Wall clock time and date at job start Tue Mar 31 2020 23:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86806 * 119.99675 * 2 1 4 4 H 1.48502 * 109.46818 * 91.27506 * 3 2 1 5 5 H 1.48503 * 109.46850 * 211.26852 * 3 2 1 6 6 H 1.48493 * 109.47213 * 331.27367 * 3 2 1 7 7 C 1.38813 * 120.00207 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99730 * 16.88009 * 7 2 1 9 9 N 1.36931 * 120.00222 * 196.88022 * 7 2 1 10 10 C 1.46928 * 120.62637 * 31.22889 * 9 7 2 11 11 C 1.53192 * 108.77455 * 126.37279 * 10 9 7 12 12 C 1.53037 * 109.31510 * 54.63188 * 11 10 9 13 13 C 1.53039 * 109.53867 * 298.63378 * 12 11 10 14 14 C 1.46918 * 120.63464 * 210.95231 * 9 7 2 15 15 H 1.08994 * 109.59369 * 113.84100 * 14 9 7 16 16 C 1.53009 * 109.58481 * 353.41322 * 14 9 7 17 17 N 1.46498 * 109.46494 * 60.26718 * 16 14 9 18 18 C 1.34779 * 119.99690 * 180.02562 * 17 16 14 19 19 O 1.21541 * 119.99952 * 359.97438 * 18 17 16 20 20 C 1.47901 * 120.00089 * 179.97438 * 18 17 16 21 21 N 1.32138 * 120.03322 * 359.97438 * 20 18 17 22 22 C 1.31972 * 122.76842 * 180.02562 * 21 20 18 23 23 C 1.37784 * 121.73321 * 0.02562 * 22 21 20 24 24 C 1.40385 * 118.72081 * 359.97438 * 23 22 21 25 25 C 1.40648 * 122.28218 * 180.02562 * 24 23 22 26 26 C 1.36640 * 117.95765 * 179.97438 * 25 24 23 27 27 C 1.39398 * 119.92228 * 0.02562 * 26 25 24 28 28 N 1.31205 * 121.85585 * 359.97189 * 27 26 25 29 29 C 1.33262 * 121.22054 * 359.75569 * 28 27 26 30 30 H 0.96996 * 119.99753 * 359.97438 * 1 2 3 31 31 H 1.09011 * 109.58830 * 246.15365 * 10 9 7 32 32 H 1.09002 * 109.59255 * 6.43916 * 10 9 7 33 33 H 1.08999 * 109.50121 * 174.58686 * 11 10 9 34 34 H 1.09003 * 109.49673 * 294.67769 * 11 10 9 35 35 H 1.08994 * 109.46328 * 58.65783 * 12 11 10 36 36 H 1.09000 * 109.46196 * 178.62954 * 12 11 10 37 37 H 1.08999 * 109.50263 * 181.31342 * 13 12 11 38 38 H 1.08997 * 109.50008 * 301.41764 * 13 12 11 39 39 H 1.09001 * 109.47096 * 180.26371 * 16 14 9 40 40 H 1.08993 * 109.47109 * 300.26757 * 16 14 9 41 41 H 0.97002 * 120.00655 * 359.97438 * 17 16 14 42 42 H 1.07998 * 119.13643 * 180.02562 * 22 21 20 43 43 H 1.07996 * 120.64033 * 179.97438 * 23 22 21 44 44 H 1.08006 * 121.01789 * 0.02562 * 25 24 23 45 45 H 1.07993 * 120.03699 * 180.02562 * 26 25 24 46 46 H 1.07998 * 119.07453 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5246 2.0309 1.3998 5 1 3.5341 1.4482 -0.7267 6 1 1.4344 2.6603 -0.6729 7 6 2.0104 -1.2021 -0.0005 8 1 1.5053 -2.1171 -0.2725 9 7 3.3354 -1.2278 0.3438 10 6 3.8747 -0.2679 1.3167 11 6 4.5963 -1.0416 2.4246 12 6 5.6481 -1.9599 1.7983 13 6 4.9621 -2.9679 0.8735 14 6 4.2436 -2.2196 -0.2480 15 1 4.9779 -1.7143 -0.8753 16 6 3.4402 -3.2118 -1.0914 17 7 2.7477 -2.4926 -2.1634 18 6 1.9737 -3.1671 -3.0367 19 8 1.8508 -4.3720 -2.9350 20 6 1.2740 -2.4411 -4.1187 21 7 1.4068 -1.1311 -4.2295 22 6 0.8073 -0.4297 -5.1731 23 6 -0.0050 -1.0252 -6.1133 24 6 -0.1936 -2.4152 -6.0586 25 6 -1.0059 -3.0999 -6.9802 26 6 -1.1268 -4.4543 -6.8450 27 6 -0.4556 -5.1130 -5.8161 28 7 0.3010 -4.4691 -4.9592 29 6 0.4653 -3.1490 -5.0387 30 1 -0.4849 0.8400 0.0004 31 1 4.5785 0.3999 0.8196 32 1 3.0595 0.3144 1.7461 33 1 5.0830 -0.3392 3.1012 34 1 3.8742 -1.6407 2.9795 35 1 6.3556 -1.3626 1.2233 36 1 6.1797 -2.4936 2.5862 37 1 5.7092 -3.6365 0.4458 38 1 4.2366 -3.5489 1.4428 39 1 4.1151 -3.9494 -1.5256 40 1 2.7085 -3.7160 -0.4603 41 1 2.8454 -1.5310 -2.2444 42 1 0.9573 0.6392 -5.2093 43 1 -0.4873 -0.4340 -6.8776 44 1 -1.5177 -2.5716 -7.7710 45 1 -1.7417 -5.0136 -7.5345 46 1 -0.5612 -6.1837 -5.7217 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024484736.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:33 Heat of formation + Delta-G solvation = 68.850321 kcal Electronic energy + Delta-G solvation = -30068.187036 eV Core-core repulsion = 26151.978928 eV Total energy + Delta-G solvation = -3916.208108 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.16594 -39.02684 -38.02974 -37.56255 -34.16023 -33.62052 -32.97162 -31.53954 -30.96296 -30.65056 -30.12393 -26.36974 -25.30796 -24.48592 -24.01441 -22.92170 -22.61627 -20.78021 -20.07824 -19.37701 -18.51629 -17.52334 -17.43130 -16.53544 -15.96648 -15.57537 -15.27429 -15.03662 -14.71556 -14.56073 -14.26777 -13.85677 -13.69268 -13.62581 -13.56995 -13.16985 -13.14547 -12.92932 -12.53638 -12.39690 -12.17734 -12.04795 -11.85295 -11.57363 -11.23619 -10.77255 -10.71348 -10.59293 -10.37562 -10.13691 -9.89015 -9.79564 -9.72271 -9.48908 -9.39433 -9.32628 -8.87777 -8.60756 -8.40247 -8.04215 -6.86354 -5.88844 -3.29729 0.04477 0.73297 1.72902 2.90494 3.33909 3.49700 3.52106 3.55080 3.69381 4.23274 4.34457 4.41946 4.49631 4.56177 4.65098 4.74981 4.78623 4.89484 5.13494 5.31348 5.33909 5.39642 5.45243 5.47114 5.56295 5.59804 5.70517 5.82001 5.85732 5.94289 6.04216 6.05355 6.16860 6.23596 6.27567 6.36962 6.44226 6.49676 6.52409 6.59657 6.62614 6.74966 6.81600 7.04540 7.28228 7.79674 7.98809 8.02560 8.40761 8.45251 8.97852 9.00937 9.76081 10.13351 11.26018 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014808 B = 0.003877 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.378720 B = 7220.593364 C = 8461.368595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.032 3.968 3 Si 0.883 3.117 4 H -0.290 1.290 5 H -0.271 1.271 6 H -0.306 1.306 7 C -0.259 4.259 8 H 0.093 0.907 9 N -0.604 5.604 10 C 0.125 3.875 11 C -0.136 4.136 12 C -0.108 4.108 13 C -0.129 4.129 14 C 0.164 3.836 15 H 0.037 0.963 16 C 0.135 3.865 17 N -0.674 5.674 18 C 0.559 3.441 19 O -0.519 6.519 20 C 0.159 3.841 21 N -0.432 5.432 22 C 0.085 3.915 23 C -0.136 4.136 24 C -0.083 4.083 25 C -0.067 4.067 26 C -0.159 4.159 27 C 0.122 3.878 28 N -0.414 5.414 29 C 0.103 3.897 30 H 0.260 0.740 31 H 0.023 0.977 32 H 0.072 0.928 33 H 0.050 0.950 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.050 0.950 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.071 0.929 41 H 0.419 0.581 42 H 0.163 0.837 43 H 0.143 0.857 44 H 0.142 0.858 45 H 0.140 0.860 46 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.643 -4.045 -12.474 13.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.167 4.167 3 Si 0.714 3.286 4 H -0.218 1.218 5 H -0.196 1.196 6 H -0.235 1.235 7 C -0.387 4.387 8 H 0.110 0.890 9 N -0.329 5.329 10 C 0.000 4.000 11 C -0.175 4.175 12 C -0.146 4.146 13 C -0.168 4.168 14 C 0.057 3.943 15 H 0.054 0.946 16 C 0.011 3.989 17 N -0.326 5.326 18 C 0.342 3.658 19 O -0.394 6.394 20 C 0.006 3.994 21 N -0.144 5.144 22 C -0.062 4.062 23 C -0.157 4.157 24 C -0.090 4.090 25 C -0.093 4.093 26 C -0.180 4.180 27 C -0.052 4.052 28 N -0.121 5.121 29 C -0.021 4.021 30 H 0.070 0.930 31 H 0.041 0.959 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.258 0.742 42 H 0.181 0.819 43 H 0.161 0.839 44 H 0.160 0.840 45 H 0.157 0.843 46 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.414 -4.630 -11.109 12.510 hybrid contribution -0.777 1.754 -1.233 2.281 sum 2.637 -2.876 -12.341 12.943 Atomic orbital electron populations 1.69812 1.05740 1.26272 1.52891 1.25298 0.95066 0.97296 0.99065 0.86990 0.79762 0.84867 0.76986 1.21838 1.19574 1.23479 1.18958 0.83109 0.94610 1.42035 0.89006 1.44408 1.06501 1.36189 1.45841 1.21382 0.96786 0.92049 0.89794 1.22006 0.98082 0.98818 0.98587 1.21364 0.97490 0.97464 0.98247 1.21867 0.99231 0.97800 0.97927 1.20658 0.91501 0.89955 0.92192 0.94587 1.21311 0.95336 0.93936 0.88331 1.45829 1.46244 1.12810 1.27676 1.17485 0.80218 0.86536 0.81587 1.90793 1.62518 1.12951 1.73178 1.21672 0.94500 0.89008 0.94245 1.67451 1.20203 1.06571 1.20150 1.22620 0.93229 1.00508 0.89812 1.22308 0.99460 0.93343 1.00612 1.18946 0.98345 0.95007 0.96673 1.21364 0.96000 0.94603 0.97333 1.22061 1.00745 0.95325 0.99872 1.23275 0.91360 1.00966 0.89632 1.68309 1.13671 1.07157 1.22996 1.19512 0.97163 0.90817 0.94653 0.92962 0.95909 0.90963 0.93125 0.91810 0.92768 0.93095 0.92492 0.91586 0.92232 0.91046 0.74176 0.81942 0.83943 0.84032 0.84257 0.82061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.29 13.97 55.49 0.78 -26.52 16 2 C 0.03 0.90 5.27 -17.43 -0.09 0.81 16 3 Si 0.88 21.97 24.32 -169.99 -4.13 17.84 16 4 H -0.29 -7.08 6.51 56.52 0.37 -6.71 16 5 H -0.27 -6.56 6.75 56.52 0.38 -6.18 16 6 H -0.31 -7.83 7.11 56.52 0.40 -7.43 16 7 C -0.26 -6.85 7.44 -15.06 -0.11 -6.96 16 8 H 0.09 2.70 6.04 -52.49 -0.32 2.38 16 9 N -0.60 -13.65 2.72 -165.02 -0.45 -14.10 16 10 C 0.13 2.66 4.20 -3.71 -0.02 2.64 16 11 C -0.14 -2.37 6.08 -26.61 -0.16 -2.53 16 12 C -0.11 -1.65 5.89 -26.69 -0.16 -1.81 16 13 C -0.13 -2.07 5.35 -26.83 -0.14 -2.21 16 14 C 0.16 3.11 2.99 -67.82 -0.20 2.90 16 15 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 16 C 0.13 2.65 4.42 -4.04 -0.02 2.63 16 17 N -0.67 -14.32 3.83 -61.23 -0.23 -14.55 16 18 C 0.56 12.29 7.81 -12.30 -0.10 12.19 16 19 O -0.52 -12.24 15.21 5.33 0.08 -12.16 16 20 C 0.16 3.21 6.81 -82.55 -0.56 2.65 16 21 N -0.43 -8.19 9.48 -9.55 -0.09 -8.28 16 22 C 0.08 1.25 11.12 -17.66 -0.20 1.06 16 23 C -0.14 -1.70 9.93 -38.94 -0.39 -2.09 16 24 C -0.08 -1.17 5.75 -106.79 -0.61 -1.79 16 25 C -0.07 -0.70 9.94 -39.25 -0.39 -1.09 16 26 C -0.16 -1.55 10.03 -39.73 -0.40 -1.95 16 27 C 0.12 1.55 11.14 -17.39 -0.19 1.36 16 28 N -0.41 -7.40 8.49 -10.75 -0.09 -7.49 16 29 C 0.10 1.87 6.61 -84.62 -0.56 1.31 16 30 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 31 H 0.02 0.48 7.05 -51.92 -0.37 0.12 16 32 H 0.07 1.70 4.64 -51.93 -0.24 1.46 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.07 1.55 7.42 -51.93 -0.39 1.17 16 41 H 0.42 9.31 6.74 -40.82 -0.27 9.03 16 42 H 0.16 1.92 8.06 -52.49 -0.42 1.50 16 43 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 44 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 45 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 46 H 0.16 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 364.80 15.07 5.50 5.50 Total: -1.00 -34.40 364.80 -9.22 -43.61 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -6.27 Total: 9.02 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: -4.30 Total: 7.12 kcal Atomic # 7 Polarization: -70.84 SS G_CDS: -0.09 Total: -70.93 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.08 Total: -12.16 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.13 Total: 17.84 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.40 -9.22 -43.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024484736.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.462 kcal (2) G-P(sol) polarization free energy of solvation -34.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds