Wall clock time and date at job start Tue Mar 31 2020 23:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86808 * 120.00107 * 2 1 4 4 H 1.48491 * 109.47232 * 240.00158 * 3 2 1 5 5 H 1.48506 * 109.46969 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47127 * 119.99996 * 3 2 1 7 7 C 1.38813 * 120.00297 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00299 * 168.95870 * 7 2 1 9 9 N 1.36939 * 119.99500 * 348.68229 * 7 2 1 10 10 C 1.46919 * 120.63173 * 328.91284 * 9 7 2 11 11 C 1.53188 * 108.77301 * 233.58424 * 10 9 7 12 12 C 1.53048 * 109.31522 * 305.36493 * 11 10 9 13 13 C 1.53039 * 109.53540 * 61.36614 * 12 11 10 14 14 C 1.46929 * 120.62484 * 148.62784 * 9 7 2 15 15 H 1.08993 * 109.58761 * 246.20228 * 14 9 7 16 16 C 1.52995 * 109.58737 * 6.62932 * 14 9 7 17 17 N 1.46498 * 109.47329 * 300.19850 * 16 14 9 18 18 C 1.34778 * 119.99896 * 179.97438 * 17 16 14 19 19 O 1.21548 * 119.99983 * 0.02562 * 18 17 16 20 20 C 1.47893 * 119.99660 * 180.02562 * 18 17 16 21 21 N 1.32137 * 120.03743 * 0.02562 * 20 18 17 22 22 C 1.31982 * 122.76891 * 179.97438 * 21 20 18 23 23 C 1.37770 * 121.72993 * 359.97438 * 22 21 20 24 24 C 1.40385 * 118.73308 * 0.02562 * 23 22 21 25 25 C 1.40638 * 122.29086 * 180.02562 * 24 23 22 26 26 C 1.36637 * 117.95569 * 179.97438 * 25 24 23 27 27 C 1.39391 * 119.92795 * 0.02562 * 26 25 24 28 28 N 1.31204 * 121.85295 * 0.02562 * 27 26 25 29 29 C 1.33258 * 121.22139 * 359.68312 * 28 27 26 30 30 H 0.97001 * 119.99914 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.59012 * 353.36828 * 10 9 7 32 32 H 1.09002 * 109.59021 * 113.65692 * 10 9 7 33 33 H 1.09003 * 109.50404 * 65.31564 * 11 10 9 34 34 H 1.08998 * 109.50121 * 185.38471 * 11 10 9 35 35 H 1.09000 * 109.46174 * 181.38419 * 12 11 10 36 36 H 1.09005 * 109.45793 * 301.35975 * 12 11 10 37 37 H 1.08999 * 109.49954 * 58.58668 * 13 12 11 38 38 H 1.08994 * 109.49455 * 178.65601 * 13 12 11 39 39 H 1.09005 * 109.47339 * 60.20451 * 16 14 9 40 40 H 1.09003 * 109.47007 * 180.19743 * 16 14 9 41 41 H 0.96998 * 119.99854 * 0.02562 * 17 16 14 42 42 H 1.08002 * 119.12731 * 179.97438 * 22 21 20 43 43 H 1.08004 * 120.63688 * 179.97438 * 23 22 21 44 44 H 1.08007 * 121.01923 * 359.97246 * 25 24 23 45 45 H 1.08009 * 120.03496 * 179.97438 * 26 25 24 46 46 H 1.08002 * 119.07401 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0753 -1.2107 -0.1797 9 7 1.3455 -2.3766 0.2317 10 6 0.1646 -2.4083 1.1052 11 6 0.3791 -3.4727 2.1857 12 6 0.7045 -4.8118 1.5198 13 6 1.9956 -4.6796 0.7089 14 6 1.7961 -3.6278 -0.3930 15 1 1.0434 -3.9745 -1.1009 16 6 3.1195 -3.3892 -1.1228 17 7 2.9309 -2.3660 -2.1540 18 6 3.9683 -1.9901 -2.9280 19 8 5.0601 -2.5005 -2.7708 20 6 3.7780 -0.9567 -3.9687 21 7 2.5914 -0.4010 -4.1399 22 6 2.3614 0.5257 -5.0511 23 6 3.3551 0.9784 -5.8911 24 6 4.6431 0.4336 -5.7679 25 6 5.7125 0.8409 -6.5855 26 6 6.9296 0.2519 -6.3888 27 6 7.0801 -0.7207 -5.4016 28 7 6.0785 -1.0975 -4.6424 29 6 4.8674 -0.5586 -4.7789 30 1 -0.4850 0.8401 0.0004 31 1 0.0306 -1.4335 1.5741 32 1 -0.7189 -2.6551 0.5165 33 1 1.2071 -3.1760 2.8296 34 1 -0.5275 -3.5735 2.7823 35 1 0.8334 -5.5765 2.2857 36 1 -0.1130 -5.0957 0.8569 37 1 2.8084 -4.3715 1.3665 38 1 2.2395 -5.6398 0.2543 39 1 3.8720 -3.0523 -0.4098 40 1 3.4501 -4.3177 -1.5883 41 1 2.0596 -1.9584 -2.2793 42 1 1.3680 0.9399 -5.1405 43 1 3.1471 1.7373 -6.6309 44 1 5.5758 1.5960 -7.3455 45 1 7.7739 0.5390 -6.9980 46 1 8.0483 -1.1770 -5.2577 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024484737.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:36 Heat of formation + Delta-G solvation = 41.723923 kcal Electronic energy + Delta-G solvation = -30085.059946 eV Core-core repulsion = 26167.675549 eV Total energy + Delta-G solvation = -3917.384397 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.31297 -40.52005 -39.27799 -38.88275 -35.67412 -34.88696 -34.72948 -32.66481 -32.29792 -31.70584 -31.29203 -27.86581 -26.90078 -25.94003 -25.09800 -24.21413 -23.74441 -22.26453 -21.54325 -20.72302 -19.74944 -18.89656 -18.55521 -18.12020 -17.39778 -17.12436 -16.70536 -16.36838 -15.93548 -15.68662 -15.62735 -15.32559 -15.09115 -15.04505 -14.80963 -14.55821 -14.20046 -14.05189 -14.00020 -13.75533 -13.57989 -13.38417 -13.12228 -12.87645 -12.83345 -12.57009 -12.34182 -12.05341 -11.82424 -11.79489 -11.52114 -11.32493 -11.10340 -11.04011 -10.87313 -10.51047 -10.37213 -10.13665 -9.85772 -9.44435 -8.52508 -7.81921 -5.28291 -1.07962 -0.32549 0.66621 1.34975 1.35963 1.42533 1.67906 2.17170 2.29226 2.47631 3.07531 3.12461 3.25387 3.34434 3.45423 3.59739 3.65936 3.73991 3.94451 4.00763 4.22833 4.23562 4.25938 4.32782 4.43184 4.47008 4.54550 4.58721 4.63300 4.65450 4.76634 4.87553 4.93731 5.00636 5.09590 5.14849 5.22988 5.29995 5.33380 5.39441 5.47752 5.62743 5.64119 5.66047 5.75846 5.87498 6.46246 6.56465 6.76636 6.97998 7.22293 7.33905 7.89968 8.42378 9.22403 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013932 B = 0.003974 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.347535 B = 7044.889343 C = 8187.456686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.024 4.024 3 Si 0.935 3.065 4 H -0.296 1.296 5 H -0.286 1.286 6 H -0.289 1.289 7 C -0.231 4.231 8 H 0.052 0.948 9 N -0.601 5.601 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.102 4.102 13 C -0.120 4.120 14 C 0.160 3.840 15 H 0.031 0.969 16 C 0.139 3.861 17 N -0.679 5.679 18 C 0.550 3.450 19 O -0.549 6.549 20 C 0.098 3.902 21 N -0.456 5.456 22 C 0.048 3.952 23 C -0.093 4.093 24 C -0.106 4.106 25 C -0.051 4.051 26 C -0.150 4.150 27 C 0.126 3.874 28 N -0.483 5.483 29 C 0.083 3.917 30 H 0.248 0.752 31 H 0.053 0.947 32 H 0.000 1.000 33 H 0.045 0.955 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.082 0.918 39 H 0.046 0.954 40 H 0.075 0.925 41 H 0.416 0.584 42 H 0.188 0.812 43 H 0.199 0.801 44 H 0.193 0.807 45 H 0.191 0.809 46 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.082 0.164 -14.529 16.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.221 4.221 3 Si 0.766 3.234 4 H -0.224 1.224 5 H -0.212 1.212 6 H -0.216 1.216 7 C -0.361 4.361 8 H 0.070 0.930 9 N -0.326 5.326 10 C 0.052 3.948 11 C -0.174 4.174 12 C -0.140 4.140 13 C -0.160 4.160 14 C 0.054 3.946 15 H 0.048 0.952 16 C 0.015 3.985 17 N -0.330 5.330 18 C 0.334 3.666 19 O -0.427 6.427 20 C -0.054 4.054 21 N -0.169 5.169 22 C -0.099 4.099 23 C -0.113 4.113 24 C -0.114 4.114 25 C -0.076 4.076 26 C -0.171 4.171 27 C -0.047 4.047 28 N -0.191 5.191 29 C -0.041 4.041 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.018 0.982 33 H 0.063 0.937 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.101 0.899 39 H 0.064 0.936 40 H 0.093 0.907 41 H 0.254 0.746 42 H 0.204 0.796 43 H 0.216 0.784 44 H 0.210 0.790 45 H 0.208 0.792 46 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 7.964 -0.944 -13.199 15.444 hybrid contribution 0.277 2.162 -0.671 2.280 sum 8.241 1.217 -13.870 16.179 Atomic orbital electron populations 1.70065 1.05613 1.25185 1.55806 1.25367 0.95620 0.99492 1.01580 0.85855 0.77945 0.82443 0.77136 1.22367 1.21163 1.21586 1.19027 0.90598 0.84716 1.41807 0.93043 1.44262 1.32581 1.03275 1.52491 1.20616 0.87145 0.97108 0.89911 1.22053 1.00452 0.96597 0.98292 1.21348 0.96986 0.96618 0.98998 1.21957 0.98270 0.98305 0.97439 1.20981 0.92514 0.87983 0.93163 0.95154 1.21322 0.97858 0.90207 0.89137 1.45980 1.13346 1.40202 1.33427 1.18009 0.84529 0.82322 0.81718 1.90729 1.25303 1.56066 1.70622 1.21394 0.89311 0.97711 0.96936 1.67318 1.22159 1.08755 1.18643 1.23185 1.02043 0.93474 0.91239 1.22914 0.90448 0.98802 0.99174 1.19382 0.97659 0.97152 0.97158 1.21972 0.90512 0.98264 0.96858 1.22547 0.99920 0.96027 0.98575 1.23976 0.98000 0.93108 0.89645 1.68238 0.99352 1.26031 1.25526 1.19622 0.92791 0.95801 0.95908 0.94228 0.92809 0.98167 0.93654 0.91585 0.90546 0.92422 0.92741 0.89927 0.93576 0.90705 0.74626 0.79551 0.78424 0.78958 0.79213 0.79645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.16 11.07 21.65 0.24 -52.92 16 2 C -0.02 -1.34 5.04 84.86 0.43 -0.92 16 3 Si 0.94 47.48 29.57 68.60 2.03 49.51 16 4 H -0.30 -15.50 7.11 99.48 0.71 -14.79 16 5 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 6 H -0.29 -14.66 7.11 99.48 0.71 -13.95 16 7 C -0.23 -12.57 6.93 84.03 0.58 -11.99 16 8 H 0.05 2.97 5.87 -2.91 -0.02 2.95 16 9 N -0.60 -29.47 2.97 -674.44 -2.00 -31.48 16 10 C 0.18 8.44 5.25 86.36 0.45 8.89 16 11 C -0.13 -5.03 6.08 30.67 0.19 -4.84 16 12 C -0.10 -3.21 5.88 30.62 0.18 -3.03 16 13 C -0.12 -4.02 5.40 30.82 0.17 -3.85 16 14 C 0.16 6.56 3.03 45.12 0.14 6.70 16 15 H 0.03 1.28 8.14 -2.39 -0.02 1.27 16 16 C 0.14 5.83 4.44 86.38 0.38 6.21 16 17 N -0.68 -31.11 3.82 -465.93 -1.78 -32.89 16 18 C 0.55 25.76 7.81 86.80 0.68 26.44 16 19 O -0.55 -27.44 15.21 -3.87 -0.06 -27.50 16 20 C 0.10 4.14 6.81 42.46 0.29 4.43 16 21 N -0.46 -18.10 9.48 -184.13 -1.75 -19.85 16 22 C 0.05 1.39 11.12 84.56 0.94 2.33 16 23 C -0.09 -2.00 9.93 22.68 0.23 -1.77 16 24 C -0.11 -2.71 5.75 -21.27 -0.12 -2.83 16 25 C -0.05 -0.77 9.94 22.48 0.22 -0.55 16 26 C -0.15 -2.14 10.03 22.17 0.22 -1.92 16 27 C 0.13 2.90 11.14 85.06 0.95 3.85 16 28 N -0.48 -17.28 8.49 -187.91 -1.60 -18.87 16 29 C 0.08 3.01 6.61 40.63 0.27 3.28 16 30 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 31 H 0.05 2.91 6.10 -2.39 -0.01 2.90 16 32 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 33 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.07 2.18 8.14 -2.39 -0.02 2.17 16 35 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 37 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.05 2.11 7.44 -2.38 -0.02 2.10 16 40 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 41 H 0.42 20.34 6.69 -92.71 -0.62 19.72 16 42 H 0.19 4.25 8.06 -2.91 -0.02 4.23 16 43 H 0.20 1.95 8.06 -2.91 -0.02 1.92 16 44 H 0.19 0.99 8.06 -2.91 -0.02 0.97 16 45 H 0.19 0.82 8.06 -2.91 -0.02 0.80 16 46 H 0.19 3.03 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -79.68 371.14 1.66 -78.01 By element: Atomic # 1 Polarization: 25.15 SS G_CDS: 0.39 Total: 25.54 kcal Atomic # 6 Polarization: 24.25 SS G_CDS: 6.19 Total: 30.44 kcal Atomic # 7 Polarization: -149.12 SS G_CDS: -6.89 Total: -156.00 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -0.06 Total: -27.50 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.51 kcal Total: -79.68 1.66 -78.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024484737.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.737 kcal (2) G-P(sol) polarization free energy of solvation -79.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds