Wall clock time and date at job start Tue Mar 31 2020 23:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99920 * 2 1 4 4 H 1.48498 * 109.46943 * 239.99342 * 3 2 1 5 5 H 1.48502 * 109.46987 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47431 * 119.99257 * 3 2 1 7 7 C 1.38814 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00295 * 197.85456 * 7 2 1 9 9 N 1.36940 * 119.99832 * 17.86688 * 7 2 1 10 10 C 1.46842 * 120.38121 * 208.90726 * 9 7 2 11 11 C 1.53357 * 108.81171 * 236.87809 * 10 9 7 12 12 C 1.53180 * 108.76430 * 308.68336 * 11 10 9 13 13 C 1.52851 * 117.65619 * 269.97096 * 12 11 10 14 14 C 1.52817 * 117.71345 * 201.11465 * 12 11 10 15 15 H 1.08997 * 117.50630 * 215.12671 * 14 12 11 16 16 N 1.46500 * 117.49836 * 0.14344 * 14 12 11 17 17 C 1.34782 * 119.99677 * 205.00218 * 16 14 12 18 18 O 1.21667 * 119.99795 * 359.97438 * 17 16 14 19 19 C 1.46930 * 119.99906 * 180.02562 * 17 16 14 20 20 C 1.36358 * 126.82880 * 0.02562 * 19 17 16 21 21 N 1.35578 * 109.74896 * 179.97438 * 20 19 17 22 22 H 0.96998 * 124.71784 * 179.97438 * 21 20 19 23 23 C 1.37701 * 110.55844 * 359.97438 * 21 20 19 24 24 N 1.32670 * 132.94319 * 180.02562 * 23 21 20 25 25 C 1.31607 * 121.69008 * 179.97438 * 24 23 21 26 26 C 1.38592 * 121.54206 * 359.97438 * 25 24 23 27 27 C 1.38342 * 119.32276 * 0.28083 * 26 25 24 28 28 C 1.39347 * 118.05365 * 359.46464 * 27 26 25 29 29 C 1.53190 * 115.07897 * 55.44556 * 12 11 10 30 30 C 1.46841 * 120.38416 * 28.87399 * 9 7 2 31 31 H 0.97000 * 119.99906 * 0.02562 * 1 2 3 32 32 H 1.09003 * 109.58787 * 117.07796 * 10 9 7 33 33 H 1.09005 * 109.58132 * 356.67266 * 10 9 7 34 34 H 1.08997 * 109.58802 * 188.89311 * 11 10 9 35 35 H 1.09005 * 109.58637 * 68.46417 * 11 10 9 36 36 H 1.09007 * 117.49951 * 144.81829 * 13 12 11 37 37 H 1.08998 * 117.50528 * 359.76680 * 13 12 11 38 38 H 0.96999 * 120.00477 * 24.99788 * 16 14 12 39 39 H 1.07998 * 125.12022 * 359.97438 * 20 19 17 40 40 H 1.08003 * 119.23246 * 180.02562 * 25 24 23 41 41 H 1.07995 * 120.33925 * 180.02562 * 26 25 24 42 42 H 1.07999 * 120.96864 * 179.71856 * 27 26 25 43 43 H 1.08994 * 109.58501 * 64.34366 * 29 12 11 44 44 H 1.08997 * 109.58606 * 184.76825 * 29 12 11 45 45 H 1.09001 * 109.58252 * 242.92799 * 30 9 7 46 46 H 1.08997 * 109.57824 * 3.33294 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1038 1.6966 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0513 -1.2246 0.2873 9 7 1.3752 -2.3596 -0.3628 10 6 1.8052 -3.6488 0.1934 11 6 2.1668 -4.5900 -0.9622 12 6 1.0061 -4.6119 -1.9615 13 6 -0.0882 -5.6589 -1.7550 14 6 0.9063 -5.8070 -2.9087 15 1 0.5387 -5.6203 -3.9177 16 7 1.9279 -6.8504 -2.7912 17 6 2.2163 -7.6333 -3.8497 18 8 1.6278 -7.4738 -4.9026 19 6 3.2405 -8.6802 -3.7318 20 6 3.9795 -8.9797 -2.6257 21 7 4.8208 -10.0066 -2.9012 22 1 5.4453 -10.3941 -2.2682 23 6 4.6652 -10.4230 -4.2045 24 7 5.2475 -11.3720 -4.9258 25 6 4.9203 -11.5839 -6.1828 26 6 3.9491 -10.8253 -6.8169 27 6 3.3115 -9.8176 -6.1156 28 6 3.6714 -9.6165 -4.7845 29 6 0.5857 -3.2402 -2.4986 30 6 0.2557 -2.3259 -1.3125 31 1 -0.4850 0.8401 -0.0004 32 1 0.9944 -4.0832 0.7782 33 1 2.6777 -3.4995 0.8295 34 1 2.3355 -5.5951 -0.5757 35 1 3.0688 -4.2306 -1.4576 36 1 -1.1104 -5.3745 -2.0050 37 1 0.0177 -6.3376 -0.9087 38 1 2.3968 -6.9778 -1.9517 39 1 3.9058 -8.4750 -1.6738 40 1 5.4197 -12.3677 -6.7329 41 1 3.6955 -11.0162 -7.8492 42 1 2.5540 -9.2074 -6.5849 43 1 1.4024 -2.8082 -3.0768 44 1 -0.2948 -3.3499 -3.1316 45 1 -0.6511 -2.6782 -0.8209 46 1 0.1085 -1.3059 -1.6675 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016977932.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:20 Heat of formation + Delta-G solvation = 62.880898 kcal Electronic energy + Delta-G solvation = -28555.357134 eV Core-core repulsion = 24638.890172 eV Total energy + Delta-G solvation = -3916.466962 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.70903 -40.91774 -39.53373 -38.80429 -37.07264 -34.51158 -33.93292 -33.32945 -31.68223 -31.23409 -30.42654 -29.71177 -26.21577 -24.95897 -24.76675 -24.00929 -23.49502 -22.95833 -22.04198 -20.83826 -19.77801 -19.52806 -18.35254 -17.93039 -17.42247 -17.17505 -16.83221 -16.56263 -16.39550 -15.79866 -15.67241 -15.49600 -15.33245 -15.07345 -14.83073 -14.63790 -14.25241 -14.11423 -13.88595 -13.73418 -13.38971 -13.26335 -13.07367 -12.99450 -12.83804 -12.54345 -12.51506 -12.26179 -12.00570 -11.75103 -11.45185 -11.35471 -11.26691 -11.15127 -10.69827 -10.45682 -10.41041 -9.69609 -9.56728 -9.15466 -8.59385 -7.84155 -5.29964 -0.14786 0.27599 0.91657 1.46975 1.50071 1.56094 1.67749 2.08985 2.31954 2.52984 2.87769 3.04293 3.30794 3.49241 3.57670 3.68572 3.70724 3.84841 3.92399 4.02262 4.03351 4.15398 4.17450 4.29727 4.42329 4.53173 4.57215 4.69358 4.77152 4.85744 4.88517 4.96238 5.00636 5.06837 5.12508 5.20090 5.21277 5.31535 5.35454 5.36206 5.42510 5.55044 5.60504 5.68208 5.80519 5.82215 6.23799 6.43407 6.61629 6.94657 7.18647 7.29678 7.91976 8.42363 9.20593 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023231 B = 0.002132 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.998392 B =13130.833167 C =13437.867777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.052 4.052 3 Si 0.963 3.037 4 H -0.281 1.281 5 H -0.296 1.296 6 H -0.274 1.274 7 C -0.261 4.261 8 H 0.066 0.934 9 N -0.609 5.609 10 C 0.144 3.856 11 C -0.082 4.082 12 C -0.114 4.114 13 C -0.168 4.168 14 C 0.088 3.912 15 H 0.115 0.885 16 N -0.680 5.680 17 C 0.592 3.408 18 O -0.589 6.589 19 C -0.260 4.260 20 C 0.161 3.839 21 N -0.550 5.550 22 H 0.441 0.559 23 C 0.257 3.743 24 N -0.511 5.511 25 C 0.130 3.870 26 C -0.185 4.185 27 C -0.049 4.049 28 C -0.134 4.134 29 C -0.095 4.095 30 C 0.181 3.819 31 H 0.249 0.751 32 H 0.019 0.981 33 H 0.056 0.944 34 H 0.091 0.909 35 H 0.057 0.943 36 H 0.097 0.903 37 H 0.114 0.886 38 H 0.413 0.587 39 H 0.236 0.764 40 H 0.198 0.802 41 H 0.168 0.832 42 H 0.129 0.871 43 H 0.046 0.954 44 H 0.064 0.936 45 H 0.000 1.000 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.466 -25.078 -6.727 27.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.247 4.247 3 Si 0.791 3.209 4 H -0.207 1.207 5 H -0.222 1.222 6 H -0.199 1.199 7 C -0.391 4.391 8 H 0.084 0.916 9 N -0.332 5.332 10 C 0.019 3.981 11 C -0.121 4.121 12 C -0.116 4.116 13 C -0.207 4.207 14 C -0.019 4.019 15 H 0.133 0.867 16 N -0.330 5.330 17 C 0.382 3.618 18 O -0.471 6.471 19 C -0.271 4.271 20 C 0.027 3.973 21 N -0.156 5.156 22 H 0.283 0.717 23 C 0.025 3.975 24 N -0.224 5.224 25 C -0.035 4.035 26 C -0.206 4.206 27 C -0.075 4.075 28 C -0.141 4.141 29 C -0.135 4.135 30 C 0.055 3.945 31 H 0.058 0.942 32 H 0.037 0.963 33 H 0.074 0.926 34 H 0.110 0.890 35 H 0.075 0.925 36 H 0.115 0.885 37 H 0.132 0.868 38 H 0.251 0.749 39 H 0.252 0.748 40 H 0.214 0.786 41 H 0.186 0.814 42 H 0.147 0.853 43 H 0.065 0.935 44 H 0.082 0.918 45 H 0.018 0.982 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.705 -25.395 -6.897 28.047 hybrid contribution -0.314 1.763 0.199 1.802 sum 9.392 -23.632 -6.698 26.297 Atomic orbital electron populations 1.70174 1.06628 1.25804 1.55330 1.25775 0.95975 1.01452 1.01515 0.85416 0.77640 0.79565 0.78289 1.20742 1.22226 1.19934 1.19470 0.93081 0.86333 1.40224 0.91650 1.44238 1.37858 1.02530 1.48577 1.21033 0.97230 0.85860 0.94015 1.21468 0.95567 0.99795 0.95312 1.21810 0.99517 0.90227 1.00007 1.23624 0.95663 1.01245 1.00133 1.21572 0.93404 0.90532 0.96372 0.86694 1.45006 1.39873 1.33587 1.14538 1.17443 0.81162 0.80183 0.83008 1.90733 1.54340 1.71991 1.30009 1.19841 1.06973 1.04358 0.95937 1.22837 0.87428 0.87428 0.99626 1.41359 1.35364 1.29663 1.09208 0.71666 1.18560 0.96084 0.95408 0.87451 1.66575 1.28752 1.18242 1.08852 1.23111 0.94146 0.98117 0.88093 1.22314 0.98620 0.96760 1.02901 1.21283 0.97768 0.96391 0.92094 1.19750 1.00001 0.98846 0.95469 1.21632 0.99783 0.94162 0.97884 1.20511 0.88163 0.97509 0.88296 0.94203 0.96346 0.92561 0.89042 0.92456 0.88454 0.86797 0.74876 0.74821 0.78577 0.81433 0.85291 0.93527 0.91786 0.98217 0.93024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.19 11.23 21.65 0.24 -54.94 16 2 C -0.05 -2.88 4.88 84.86 0.41 -2.47 16 3 Si 0.96 44.79 29.59 68.60 2.03 46.82 16 4 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 5 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.26 -14.13 9.54 84.03 0.80 -13.33 16 8 H 0.07 3.43 7.89 -2.91 -0.02 3.41 16 9 N -0.61 -29.75 2.94 -698.89 -2.05 -31.80 16 10 C 0.14 5.46 6.52 86.43 0.56 6.02 16 11 C -0.08 -2.35 5.37 30.77 0.17 -2.18 16 12 C -0.11 -3.44 1.94 -52.17 -0.10 -3.54 16 13 C -0.17 -4.28 9.86 30.56 0.30 -3.98 16 14 C 0.09 2.34 6.14 44.94 0.28 2.62 16 15 H 0.12 3.57 7.40 -2.39 -0.02 3.56 16 16 N -0.68 -14.68 5.33 -446.50 -2.38 -17.06 16 17 C 0.59 15.61 7.80 86.52 0.67 16.28 16 18 O -0.59 -20.69 15.82 -4.24 -0.07 -20.76 16 19 C -0.26 -5.49 6.27 -19.05 -0.12 -5.61 16 20 C 0.16 1.80 11.34 83.68 0.95 2.75 16 21 N -0.55 -6.54 5.97 -191.79 -1.15 -7.68 16 22 H 0.44 2.27 8.96 -92.71 -0.83 1.44 16 23 C 0.26 5.10 8.41 133.76 1.13 6.22 16 24 N -0.51 -9.94 10.39 -192.78 -2.00 -11.94 16 25 C 0.13 1.94 11.15 84.81 0.95 2.88 16 26 C -0.19 -2.91 10.11 22.38 0.23 -2.68 16 27 C -0.05 -1.10 9.97 22.56 0.23 -0.87 16 28 C -0.13 -3.15 6.28 -20.06 -0.13 -3.27 16 29 C -0.10 -3.60 5.83 30.77 0.18 -3.42 16 30 C 0.18 8.66 5.40 86.43 0.47 9.12 16 31 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 32 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.06 2.07 7.92 -2.38 -0.02 2.05 16 34 H 0.09 1.75 6.75 -2.39 -0.02 1.73 16 35 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 36 H 0.10 2.54 8.14 -2.38 -0.02 2.52 16 37 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.41 5.85 6.01 -92.71 -0.56 5.29 16 39 H 0.24 0.16 7.38 -2.91 -0.02 0.14 16 40 H 0.20 1.34 8.06 -2.91 -0.02 1.32 16 41 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 42 H 0.13 3.20 7.55 -2.91 -0.02 3.18 16 43 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.06 2.21 8.10 -2.39 -0.02 2.19 16 45 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 46 H 0.05 2.84 5.93 -2.39 -0.01 2.83 16 Total: -1.00 -79.55 376.57 1.24 -78.31 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -0.35 Total: 14.51 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: 6.97 Total: 4.54 kcal Atomic # 7 Polarization: -116.09 SS G_CDS: -7.34 Total: -123.43 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.07 Total: -20.76 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -79.55 1.24 -78.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016977932.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.191 kcal (2) G-P(sol) polarization free energy of solvation -79.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds