Wall clock time and date at job start Tue Mar 31 2020 23:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00211 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99752 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99933 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99926 * 3 2 1 7 7 C 1.38817 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99635 * 359.97438 * 7 2 1 9 9 N 1.36932 * 120.00011 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99549 * 179.97438 * 9 7 2 11 11 H 1.08995 * 110.44624 * 36.10234 * 10 9 7 12 12 C 1.55944 * 110.49597 * 273.54344 * 10 9 7 13 13 C 1.56399 * 105.79284 * 233.79736 * 12 10 9 14 14 C 1.51001 * 101.58941 * 334.97712 * 13 12 10 15 15 H 1.08998 * 110.04547 * 291.25945 * 14 13 12 16 16 C 1.50337 * 125.58151 * 156.04599 * 14 13 12 17 17 N 1.49222 * 104.85782 * 215.66018 * 16 14 13 18 18 C 1.34777 * 126.05817 * 187.08505 * 17 16 14 19 19 O 1.21650 * 120.00052 * 179.97438 * 18 17 16 20 20 C 1.47279 * 120.00233 * 359.97438 * 18 17 16 21 21 C 1.38429 * 120.03098 * 179.72864 * 20 18 17 22 22 C 1.40658 * 118.27206 * 179.74100 * 21 20 18 23 23 C 1.38256 * 133.40303 * 180.19661 * 22 21 20 24 24 C 1.39681 * 106.99556 * 180.29838 * 23 22 21 25 25 C 1.35644 * 108.08027 * 0.02562 * 24 23 22 26 26 N 1.35908 * 109.06345 * 0.02562 * 25 24 23 27 27 C 1.36902 * 132.42448 * 180.02562 * 26 25 24 28 28 N 1.29798 * 121.47790 * 179.97438 * 27 26 25 29 29 C 1.49695 * 107.88340 * 7.06203 * 17 16 14 30 30 C 1.50303 * 110.49173 * 158.81046 * 10 9 7 31 31 H 1.08997 * 110.00139 * 38.17588 * 30 10 9 32 32 H 0.96998 * 119.99442 * 359.97438 * 1 2 3 33 33 H 0.96993 * 120.00149 * 359.97438 * 9 7 2 34 34 H 1.09004 * 110.18075 * 352.87704 * 12 10 9 35 35 H 1.09004 * 110.18565 * 114.63425 * 12 10 9 36 36 H 1.08996 * 111.00731 * 93.05818 * 13 12 10 37 37 H 1.09005 * 111.00386 * 216.86940 * 13 12 10 38 38 H 1.09003 * 110.36488 * 334.50217 * 16 14 13 39 39 H 1.08994 * 110.36563 * 96.81708 * 16 14 13 40 40 H 1.08007 * 120.86632 * 359.97092 * 21 20 18 41 41 H 1.07997 * 126.50252 * 0.28627 * 23 22 21 42 42 H 1.07998 * 125.95519 * 179.97438 * 24 23 22 43 43 H 1.08010 * 125.46631 * 179.97438 * 25 24 23 44 44 H 1.07999 * 119.26458 * 359.94653 * 27 26 25 45 45 H 1.08999 * 110.84465 * 143.32671 * 29 17 16 46 46 H 1.08999 * 110.84748 * 266.94663 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 1.4477 2.6527 -0.7001 6 1 3.5478 1.4401 -0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4709 0.0000 11 1 3.5880 -3.2131 -0.6021 12 6 4.3063 -2.9892 1.4579 13 6 5.8421 -3.2362 1.6208 14 6 6.2652 -3.4694 0.1902 15 1 5.8577 -4.4137 -0.1708 16 6 7.6502 -3.2630 -0.3571 17 7 7.4415 -2.7512 -1.7432 18 6 8.4015 -2.5500 -2.6675 19 8 8.1061 -2.1272 -3.7693 20 6 9.8083 -2.8419 -2.3437 21 6 10.7942 -2.6408 -3.2944 22 6 12.1261 -2.9263 -2.9437 23 6 13.3268 -2.8406 -3.6238 24 6 14.3244 -3.2734 -2.7471 25 6 13.7354 -3.6102 -1.5725 26 7 12.3955 -3.4063 -1.6733 27 6 11.3651 -3.5852 -0.7898 28 7 10.1380 -3.3162 -1.1163 29 6 5.9768 -2.5015 -1.9254 30 6 5.5122 -2.2702 -0.5083 31 1 5.9080 -1.3215 -0.1458 32 1 -0.4849 0.8401 0.0004 33 1 3.8646 -0.3622 0.0004 34 1 3.9682 -2.2384 2.1721 35 1 3.7571 -3.9196 1.6026 36 1 6.3370 -2.3585 2.0365 37 1 6.0333 -4.1170 2.2338 38 1 8.1889 -2.5282 0.2413 39 1 8.1939 -4.2073 -0.3794 40 1 10.5476 -2.2706 -4.2786 41 1 13.4668 -2.5031 -4.6401 42 1 15.3802 -3.3308 -2.9666 43 1 14.2489 -3.9817 -0.6979 44 1 11.5779 -3.9590 0.2008 45 1 5.8076 -1.6162 -2.5384 46 1 5.4854 -3.3734 -2.3572 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026291598.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:08 Heat of formation + Delta-G solvation = 98.318098 kcal Electronic energy + Delta-G solvation = -28945.399234 eV Core-core repulsion = 25030.468944 eV Total energy + Delta-G solvation = -3914.930290 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.79782 -40.60496 -38.99270 -37.59523 -35.45163 -33.53723 -33.44773 -31.46254 -31.16363 -30.00493 -28.82393 -28.39179 -25.74303 -24.79510 -24.09754 -22.85590 -22.31180 -21.58224 -20.29756 -19.96648 -19.23836 -18.66190 -17.66193 -17.32094 -16.61138 -16.26781 -16.12042 -15.71222 -15.24811 -14.94854 -14.71739 -14.67814 -14.24339 -13.92068 -13.53346 -13.32611 -13.06252 -12.90561 -12.82577 -12.73526 -12.59708 -12.32455 -11.96304 -11.89527 -11.53040 -11.15263 -11.01596 -10.85637 -10.79677 -10.75268 -10.44144 -10.38569 -10.02921 -9.92782 -9.75812 -9.55924 -9.41353 -8.92803 -8.68259 -7.93170 -7.27114 -5.76860 -3.12552 0.02644 0.74736 2.09881 2.39864 2.49089 2.75355 3.38437 3.40918 3.42034 3.46572 3.52773 3.99321 4.13694 4.24358 4.36361 4.59611 4.72625 4.78485 4.83565 4.98175 5.04948 5.14943 5.25840 5.27560 5.37813 5.48495 5.52272 5.59311 5.61818 5.71514 5.73206 5.77436 5.87278 5.93011 6.04503 6.05905 6.08996 6.17067 6.23008 6.24923 6.30949 6.38833 6.57367 6.63177 6.72708 6.96249 7.19404 7.45777 7.99413 8.04257 8.42486 9.20387 9.93135 10.12489 11.41382 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021107 B = 0.002430 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.245026 B =11521.921286 C =12134.064451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.883 3.117 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.243 4.243 8 H 0.091 0.909 9 N -0.745 5.745 10 C 0.202 3.798 11 H 0.063 0.937 12 C -0.142 4.142 13 C -0.096 4.096 14 C -0.131 4.131 15 H 0.081 0.919 16 C 0.141 3.859 17 N -0.607 5.607 18 C 0.590 3.410 19 O -0.540 6.540 20 C 0.015 3.985 21 C -0.039 4.039 22 C 0.026 3.974 23 C -0.171 4.171 24 C -0.147 4.147 25 C -0.028 4.028 26 N -0.388 5.388 27 C 0.304 3.696 28 N -0.460 5.460 29 C 0.128 3.872 30 C -0.124 4.124 31 H 0.079 0.921 32 H 0.259 0.741 33 H 0.361 0.639 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.163 0.837 41 H 0.152 0.848 42 H 0.152 0.848 43 H 0.177 0.823 44 H 0.208 0.792 45 H 0.083 0.917 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.766 -10.740 -0.280 32.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.191 4.191 3 Si 0.713 3.287 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.373 4.373 8 H 0.109 0.891 9 N -0.387 5.387 10 C 0.091 3.909 11 H 0.081 0.919 12 C -0.183 4.183 13 C -0.134 4.134 14 C -0.151 4.151 15 H 0.100 0.900 16 C 0.019 3.981 17 N -0.340 5.340 18 C 0.377 3.623 19 O -0.418 6.418 20 C -0.102 4.102 21 C -0.061 4.061 22 C -0.079 4.079 23 C -0.197 4.197 24 C -0.169 4.169 25 C -0.159 4.159 26 N -0.061 5.061 27 C 0.021 3.979 28 N -0.172 5.172 29 C 0.007 3.993 30 C -0.144 4.144 31 H 0.097 0.903 32 H 0.069 0.931 33 H 0.194 0.806 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.181 0.819 41 H 0.170 0.830 42 H 0.170 0.830 43 H 0.194 0.806 44 H 0.224 0.776 45 H 0.101 0.899 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 29.382 -10.659 -0.289 31.257 hybrid contribution 1.245 1.347 -0.399 1.877 sum 30.627 -9.312 -0.688 32.019 Atomic orbital electron populations 1.69700 1.05093 1.25806 1.57480 1.24672 0.95219 0.97175 1.02019 0.86576 0.79302 0.85109 0.77708 1.21150 1.21755 1.20312 1.19071 0.80551 0.94691 1.42991 0.89127 1.42860 1.04070 1.01799 1.89959 1.20060 0.88173 0.89464 0.93156 0.91932 1.23745 0.93168 1.01266 1.00098 1.21731 0.97192 1.00900 0.93614 1.22303 0.95165 0.99665 0.97941 0.90014 1.21266 0.95839 0.99712 0.81243 1.49632 1.07306 1.63351 1.13704 1.17018 0.83091 0.78469 0.83685 1.90843 1.82098 1.47095 1.21783 1.20766 0.94704 1.04608 0.90156 1.21687 0.88559 0.94783 1.01071 1.18892 0.95068 1.07773 0.86182 1.21190 0.89658 1.08055 1.00754 1.21078 0.99853 1.03178 0.92821 1.22006 0.80337 1.11418 1.02121 1.43194 1.07992 1.42900 1.11977 1.24893 0.81201 0.96450 0.95309 1.68463 1.16039 1.13967 1.18737 1.21573 0.78295 1.02036 0.97364 1.22525 0.98556 0.98976 0.94369 0.90308 0.93074 0.80573 0.90723 0.92226 0.91724 0.91967 0.91157 0.90190 0.81912 0.83033 0.83000 0.80597 0.77564 0.89866 0.90631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.25 13.97 55.49 0.78 -28.48 16 2 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 3 Si 0.88 22.27 27.73 -169.99 -4.71 17.55 16 4 H -0.28 -7.12 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 6 H -0.28 -6.65 6.52 56.52 0.37 -6.29 16 7 C -0.24 -6.74 10.46 -15.06 -0.16 -6.90 16 8 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16 9 N -0.74 -17.19 4.92 -53.20 -0.26 -17.45 16 10 C 0.20 3.69 3.39 -67.70 -0.23 3.46 16 11 H 0.06 1.19 8.11 -51.93 -0.42 0.77 16 12 C -0.14 -2.25 6.73 -23.33 -0.16 -2.41 16 13 C -0.10 -1.18 6.72 -25.91 -0.17 -1.35 16 14 C -0.13 -1.62 2.77 -90.27 -0.25 -1.87 16 15 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 16 C 0.14 1.66 5.25 -3.86 -0.02 1.64 16 17 N -0.61 -8.76 3.43 -172.88 -0.59 -9.36 16 18 C 0.59 9.07 7.84 -12.59 -0.10 8.97 16 19 O -0.54 -9.85 16.67 5.23 0.09 -9.76 16 20 C 0.02 0.19 6.75 -82.43 -0.56 -0.36 16 21 C -0.04 -0.43 9.72 -38.60 -0.38 -0.81 16 22 C 0.03 0.25 6.78 -83.95 -0.57 -0.32 16 23 C -0.17 -1.34 10.98 -39.04 -0.43 -1.77 16 24 C -0.15 -0.89 10.80 -39.97 -0.43 -1.32 16 25 C -0.03 -0.16 11.61 -16.67 -0.19 -0.35 16 26 N -0.39 -3.06 2.95 -62.17 -0.18 -3.24 16 27 C 0.30 2.19 12.16 -89.23 -1.09 1.11 16 28 N -0.46 -4.69 6.97 -10.43 -0.07 -4.76 16 29 C 0.13 1.98 6.81 -3.31 -0.02 1.96 16 30 C -0.12 -1.92 2.40 -90.33 -0.22 -2.14 16 31 H 0.08 1.30 7.92 -51.93 -0.41 0.89 16 32 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 33 H 0.36 8.34 5.50 -40.82 -0.22 8.11 16 34 H 0.07 1.34 7.98 -51.93 -0.41 0.92 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.82 7.91 -51.93 -0.41 0.41 16 39 H 0.08 0.86 7.11 -51.93 -0.37 0.49 16 40 H 0.16 1.74 7.66 -52.48 -0.40 1.33 16 41 H 0.15 0.93 8.06 -52.49 -0.42 0.50 16 42 H 0.15 0.53 8.06 -52.49 -0.42 0.11 16 43 H 0.18 0.37 8.06 -52.48 -0.42 -0.06 16 44 H 0.21 0.55 8.06 -52.49 -0.42 0.12 16 45 H 0.08 1.43 8.10 -51.93 -0.42 1.01 16 46 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 373.63 15.07 5.63 5.63 Total: -1.00 -34.86 373.63 -10.86 -45.73 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -6.47 Total: 6.56 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -5.06 Total: -2.41 kcal Atomic # 7 Polarization: -62.96 SS G_CDS: -0.34 Total: -63.29 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.71 Total: 17.55 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.86 -10.86 -45.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026291598.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.045 kcal (2) G-P(sol) polarization free energy of solvation -34.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds