Wall clock time and date at job start Tue Mar 31 2020 23:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00455 * 2 1 4 4 H 1.48506 * 109.46719 * 270.00189 * 3 2 1 5 5 H 1.48501 * 109.46793 * 29.99844 * 3 2 1 6 6 H 1.48489 * 109.47333 * 150.00088 * 3 2 1 7 7 C 1.38811 * 119.99400 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 0.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 179.72313 * 7 2 1 10 10 C 1.46504 * 119.99781 * 180.27904 * 9 7 2 11 11 H 1.09001 * 110.44040 * 32.43658 * 10 9 7 12 12 C 1.55947 * 110.48996 * 269.73257 * 10 9 7 13 13 C 1.56398 * 105.78962 * 248.87230 * 12 10 9 14 14 C 1.51000 * 101.59328 * 25.02347 * 13 12 10 15 15 H 1.09003 * 109.72709 * 69.23846 * 14 13 12 16 16 C 1.50351 * 125.55340 * 203.98719 * 14 13 12 17 17 N 1.49212 * 104.86393 * 144.30755 * 16 14 13 18 18 C 1.34776 * 126.06141 * 172.96855 * 17 16 14 19 19 O 1.21642 * 120.00441 * 179.97438 * 18 17 16 20 20 C 1.47284 * 119.99550 * 359.96780 * 18 17 16 21 21 C 1.38441 * 120.02635 * 179.97438 * 20 18 17 22 22 C 1.40651 * 118.26869 * 179.97438 * 21 20 18 23 23 C 1.38258 * 133.39867 * 179.97438 * 22 21 20 24 24 C 1.39680 * 106.99722 * 179.97438 * 23 22 21 25 25 C 1.35651 * 108.08248 * 359.97438 * 24 23 22 26 26 N 1.35914 * 109.05701 * 0.02562 * 25 24 23 27 27 C 1.36901 * 132.42495 * 180.02562 * 26 25 24 28 28 N 1.29795 * 121.48107 * 179.72246 * 27 26 25 29 29 C 1.49702 * 107.88254 * 352.93997 * 17 16 14 30 30 C 1.50293 * 110.49293 * 155.00395 * 10 9 7 31 31 H 1.09001 * 109.99421 * 198.25759 * 30 10 9 32 32 H 0.97009 * 119.99492 * 0.02562 * 1 2 3 33 33 H 0.97000 * 119.99808 * 0.27579 * 9 7 2 34 34 H 1.09000 * 110.18730 * 7.95849 * 12 10 9 35 35 H 1.09000 * 110.18179 * 129.79550 * 12 10 9 36 36 H 1.08995 * 111.00692 * 266.94409 * 13 12 10 37 37 H 1.08997 * 111.03286 * 143.11333 * 13 12 10 38 38 H 1.09007 * 110.35675 * 25.46544 * 16 14 13 39 39 H 1.08995 * 110.45453 * 263.20530 * 16 14 13 40 40 H 1.07996 * 120.86364 * 359.97438 * 21 20 18 41 41 H 1.07994 * 126.50465 * 359.97292 * 23 22 21 42 42 H 1.08003 * 125.96415 * 179.97438 * 24 23 22 43 43 H 1.07997 * 125.47104 * 180.02562 * 25 24 23 44 44 H 1.08002 * 119.26298 * 0.02562 * 27 26 25 45 45 H 1.09000 * 110.84547 * 216.66722 * 29 17 16 46 46 H 1.08998 * 111.01935 * 93.13449 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3796 -1.2023 -0.0052 10 6 4.1120 -2.4711 -0.0108 11 1 3.5534 -3.2306 -0.5578 12 6 4.3969 -2.9434 1.4479 13 6 5.9428 -2.8106 1.6439 14 6 6.2867 -1.7445 0.6313 15 1 5.8780 -0.7864 0.9525 16 6 7.6350 -1.5433 -0.0027 17 7 7.3403 -1.1104 -1.3999 18 6 8.2432 -0.6864 -2.3063 19 8 7.8794 -0.3587 -3.4198 20 6 9.6703 -0.6196 -1.9483 21 6 10.5983 -0.1847 -2.8790 22 6 11.9512 -0.1350 -2.4976 23 6 13.1100 0.2374 -3.1534 24 6 14.1618 0.0727 -2.2492 25 6 13.6455 -0.3861 -1.0817 26 7 12.2994 -0.5193 -1.2137 27 6 11.3234 -0.9367 -0.3492 28 7 10.0755 -0.9767 -0.7040 29 6 5.8640 -1.2311 -1.6168 30 6 5.4776 -2.2877 -0.6110 31 1 5.8864 -3.2532 -0.9092 32 1 -0.4850 0.8402 -0.0004 33 1 3.8646 -0.3622 -0.0056 34 1 3.8714 -2.3060 2.1590 35 1 4.0896 -3.9816 1.5738 36 1 6.4481 -3.7479 1.4112 37 1 6.1821 -2.4808 2.6548 38 1 8.1960 -2.4780 -0.0057 39 1 8.1922 -0.7691 0.5247 40 1 10.2914 0.1088 -3.8719 41 1 13.1873 0.5890 -4.1716 42 1 15.2044 0.2752 -2.4453 43 1 14.2130 -0.6097 -0.1905 44 1 11.5973 -1.2349 0.6520 45 1 5.6470 -1.5640 -2.6318 46 1 5.3591 -0.2891 -1.4031 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026291595.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:04 Heat of formation + Delta-G solvation = 99.620814 kcal Electronic energy + Delta-G solvation = -29291.021084 eV Core-core repulsion = 25376.147284 eV Total energy + Delta-G solvation = -3914.873800 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.77262 -40.61267 -38.99589 -37.56494 -35.34588 -33.50890 -33.37214 -31.43698 -31.11095 -29.92603 -28.83233 -28.38373 -25.78851 -24.77819 -24.07262 -22.93214 -22.46120 -21.56236 -20.06902 -19.88069 -19.03272 -18.67541 -17.82408 -17.33360 -16.49254 -16.24281 -16.07981 -15.63147 -15.24760 -14.95536 -14.69540 -14.52479 -14.18786 -13.89389 -13.83200 -13.30467 -13.01418 -12.86241 -12.70782 -12.66298 -12.59260 -12.35409 -11.98224 -11.88563 -11.41029 -11.10091 -10.98847 -10.89724 -10.71743 -10.69174 -10.41122 -10.35880 -10.11545 -9.90103 -9.65321 -9.55642 -9.39012 -8.93784 -8.62390 -7.90458 -7.27762 -5.77314 -3.12855 0.05471 0.77438 2.12293 2.42395 2.52326 2.80442 3.37039 3.40529 3.44501 3.46247 3.55899 4.03346 4.16392 4.27696 4.38740 4.58773 4.74885 4.81684 4.90734 5.01877 5.09826 5.18219 5.24600 5.29953 5.46740 5.50657 5.52837 5.61478 5.64690 5.66866 5.75128 5.78462 5.92245 5.95682 6.05388 6.11849 6.17009 6.22975 6.27210 6.30502 6.37725 6.41483 6.55407 6.65652 6.72414 6.95804 7.22516 7.51110 7.99349 8.08847 8.42046 9.19818 9.92537 10.11723 11.41013 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019080 B = 0.002712 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.172157 B =10320.280806 C =11008.292733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.879 3.121 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.242 4.242 8 H 0.092 0.908 9 N -0.743 5.743 10 C 0.201 3.799 11 H 0.066 0.934 12 C -0.144 4.144 13 C -0.094 4.094 14 C -0.135 4.135 15 H 0.082 0.918 16 C 0.141 3.859 17 N -0.607 5.607 18 C 0.589 3.411 19 O -0.540 6.540 20 C 0.016 3.984 21 C -0.039 4.039 22 C 0.026 3.974 23 C -0.171 4.171 24 C -0.147 4.147 25 C -0.028 4.028 26 N -0.388 5.388 27 C 0.303 3.697 28 N -0.459 5.459 29 C 0.130 3.870 30 C -0.125 4.125 31 H 0.080 0.920 32 H 0.259 0.741 33 H 0.360 0.640 34 H 0.076 0.924 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.163 0.837 41 H 0.152 0.848 42 H 0.152 0.848 43 H 0.177 0.823 44 H 0.208 0.792 45 H 0.082 0.918 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.625 -3.999 0.800 30.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.189 4.189 3 Si 0.709 3.291 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.372 4.372 8 H 0.110 0.890 9 N -0.385 5.385 10 C 0.090 3.910 11 H 0.084 0.916 12 C -0.185 4.185 13 C -0.133 4.133 14 C -0.154 4.154 15 H 0.100 0.900 16 C 0.019 3.981 17 N -0.340 5.340 18 C 0.377 3.623 19 O -0.418 6.418 20 C -0.101 4.101 21 C -0.062 4.062 22 C -0.079 4.079 23 C -0.197 4.197 24 C -0.169 4.169 25 C -0.159 4.159 26 N -0.061 5.061 27 C 0.021 3.979 28 N -0.172 5.172 29 C 0.010 3.990 30 C -0.145 4.145 31 H 0.098 0.902 32 H 0.069 0.931 33 H 0.194 0.806 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.181 0.819 41 H 0.170 0.830 42 H 0.170 0.830 43 H 0.194 0.806 44 H 0.224 0.776 45 H 0.101 0.899 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 29.245 -4.184 0.782 29.553 hybrid contribution 1.229 1.554 -0.332 2.009 sum 30.474 -2.631 0.449 30.590 Atomic orbital electron populations 1.69698 1.05059 1.25772 1.57519 1.24651 0.95182 0.97056 1.02056 0.86648 0.79171 0.85329 0.77955 1.20934 1.21712 1.20486 1.19084 0.80519 0.94691 1.42934 0.89049 1.42807 1.03976 1.01814 1.89935 1.20107 0.88622 0.89699 0.92585 0.91606 1.23814 0.93496 1.00963 1.00208 1.21701 0.97240 0.96840 0.97470 1.22373 0.95281 1.00825 0.96920 0.89979 1.21273 0.95769 1.00427 0.80607 1.49644 1.07707 1.63323 1.13293 1.17016 0.83438 0.77987 0.83905 1.90839 1.79864 1.50304 1.20811 1.20784 0.94736 1.04673 0.89953 1.21686 0.88797 0.94413 1.01265 1.18892 0.94704 1.08478 0.85792 1.21184 0.89824 1.07955 1.00745 1.21076 0.99722 1.03474 0.92662 1.22002 0.80628 1.11209 1.02096 1.43199 1.08135 1.43036 1.11682 1.24894 0.82341 0.94877 0.95782 1.68466 1.13686 1.17180 1.17830 1.21467 0.77920 0.99600 1.00060 1.22531 0.98799 0.98291 0.94856 0.90164 0.93069 0.80619 0.90491 0.92398 0.91883 0.91987 0.91163 0.90298 0.81906 0.83043 0.83013 0.80617 0.77581 0.89933 0.90481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.17 13.97 55.49 0.78 -28.40 16 2 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 3 Si 0.88 22.27 27.73 -169.99 -4.71 17.56 16 4 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 5 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 6 H -0.28 -6.65 6.52 56.52 0.37 -6.28 16 7 C -0.24 -6.66 10.44 -15.06 -0.16 -6.82 16 8 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 9 N -0.74 -16.85 4.61 -53.20 -0.25 -17.10 16 10 C 0.20 3.64 3.46 -67.70 -0.23 3.40 16 11 H 0.07 1.24 8.09 -51.93 -0.42 0.82 16 12 C -0.14 -2.27 6.73 -23.33 -0.16 -2.43 16 13 C -0.09 -1.19 6.71 -25.91 -0.17 -1.36 16 14 C -0.13 -1.87 2.73 -90.27 -0.25 -2.12 16 15 H 0.08 1.32 7.64 -51.93 -0.40 0.92 16 16 C 0.14 1.80 5.25 -3.86 -0.02 1.78 16 17 N -0.61 -9.35 3.43 -172.87 -0.59 -9.94 16 18 C 0.59 9.49 7.84 -12.58 -0.10 9.39 16 19 O -0.54 -10.22 16.67 5.24 0.09 -10.13 16 20 C 0.02 0.21 6.75 -82.43 -0.56 -0.34 16 21 C -0.04 -0.46 9.72 -38.60 -0.38 -0.83 16 22 C 0.03 0.26 6.78 -83.95 -0.57 -0.31 16 23 C -0.17 -1.40 10.98 -39.04 -0.43 -1.83 16 24 C -0.15 -0.93 10.80 -39.97 -0.43 -1.36 16 25 C -0.03 -0.17 11.61 -16.67 -0.19 -0.36 16 26 N -0.39 -3.21 2.95 -62.17 -0.18 -3.40 16 27 C 0.30 2.33 12.16 -89.23 -1.09 1.25 16 28 N -0.46 -4.95 6.96 -10.42 -0.07 -5.02 16 29 C 0.13 2.19 6.53 -3.31 -0.02 2.17 16 30 C -0.12 -1.93 2.60 -90.34 -0.23 -2.16 16 31 H 0.08 1.14 8.13 -51.93 -0.42 0.71 16 32 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 33 H 0.36 8.21 4.05 -40.82 -0.17 8.04 16 34 H 0.08 1.39 7.98 -51.93 -0.41 0.98 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.82 7.92 -51.93 -0.41 0.41 16 39 H 0.08 0.97 7.09 -51.93 -0.37 0.60 16 40 H 0.16 1.81 7.66 -52.49 -0.40 1.41 16 41 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.15 0.57 8.06 -52.48 -0.42 0.15 16 43 H 0.18 0.42 8.06 -52.49 -0.42 0.00 16 44 H 0.21 0.64 8.06 -52.49 -0.42 0.22 16 45 H 0.08 1.43 8.09 -51.93 -0.42 1.01 16 46 H 0.08 1.44 6.96 -51.93 -0.36 1.08 16 LS Contribution 370.28 15.07 5.58 5.58 Total: -1.00 -34.54 370.28 -10.78 -45.32 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -6.33 Total: 7.38 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -5.08 Total: -1.85 kcal Atomic # 7 Polarization: -63.54 SS G_CDS: -0.32 Total: -63.86 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.09 Total: -10.13 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.71 Total: 17.56 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.54 -10.78 -45.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026291595.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.940 kcal (2) G-P(sol) polarization free energy of solvation -34.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds