Wall clock time and date at job start Tue Mar 31 2020 23:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00211 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99752 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99933 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99926 * 3 2 1 7 7 C 1.38817 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99635 * 359.97438 * 7 2 1 9 9 N 1.36932 * 120.00011 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99549 * 179.97438 * 9 7 2 11 11 H 1.08995 * 110.44624 * 36.10234 * 10 9 7 12 12 C 1.55944 * 110.49597 * 273.54344 * 10 9 7 13 13 C 1.56399 * 105.79284 * 233.79736 * 12 10 9 14 14 C 1.51001 * 101.58941 * 334.97712 * 13 12 10 15 15 H 1.08998 * 110.04547 * 291.25945 * 14 13 12 16 16 C 1.50337 * 125.58151 * 156.04599 * 14 13 12 17 17 N 1.49222 * 104.85782 * 215.66018 * 16 14 13 18 18 C 1.34777 * 126.05817 * 187.08505 * 17 16 14 19 19 O 1.21650 * 120.00052 * 179.97438 * 18 17 16 20 20 C 1.47279 * 120.00233 * 359.97438 * 18 17 16 21 21 C 1.38429 * 120.03098 * 179.72864 * 20 18 17 22 22 C 1.40658 * 118.27206 * 179.74100 * 21 20 18 23 23 C 1.38256 * 133.40303 * 180.19661 * 22 21 20 24 24 C 1.39681 * 106.99556 * 180.29838 * 23 22 21 25 25 C 1.35644 * 108.08027 * 0.02562 * 24 23 22 26 26 N 1.35908 * 109.06345 * 0.02562 * 25 24 23 27 27 C 1.36902 * 132.42448 * 180.02562 * 26 25 24 28 28 N 1.29798 * 121.47790 * 179.97438 * 27 26 25 29 29 C 1.49695 * 107.88340 * 7.06203 * 17 16 14 30 30 C 1.50303 * 110.49173 * 158.81046 * 10 9 7 31 31 H 1.08997 * 110.00139 * 38.17588 * 30 10 9 32 32 H 0.96998 * 119.99442 * 359.97438 * 1 2 3 33 33 H 0.96993 * 120.00149 * 359.97438 * 9 7 2 34 34 H 1.09004 * 110.18075 * 352.87704 * 12 10 9 35 35 H 1.09004 * 110.18565 * 114.63425 * 12 10 9 36 36 H 1.08996 * 111.00731 * 93.05818 * 13 12 10 37 37 H 1.09005 * 111.00386 * 216.86940 * 13 12 10 38 38 H 1.09003 * 110.36488 * 334.50217 * 16 14 13 39 39 H 1.08994 * 110.36563 * 96.81708 * 16 14 13 40 40 H 1.08007 * 120.86632 * 359.97092 * 21 20 18 41 41 H 1.07997 * 126.50252 * 0.28627 * 23 22 21 42 42 H 1.07998 * 125.95519 * 179.97438 * 24 23 22 43 43 H 1.08010 * 125.46631 * 179.97438 * 25 24 23 44 44 H 1.07999 * 119.26458 * 359.94653 * 27 26 25 45 45 H 1.08999 * 110.84465 * 143.32671 * 29 17 16 46 46 H 1.08999 * 110.84748 * 266.94663 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 1.4477 2.6527 -0.7001 6 1 3.5478 1.4401 -0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4709 0.0000 11 1 3.5880 -3.2131 -0.6021 12 6 4.3063 -2.9892 1.4579 13 6 5.8421 -3.2362 1.6208 14 6 6.2652 -3.4694 0.1902 15 1 5.8577 -4.4137 -0.1708 16 6 7.6502 -3.2630 -0.3571 17 7 7.4415 -2.7512 -1.7432 18 6 8.4015 -2.5500 -2.6675 19 8 8.1061 -2.1272 -3.7693 20 6 9.8083 -2.8419 -2.3437 21 6 10.7942 -2.6408 -3.2944 22 6 12.1261 -2.9263 -2.9437 23 6 13.3268 -2.8406 -3.6238 24 6 14.3244 -3.2734 -2.7471 25 6 13.7354 -3.6102 -1.5725 26 7 12.3955 -3.4063 -1.6733 27 6 11.3651 -3.5852 -0.7898 28 7 10.1380 -3.3162 -1.1163 29 6 5.9768 -2.5015 -1.9254 30 6 5.5122 -2.2702 -0.5083 31 1 5.9080 -1.3215 -0.1458 32 1 -0.4849 0.8401 0.0004 33 1 3.8646 -0.3622 0.0004 34 1 3.9682 -2.2384 2.1721 35 1 3.7571 -3.9196 1.6026 36 1 6.3370 -2.3585 2.0365 37 1 6.0333 -4.1170 2.2338 38 1 8.1889 -2.5282 0.2413 39 1 8.1939 -4.2073 -0.3794 40 1 10.5476 -2.2706 -4.2786 41 1 13.4668 -2.5031 -4.6401 42 1 15.3802 -3.3308 -2.9666 43 1 14.2489 -3.9817 -0.6979 44 1 11.5779 -3.9590 0.2008 45 1 5.8076 -1.6162 -2.5384 46 1 5.4854 -3.3734 -2.3572 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026291598.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:07 Heat of formation + Delta-G solvation = 77.888658 kcal Electronic energy + Delta-G solvation = -28946.285121 eV Core-core repulsion = 25030.468944 eV Total energy + Delta-G solvation = -3915.816177 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.35215 -41.75828 -40.09129 -38.34092 -36.94358 -35.13017 -34.18825 -33.08980 -32.07824 -31.10646 -30.12418 -29.17770 -27.17368 -25.55948 -24.92584 -24.51858 -23.43293 -22.11292 -21.56192 -20.84537 -20.55434 -19.64257 -19.32840 -18.30159 -17.66689 -17.03441 -16.89576 -16.65875 -16.48053 -16.16733 -15.90794 -15.87960 -15.26468 -15.07251 -14.99410 -14.50822 -14.38494 -14.08654 -13.54995 -13.52282 -13.49684 -13.31920 -13.28360 -13.22024 -13.08179 -12.63124 -12.33577 -12.32633 -12.17396 -11.84199 -11.71592 -11.69007 -11.54662 -11.42338 -11.05279 -10.94441 -10.88040 -9.92297 -9.82268 -9.30086 -8.55506 -8.02765 -5.34981 -0.69354 0.18058 1.35321 1.37735 1.44566 1.54820 1.61101 1.68423 1.96016 2.46589 2.59191 2.81515 2.97312 3.29568 3.42622 3.51754 3.60597 3.83747 3.89712 3.95179 4.04466 4.16249 4.25701 4.28473 4.41273 4.45365 4.50827 4.54238 4.61236 4.61745 4.71586 4.73606 4.78093 4.90395 4.95625 5.07173 5.15438 5.17914 5.23203 5.25674 5.33983 5.51331 5.52800 5.54138 5.73204 5.79187 6.19179 6.22333 6.33449 6.58209 6.94803 7.07448 7.84717 8.02397 9.18813 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021107 B = 0.002430 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.245026 B =11521.921286 C =12134.064451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.065 4.065 3 Si 0.950 3.050 4 H -0.276 1.276 5 H -0.298 1.298 6 H -0.260 1.260 7 C -0.223 4.223 8 H 0.060 0.940 9 N -0.750 5.750 10 C 0.191 3.809 11 H 0.050 0.950 12 C -0.137 4.137 13 C -0.080 4.080 14 C -0.109 4.109 15 H 0.088 0.912 16 C 0.150 3.850 17 N -0.609 5.609 18 C 0.582 3.418 19 O -0.587 6.587 20 C -0.011 4.011 21 C -0.041 4.041 22 C -0.016 4.016 23 C -0.167 4.167 24 C -0.158 4.158 25 C 0.000 4.000 26 N -0.398 5.398 27 C 0.321 3.679 28 N -0.481 5.481 29 C 0.127 3.873 30 C -0.125 4.125 31 H 0.072 0.928 32 H 0.256 0.744 33 H 0.363 0.637 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.099 0.901 40 H 0.150 0.850 41 H 0.159 0.841 42 H 0.180 0.820 43 H 0.221 0.779 44 H 0.258 0.742 45 H 0.056 0.944 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.876 -12.157 2.007 37.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.256 4.256 3 Si 0.779 3.221 4 H -0.202 1.202 5 H -0.225 1.225 6 H -0.185 1.185 7 C -0.354 4.354 8 H 0.078 0.922 9 N -0.393 5.393 10 C 0.083 3.917 11 H 0.068 0.932 12 C -0.178 4.178 13 C -0.118 4.118 14 C -0.129 4.129 15 H 0.106 0.894 16 C 0.030 3.970 17 N -0.340 5.340 18 C 0.372 3.628 19 O -0.468 6.468 20 C -0.127 4.127 21 C -0.064 4.064 22 C -0.119 4.119 23 C -0.194 4.194 24 C -0.180 4.180 25 C -0.131 4.131 26 N -0.071 5.071 27 C 0.039 3.961 28 N -0.194 5.194 29 C 0.006 3.994 30 C -0.145 4.145 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.196 0.804 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.117 0.883 40 H 0.168 0.832 41 H 0.177 0.823 42 H 0.197 0.803 43 H 0.238 0.762 44 H 0.274 0.726 45 H 0.075 0.925 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 34.543 -12.118 2.022 36.663 hybrid contribution -0.125 1.637 -1.155 2.007 sum 34.417 -10.482 0.866 35.989 Atomic orbital electron populations 1.69872 1.06954 1.26457 1.60122 1.25437 0.96050 1.00940 1.03160 0.85474 0.78373 0.80249 0.78044 1.20205 1.22532 1.18548 1.19039 0.82573 0.93382 1.40378 0.92153 1.42900 1.02513 1.03761 1.90079 1.20329 0.89035 0.87226 0.95125 0.93237 1.23569 0.96554 1.00648 0.97000 1.21647 0.93646 1.02738 0.93772 1.22291 0.94887 0.98119 0.97596 0.89380 1.21345 0.95381 1.00738 0.79560 1.49682 1.06396 1.63179 1.14768 1.17574 0.84518 0.77613 0.83109 1.90794 1.83123 1.49284 1.23642 1.20287 0.92875 1.07600 0.91964 1.21649 0.89682 0.94584 1.00453 1.18916 0.94654 1.10422 0.87950 1.21592 0.89801 1.06568 1.01440 1.21526 1.00909 1.02981 0.92616 1.22857 0.79255 1.07906 1.03075 1.43417 1.09020 1.43320 1.11391 1.25852 0.80116 0.93803 0.96365 1.68352 1.17893 1.15691 1.17459 1.21443 0.79781 1.01046 0.97146 1.22293 0.97047 1.00367 0.94776 0.90992 0.93468 0.80426 0.92805 0.91599 0.90934 0.88697 0.90319 0.88281 0.83217 0.82316 0.80288 0.76248 0.72624 0.92504 0.90446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.90 13.97 21.65 0.30 -63.60 16 2 C -0.06 -3.87 5.50 84.86 0.47 -3.40 16 3 Si 0.95 47.03 27.73 68.60 1.90 48.93 16 4 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 5 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 6 H -0.26 -11.99 6.52 99.48 0.65 -11.35 16 7 C -0.22 -12.73 10.46 84.04 0.88 -11.85 16 8 H 0.06 3.75 8.06 -2.91 -0.02 3.73 16 9 N -0.75 -35.11 4.92 -322.24 -1.59 -36.70 16 10 C 0.19 7.02 3.39 45.14 0.15 7.18 16 11 H 0.05 1.93 8.11 -2.39 -0.02 1.91 16 12 C -0.14 -4.19 6.73 32.80 0.22 -3.97 16 13 C -0.08 -1.68 6.72 31.13 0.21 -1.47 16 14 C -0.11 -2.43 2.77 -10.57 -0.03 -2.46 16 15 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 16 C 0.15 3.19 5.25 84.99 0.45 3.63 16 17 N -0.61 -17.60 3.43 -819.09 -2.81 -20.41 16 18 C 0.58 18.61 7.84 86.62 0.68 19.29 16 19 O -0.59 -23.01 16.67 -4.19 -0.07 -23.07 16 20 C -0.01 -0.29 6.75 40.98 0.28 -0.01 16 21 C -0.04 -0.95 9.72 22.91 0.22 -0.72 16 22 C -0.02 -0.29 6.78 38.69 0.26 -0.03 16 23 C -0.17 -2.30 10.98 22.62 0.25 -2.05 16 24 C -0.16 -1.28 10.80 22.02 0.24 -1.04 16 25 C 0.00 0.00 11.61 83.46 0.97 0.97 16 26 N -0.40 -4.85 2.95 -350.61 -1.04 -5.88 16 27 C 0.32 3.35 12.16 179.86 2.19 5.54 16 28 N -0.48 -8.74 6.97 -186.90 -1.30 -10.04 16 29 C 0.13 4.08 6.81 85.08 0.58 4.65 16 30 C -0.12 -3.82 2.40 -10.60 -0.03 -3.84 16 31 H 0.07 2.33 7.92 -2.39 -0.02 2.31 16 32 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 33 H 0.36 16.71 5.50 -92.71 -0.51 16.20 16 34 H 0.05 1.88 7.98 -2.38 -0.02 1.86 16 35 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 36 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.08 1.59 7.91 -2.39 -0.02 1.57 16 39 H 0.10 1.80 7.11 -2.39 -0.02 1.79 16 40 H 0.15 3.59 7.66 -2.91 -0.02 3.56 16 41 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 42 H 0.18 0.40 8.06 -2.91 -0.02 0.38 16 43 H 0.22 -0.67 8.06 -2.91 -0.02 -0.70 16 44 H 0.26 -0.26 8.06 -2.91 -0.02 -0.28 16 45 H 0.06 2.09 8.10 -2.39 -0.02 2.07 16 46 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -81.92 373.63 3.82 -78.10 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 0.43 Total: 22.26 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: 7.98 Total: 10.42 kcal Atomic # 7 Polarization: -130.21 SS G_CDS: -6.43 Total: -136.64 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -0.07 Total: -23.07 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 1.90 Total: 48.93 kcal Total: -81.92 3.82 -78.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026291598.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.986 kcal (2) G-P(sol) polarization free energy of solvation -81.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds