 H 0.180 0.820 41 H 0.158 0.842 42 H 0.163 0.837 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.036 0.964 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.569 -22.777 -7.780 25.231 hybrid contribution 0.303 1.060 0.476 1.201 sum 7.872 -21.717 -7.304 24.227 Atomic orbital electron populations 1.70024 1.05270 1.25653 1.53539 1.25048 0.95251 0.98444 1.00835 0.86394 0.78967 0.83414 0.78131 1.21021 1.21641 1.20909 1.19129 0.92790 0.85058 1.41444 0.91881 1.43964 1.37868 1.01455 1.47853 1.20838 0.97350 0.87111 0.92408 1.21627 0.96309 0.98476 0.97212 1.21960 0.97944 0.91304 0.98619 1.23537 0.96209 1.02576 0.99776 1.21893 0.93008 0.91212 0.97220 0.84925 1.45209 1.40356 1.34585 1.14047 1.17107 0.81318 0.80034 0.83621 1.90759 1.52494 1.70588 1.28201 1.20019 1.05053 1.03277 0.94164 1.22196 0.90434 0.89313 0.99421 1.41291 1.35560 1.30168 1.09967 0.73671 1.18345 0.95872 0.95129 0.86223 1.66483 1.28463 1.18159 1.07944 1.22475 0.94361 0.97670 0.88455 1.21992 0.99723 0.98272 1.01854 1.21186 0.96800 0.94966 0.91457 1.19417 0.99214 0.98050 0.94826 1.21879 0.99728 0.93078 0.99835 1.20768 0.88756 0.98713 0.87065 0.93558 0.96334 0.92797 0.93774 0.91733 0.88321 0.89103 0.76823 0.79536 0.82038 0.84199 0.83659 0.92107 0.92972 0.96351 0.89188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.77 11.23 55.49 0.62 -25.15 16 2 C 0.00 0.08 4.88 -17.43 -0.09 0.00 16 3 Si 0.90 21.43 29.59 -169.99 -5.03 16.40 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.25 -6.83 9.54 -15.06 -0.14 -6.98 16 8 H 0.06 1.66 7.89 -52.49 -0.41 1.25 16 9 N -0.59 -14.29 2.94 -172.26 -0.51 -14.79 16 10 C 0.15 2.95 6.52 -3.67 -0.02 2.93 16 11 C -0.10 -1.52 5.37 -26.45 -0.14 -1.66 16 12 C -0.10 -1.54 1.94 -154.49 -0.30 -1.84 16 13 C -0.18 -2.55 9.86 -26.79 -0.26 -2.81 16 14 C 0.07 1.03 6.14 -68.01 -0.42 0.61 16 15 H 0.13 2.08 7.40 -51.93 -0.38 1.69 16 16 N -0.69 -8.39 5.33 -55.11 -0.29 -8.68 16 17 C 0.59 8.08 7.80 -12.74 -0.10 7.98 16 18 O -0.54 -9.29 15.82 5.22 0.08 -9.21 16 19 C -0.21 -2.42 6.27 -103.36 -0.65 -3.07 16 20 C 0.12 0.89 11.34 -16.57 -0.19 0.70 16 21 N -0.57 -4.26 5.97 -11.97 -0.07 -4.33 16 22 H 0.42 1.90 8.96 -40.82 -0.37 1.53 16 23 C 0.28 2.98 8.41 -155.52 -1.31 1.67 16 24 N -0.50 -5.29 10.39 -12.29 -0.13 -5.42 16 25 C 0.14 1.14 11.15 -17.52 -0.20 0.95 16 26 C -0.20 -1.65 10.11 -39.41 -0.40 -2.05 16 27 C -0.02 -0.19 9.97 -39.13 -0.39 -0.58 16 28 C -0.11 -1.30 6.28 -104.93 -0.66 -1.96 16 29 C -0.11 -1.98 5.83 -26.45 -0.15 -2.13 16 30 C 0.17 4.01 5.40 -3.68 -0.02 3.99 16 31 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 1.04 7.92 -51.93 -0.41 0.63 16 34 H 0.04 0.54 6.75 -51.93 -0.35 0.19 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.40 3.72 6.01 -40.82 -0.25 3.47 16 39 H 0.19 0.64 7.38 -52.49 -0.39 0.26 16 40 H 0.16 0.80 8.06 -52.48 -0.42 0.38 16 41 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 42 H 0.15 1.65 7.55 -52.49 -0.40 1.25 16 43 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.05 0.89 8.10 -51.93 -0.42 0.46 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.09 2.36 5.93 -51.93 -0.31 2.05 16 LS Contribution 376.57 15.07 5.67 5.67 Total: -1.00 -34.30 376.57 -11.29 -45.59 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -6.20 Total: 4.19 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -5.44 Total: -4.26 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: -0.38 Total: -58.38 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.08 Total: -9.21 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.30 -11.29 -45.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016977932.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.319 kcal (2) G-P(sol) polarization free energy of solvation -34.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds