Wall clock time and date at job start Tue Mar 31 2020 23:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00455 * 2 1 4 4 H 1.48506 * 109.46719 * 270.00189 * 3 2 1 5 5 H 1.48501 * 109.46793 * 29.99844 * 3 2 1 6 6 H 1.48489 * 109.47333 * 150.00088 * 3 2 1 7 7 C 1.38811 * 119.99400 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 0.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 179.72313 * 7 2 1 10 10 C 1.46504 * 119.99781 * 180.27904 * 9 7 2 11 11 H 1.09001 * 110.44040 * 32.43658 * 10 9 7 12 12 C 1.55947 * 110.48996 * 269.73257 * 10 9 7 13 13 C 1.56398 * 105.78962 * 248.87230 * 12 10 9 14 14 C 1.51000 * 101.59328 * 25.02347 * 13 12 10 15 15 H 1.09003 * 109.72709 * 69.23846 * 14 13 12 16 16 C 1.50351 * 125.55340 * 203.98719 * 14 13 12 17 17 N 1.49212 * 104.86393 * 144.30755 * 16 14 13 18 18 C 1.34776 * 126.06141 * 172.96855 * 17 16 14 19 19 O 1.21642 * 120.00441 * 179.97438 * 18 17 16 20 20 C 1.47284 * 119.99550 * 359.96780 * 18 17 16 21 21 C 1.38441 * 120.02635 * 179.97438 * 20 18 17 22 22 C 1.40651 * 118.26869 * 179.97438 * 21 20 18 23 23 C 1.38258 * 133.39867 * 179.97438 * 22 21 20 24 24 C 1.39680 * 106.99722 * 179.97438 * 23 22 21 25 25 C 1.35651 * 108.08248 * 359.97438 * 24 23 22 26 26 N 1.35914 * 109.05701 * 0.02562 * 25 24 23 27 27 C 1.36901 * 132.42495 * 180.02562 * 26 25 24 28 28 N 1.29795 * 121.48107 * 179.72246 * 27 26 25 29 29 C 1.49702 * 107.88254 * 352.93997 * 17 16 14 30 30 C 1.50293 * 110.49293 * 155.00395 * 10 9 7 31 31 H 1.09001 * 109.99421 * 198.25759 * 30 10 9 32 32 H 0.97009 * 119.99492 * 0.02562 * 1 2 3 33 33 H 0.97000 * 119.99808 * 0.27579 * 9 7 2 34 34 H 1.09000 * 110.18730 * 7.95849 * 12 10 9 35 35 H 1.09000 * 110.18179 * 129.79550 * 12 10 9 36 36 H 1.08995 * 111.00692 * 266.94409 * 13 12 10 37 37 H 1.08997 * 111.03286 * 143.11333 * 13 12 10 38 38 H 1.09007 * 110.35675 * 25.46544 * 16 14 13 39 39 H 1.08995 * 110.45453 * 263.20530 * 16 14 13 40 40 H 1.07996 * 120.86364 * 359.97438 * 21 20 18 41 41 H 1.07994 * 126.50465 * 359.97292 * 23 22 21 42 42 H 1.08003 * 125.96415 * 179.97438 * 24 23 22 43 43 H 1.07997 * 125.47104 * 180.02562 * 25 24 23 44 44 H 1.08002 * 119.26298 * 0.02562 * 27 26 25 45 45 H 1.09000 * 110.84547 * 216.66722 * 29 17 16 46 46 H 1.08998 * 111.01935 * 93.13449 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3796 -1.2023 -0.0052 10 6 4.1120 -2.4711 -0.0108 11 1 3.5534 -3.2306 -0.5578 12 6 4.3969 -2.9434 1.4479 13 6 5.9428 -2.8106 1.6439 14 6 6.2867 -1.7445 0.6313 15 1 5.8780 -0.7864 0.9525 16 6 7.6350 -1.5433 -0.0027 17 7 7.3403 -1.1104 -1.3999 18 6 8.2432 -0.6864 -2.3063 19 8 7.8794 -0.3587 -3.4198 20 6 9.6703 -0.6196 -1.9483 21 6 10.5983 -0.1847 -2.8790 22 6 11.9512 -0.1350 -2.4976 23 6 13.1100 0.2374 -3.1534 24 6 14.1618 0.0727 -2.2492 25 6 13.6455 -0.3861 -1.0817 26 7 12.2994 -0.5193 -1.2137 27 6 11.3234 -0.9367 -0.3492 28 7 10.0755 -0.9767 -0.7040 29 6 5.8640 -1.2311 -1.6168 30 6 5.4776 -2.2877 -0.6110 31 1 5.8864 -3.2532 -0.9092 32 1 -0.4850 0.8402 -0.0004 33 1 3.8646 -0.3622 -0.0056 34 1 3.8714 -2.3060 2.1590 35 1 4.0896 -3.9816 1.5738 36 1 6.4481 -3.7479 1.4112 37 1 6.1821 -2.4808 2.6548 38 1 8.1960 -2.4780 -0.0057 39 1 8.1922 -0.7691 0.5247 40 1 10.2914 0.1088 -3.8719 41 1 13.1873 0.5890 -4.1716 42 1 15.2044 0.2752 -2.4453 43 1 14.2130 -0.6097 -0.1905 44 1 11.5973 -1.2349 0.6520 45 1 5.6470 -1.5640 -2.6318 46 1 5.3591 -0.2891 -1.4031 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026291595.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:03 Heat of formation + Delta-G solvation = 79.539277 kcal Electronic energy + Delta-G solvation = -29291.891885 eV Core-core repulsion = 25376.147284 eV Total energy + Delta-G solvation = -3915.744601 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.35812 -41.82360 -40.13402 -38.34843 -36.82981 -35.10746 -34.19482 -33.01813 -32.08017 -31.06904 -30.20995 -29.18435 -27.17734 -25.56100 -24.95257 -24.76833 -23.48614 -22.11935 -21.17478 -20.82632 -20.56908 -19.82988 -19.34266 -18.28461 -17.59207 -17.04840 -16.95719 -16.62882 -16.52339 -16.17052 -15.96297 -15.59073 -15.45171 -15.23436 -15.02558 -14.63577 -14.17600 -14.02859 -13.60921 -13.55886 -13.52951 -13.35085 -13.32157 -13.26357 -12.99108 -12.72990 -12.35818 -12.24670 -11.95733 -11.92873 -11.72227 -11.67852 -11.59704 -11.44378 -11.01099 -10.99679 -10.83321 -9.92867 -9.84106 -9.29741 -8.56144 -8.03473 -5.34502 -0.70110 0.17597 1.31085 1.34899 1.39915 1.53846 1.60515 1.67774 1.95617 2.44307 2.58481 2.81559 2.97304 3.28792 3.41879 3.56903 3.59971 3.82748 3.87712 3.90022 4.03601 4.14739 4.26680 4.28878 4.41781 4.43010 4.47547 4.57320 4.60156 4.61993 4.71394 4.76957 4.81828 4.92218 4.98740 5.04683 5.14924 5.17575 5.21944 5.25380 5.34901 5.42677 5.50872 5.62201 5.72805 5.80434 6.18761 6.22022 6.32986 6.57623 6.93770 7.07371 7.84959 8.01971 9.18365 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019080 B = 0.002712 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.172157 B =10320.280806 C =11008.292733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.061 4.061 3 Si 0.941 3.059 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.257 1.257 7 C -0.218 4.218 8 H 0.064 0.936 9 N -0.746 5.746 10 C 0.188 3.812 11 H 0.054 0.946 12 C -0.139 4.139 13 C -0.078 4.078 14 C -0.121 4.121 15 H 0.058 0.942 16 C 0.151 3.849 17 N -0.609 5.609 18 C 0.581 3.419 19 O -0.586 6.586 20 C -0.012 4.012 21 C -0.040 4.040 22 C -0.016 4.016 23 C -0.167 4.167 24 C -0.158 4.158 25 C 0.001 3.999 26 N -0.398 5.398 27 C 0.321 3.679 28 N -0.482 5.482 29 C 0.129 3.871 30 C -0.122 4.122 31 H 0.102 0.898 32 H 0.256 0.744 33 H 0.361 0.639 34 H 0.051 0.949 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.150 0.850 41 H 0.160 0.840 42 H 0.180 0.820 43 H 0.221 0.779 44 H 0.258 0.742 45 H 0.067 0.933 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 36.108 -4.823 3.159 36.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.252 4.252 3 Si 0.769 3.231 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.181 1.181 7 C -0.349 4.349 8 H 0.082 0.918 9 N -0.389 5.389 10 C 0.079 3.921 11 H 0.072 0.928 12 C -0.179 4.179 13 C -0.116 4.116 14 C -0.140 4.140 15 H 0.076 0.924 16 C 0.031 3.969 17 N -0.340 5.340 18 C 0.371 3.629 19 O -0.468 6.468 20 C -0.127 4.127 21 C -0.063 4.063 22 C -0.120 4.120 23 C -0.193 4.193 24 C -0.180 4.180 25 C -0.131 4.131 26 N -0.072 5.072 27 C 0.039 3.961 28 N -0.194 5.194 29 C 0.007 3.993 30 C -0.142 4.142 31 H 0.121 0.879 32 H 0.065 0.935 33 H 0.195 0.805 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.111 0.889 37 H 0.099 0.901 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.168 0.832 41 H 0.177 0.823 42 H 0.198 0.802 43 H 0.238 0.762 44 H 0.274 0.726 45 H 0.085 0.915 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 34.783 -5.051 3.167 35.290 hybrid contribution -0.238 1.736 -1.120 2.079 sum 34.545 -3.315 2.047 34.764 Atomic orbital electron populations 1.69858 1.06821 1.26325 1.60351 1.25343 0.95935 1.00530 1.03436 0.85622 0.78729 0.81022 0.77683 1.21424 1.22038 1.18140 1.19071 0.82572 0.93385 1.39909 0.91844 1.42815 1.02361 1.03742 1.89981 1.20405 0.89434 0.87435 0.94779 0.92823 1.23632 0.96248 1.01120 0.96894 1.21647 0.94232 0.97665 0.98038 1.22351 0.95343 1.00076 0.96207 0.92362 1.21337 0.95081 1.01675 0.78801 1.49708 1.06668 1.63233 1.14427 1.17601 0.84955 0.76993 0.83326 1.90790 1.80985 1.52348 1.22681 1.20274 0.92804 1.07862 0.91799 1.21648 0.89979 0.94038 1.00630 1.18912 0.94235 1.11261 0.87551 1.21593 0.90047 1.06189 1.01501 1.21530 1.00657 1.03441 0.92374 1.22864 0.79621 1.07425 1.03156 1.43420 1.09136 1.43534 1.11064 1.25845 0.81264 0.92138 0.96890 1.68348 1.15560 1.19043 1.16496 1.21292 0.79456 0.98827 0.99736 1.22361 0.97380 0.98969 0.95497 0.87941 0.93497 0.80531 0.93040 0.90782 0.88894 0.90053 0.89027 0.89297 0.83205 0.82287 0.80239 0.76237 0.72635 0.91467 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.87 13.97 21.65 0.30 -63.57 16 2 C -0.06 -3.66 5.50 84.86 0.47 -3.19 16 3 Si 0.94 47.43 27.73 68.60 1.90 49.33 16 4 H -0.29 -14.59 7.11 99.48 0.71 -13.88 16 5 H -0.29 -14.87 7.11 99.48 0.71 -14.16 16 6 H -0.26 -11.81 6.52 99.48 0.65 -11.16 16 7 C -0.22 -12.39 10.44 84.03 0.88 -11.51 16 8 H 0.06 3.90 8.06 -2.91 -0.02 3.88 16 9 N -0.75 -34.48 4.61 -322.23 -1.49 -35.97 16 10 C 0.19 6.81 3.46 45.14 0.16 6.97 16 11 H 0.05 2.05 8.09 -2.39 -0.02 2.03 16 12 C -0.14 -4.14 6.73 32.80 0.22 -3.91 16 13 C -0.08 -1.66 6.71 31.13 0.21 -1.46 16 14 C -0.12 -3.07 2.73 -10.56 -0.03 -3.10 16 15 H 0.06 1.79 7.64 -2.39 -0.02 1.77 16 16 C 0.15 3.51 5.25 85.00 0.45 3.95 16 17 N -0.61 -18.77 3.43 -819.09 -2.81 -21.58 16 18 C 0.58 19.42 7.84 86.62 0.68 20.10 16 19 O -0.59 -23.77 16.67 -4.17 -0.07 -23.84 16 20 C -0.01 -0.30 6.75 40.98 0.28 -0.03 16 21 C -0.04 -0.96 9.72 22.91 0.22 -0.74 16 22 C -0.02 -0.30 6.78 38.69 0.26 -0.04 16 23 C -0.17 -2.37 10.98 22.62 0.25 -2.12 16 24 C -0.16 -1.34 10.80 22.02 0.24 -1.10 16 25 C 0.00 0.00 11.61 83.46 0.97 0.97 16 26 N -0.40 -5.11 2.95 -350.61 -1.04 -6.14 16 27 C 0.32 3.61 12.16 179.86 2.19 5.80 16 28 N -0.48 -9.26 6.96 -186.89 -1.30 -10.56 16 29 C 0.13 4.46 6.53 85.07 0.56 5.01 16 30 C -0.12 -3.68 2.60 -10.61 -0.03 -3.71 16 31 H 0.10 2.69 8.13 -2.39 -0.02 2.67 16 32 H 0.26 15.97 8.31 -92.70 -0.77 15.20 16 33 H 0.36 16.63 4.05 -92.71 -0.38 16.25 16 34 H 0.05 1.81 7.98 -2.39 -0.02 1.79 16 35 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.08 1.51 8.14 -2.39 -0.02 1.50 16 38 H 0.09 1.79 7.92 -2.38 -0.02 1.77 16 39 H 0.09 1.94 7.09 -2.39 -0.02 1.92 16 40 H 0.15 3.71 7.66 -2.91 -0.02 3.69 16 41 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 42 H 0.18 0.46 8.06 -2.91 -0.02 0.44 16 43 H 0.22 -0.57 8.06 -2.91 -0.02 -0.60 16 44 H 0.26 -0.05 8.06 -2.91 -0.02 -0.07 16 45 H 0.07 2.48 8.09 -2.39 -0.02 2.46 16 46 H 0.05 2.04 6.96 -2.39 -0.02 2.02 16 Total: -1.00 -81.70 370.28 4.04 -77.66 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: 0.57 Total: 22.78 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 7.96 Total: 11.89 kcal Atomic # 7 Polarization: -131.49 SS G_CDS: -6.33 Total: -137.82 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: -0.07 Total: -23.84 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 1.90 Total: 49.33 kcal Total: -81.70 4.04 -77.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026291595.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.204 kcal (2) G-P(sol) polarization free energy of solvation -81.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds