Wall clock time and date at job start Tue Mar 31 2020 23:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00126 * 2 1 4 4 H 1.48504 * 109.46979 * 270.00169 * 3 2 1 5 5 H 1.48493 * 109.46988 * 29.99905 * 3 2 1 6 6 H 1.48491 * 109.47054 * 150.00249 * 3 2 1 7 7 C 1.38814 * 119.99919 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00062 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99947 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99697 * 179.97438 * 9 7 2 11 11 H 1.09002 * 110.57989 * 32.28535 * 10 9 7 12 12 C 1.55318 * 109.87793 * 269.59096 * 10 9 7 13 13 C 1.56332 * 105.75123 * 247.87380 * 12 10 9 14 14 C 1.51557 * 101.81426 * 25.83022 * 13 12 10 15 15 H 1.08995 * 111.12217 * 71.46538 * 14 13 12 16 16 C 1.51778 * 123.68568 * 208.02487 * 14 13 12 17 17 N 1.49625 * 102.37278 * 151.93994 * 16 14 13 18 18 C 1.34772 * 126.07040 * 154.28103 * 17 16 14 19 19 O 1.21648 * 120.00395 * 3.57986 * 18 17 16 20 20 C 1.47171 * 119.99976 * 183.58046 * 18 17 16 21 21 C 1.38586 * 120.72647 * 6.48162 * 20 18 17 22 22 C 1.38919 * 121.36648 * 179.97438 * 21 20 18 23 23 C 1.35824 * 122.59856 * 0.02562 * 22 21 20 24 24 C 1.40846 * 120.55599 * 359.72045 * 23 22 21 25 25 C 1.38424 * 134.89648 * 179.55742 * 24 23 22 26 26 N 1.33894 * 107.84357 * 180.48506 * 25 24 23 27 27 H 0.96997 * 125.02011 * 180.25937 * 26 25 24 28 28 N 1.39980 * 109.95941 * 0.26116 * 26 25 24 29 29 C 1.31477 * 109.02041 * 0.02562 * 28 26 25 30 30 C 1.49288 * 107.85319 * 334.01586 * 17 16 14 31 31 C 1.49708 * 110.52029 * 155.00214 * 10 9 7 32 32 H 1.09006 * 107.87750 * 196.35826 * 31 10 9 33 33 H 0.97003 * 119.99758 * 359.97438 * 1 2 3 34 34 H 0.96996 * 119.99500 * 0.02562 * 9 7 2 35 35 H 1.09006 * 109.87001 * 128.97620 * 12 10 9 36 36 H 1.09005 * 110.52811 * 7.11736 * 12 10 9 37 37 H 1.08998 * 110.96515 * 267.69345 * 13 12 10 38 38 H 1.09003 * 110.99367 * 143.96846 * 13 12 10 39 39 H 1.08998 * 110.93681 * 33.69001 * 16 14 13 40 40 H 1.09005 * 110.78033 * 270.11472 * 16 14 13 41 41 H 1.08000 * 119.31520 * 359.97438 * 21 20 18 42 42 H 1.08009 * 118.70226 * 180.02562 * 22 21 20 43 43 H 1.07994 * 119.72324 * 180.02562 * 23 22 21 44 44 H 1.08000 * 126.07311 * 0.73813 * 25 24 23 45 45 H 1.08998 * 110.39470 * 112.65779 * 30 17 16 46 46 H 1.08997 * 110.39131 * 234.93966 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 2.9971 -3.5575 0.5427 12 6 2.3119 -4.1187 -1.4627 13 6 1.4421 -5.4028 -1.6590 14 6 0.3393 -5.1891 -0.6416 15 1 -0.3376 -4.3952 -0.9569 16 6 -0.4137 -6.3207 0.0338 17 7 -0.8087 -5.7080 1.3405 18 6 -1.8631 -6.0675 2.0989 19 8 -2.5572 -7.0102 1.7682 20 6 -2.1750 -5.3195 3.3274 21 6 -1.4795 -4.1648 3.6492 22 6 -1.7632 -3.4481 4.8049 23 6 -2.7273 -3.8276 5.6832 24 6 -3.4960 -4.9839 5.4469 25 6 -4.5165 -5.6331 6.1202 26 7 -4.8576 -6.7129 5.4057 27 1 -5.5518 -7.3450 5.6491 28 7 -4.0641 -6.7948 4.2554 29 6 -3.2281 -5.7801 4.2383 30 6 0.1764 -4.6321 1.6578 31 6 1.2204 -4.7469 0.5910 32 1 1.8802 -5.5781 0.8399 33 1 -0.4850 0.8401 0.0004 34 1 0.3555 -2.3880 -0.0005 35 1 3.3674 -4.3549 -1.5985 36 1 2.0052 -3.3453 -2.1669 37 1 2.0155 -6.3010 -1.4299 38 1 1.0364 -5.4489 -2.6697 39 1 0.2359 -7.1818 0.1906 40 1 -1.2943 -6.5990 -0.5452 41 1 -0.7008 -3.8148 2.9877 42 1 -1.1946 -2.5538 5.0134 43 1 -2.9093 -3.2352 6.5675 44 1 -4.9616 -5.3215 7.0536 45 1 -0.3029 -3.6540 1.6166 46 1 0.6160 -4.7977 2.6414 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026329414.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:48 Heat of formation + Delta-G solvation = 119.248559 kcal Electronic energy + Delta-G solvation = -29658.254446 eV Core-core repulsion = 25744.231769 eV Total energy + Delta-G solvation = -3914.022677 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.32019 -40.48625 -38.43574 -36.79901 -35.14721 -33.41066 -32.12356 -31.25518 -30.57073 -29.48479 -29.01153 -28.04083 -25.63635 -24.82405 -23.42330 -23.00501 -21.82212 -21.36961 -19.95358 -19.02661 -18.95388 -18.18494 -17.51996 -17.14228 -16.26013 -15.85680 -15.47993 -15.09593 -14.83155 -14.73046 -14.36220 -14.32365 -14.02069 -13.59959 -13.49958 -13.16048 -12.87752 -12.63741 -12.39048 -12.06138 -12.02617 -11.74108 -11.69812 -11.27438 -11.05841 -10.85144 -10.80648 -10.59212 -10.53150 -10.37657 -10.30246 -10.22866 -10.09338 -9.67078 -9.54771 -9.42687 -8.93286 -8.88280 -8.41668 -7.67281 -6.99284 -5.79142 -3.08250 0.31302 1.78563 2.17594 2.54982 3.07271 3.16811 3.41920 3.47864 3.49126 3.97205 4.15044 4.25248 4.40792 4.57354 4.80219 4.99927 5.03993 5.10754 5.13649 5.29641 5.31363 5.38610 5.49212 5.54553 5.58153 5.66860 5.74202 5.81491 5.84901 5.89355 5.95422 6.03159 6.14465 6.22863 6.26934 6.33359 6.35914 6.40832 6.47882 6.53946 6.57390 6.68837 6.80139 6.81164 6.92319 7.06665 7.54312 7.69305 7.74573 8.38929 8.48028 9.50668 10.06657 10.41670 11.42956 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011448 B = 0.003556 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.170072 B = 7873.050171 C = 9885.930722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.010 4.010 3 Si 0.904 3.096 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.720 5.720 10 C 0.196 3.804 11 H 0.058 0.942 12 C -0.144 4.144 13 C -0.099 4.099 14 C -0.124 4.124 15 H 0.093 0.907 16 C 0.129 3.871 17 N -0.621 5.621 18 C 0.576 3.424 19 O -0.536 6.536 20 C -0.122 4.122 21 C -0.054 4.054 22 C -0.161 4.161 23 C -0.019 4.019 24 C -0.218 4.218 25 C 0.085 3.915 26 N -0.435 5.435 27 H 0.442 0.558 28 N -0.275 5.275 29 C 0.139 3.861 30 C 0.114 3.886 31 C -0.125 4.125 32 H 0.071 0.929 33 H 0.255 0.745 34 H 0.384 0.616 35 H 0.052 0.948 36 H 0.076 0.924 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.170 0.830 42 H 0.132 0.868 43 H 0.125 0.875 44 H 0.188 0.812 45 H 0.095 0.905 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.528 -11.473 11.406 16.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.207 4.207 3 Si 0.735 3.265 4 H -0.219 1.219 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.361 5.361 10 C 0.085 3.915 11 H 0.076 0.924 12 C -0.184 4.184 13 C -0.137 4.137 14 C -0.143 4.143 15 H 0.111 0.889 16 C 0.008 3.992 17 N -0.356 5.356 18 C 0.367 3.633 19 O -0.414 6.414 20 C -0.128 4.128 21 C -0.076 4.076 22 C -0.181 4.181 23 C -0.040 4.040 24 C -0.228 4.228 25 C -0.072 4.072 26 N -0.135 5.135 27 H 0.286 0.714 28 N -0.101 5.101 29 C -0.019 4.019 30 C -0.007 4.007 31 C -0.145 4.145 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.218 0.782 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.187 0.813 42 H 0.150 0.850 43 H 0.143 0.857 44 H 0.205 0.795 45 H 0.113 0.887 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.266 -12.964 10.661 17.592 hybrid contribution -0.063 1.464 0.632 1.596 sum -5.330 -11.500 11.293 16.976 Atomic orbital electron populations 1.69649 1.05031 1.25681 1.57541 1.24711 0.95443 0.97562 1.02946 0.86247 0.78690 0.84091 0.77478 1.21861 1.21863 1.20792 1.19239 0.91007 0.84063 1.42815 0.91145 1.42460 1.05679 0.99592 1.88369 1.19956 0.93986 0.85216 0.92365 0.92364 1.23746 0.98013 0.96206 1.00463 1.21820 0.95641 0.98521 0.97716 1.22683 0.97170 0.98295 0.96136 0.88853 1.21654 0.99103 0.95129 0.83354 1.49654 1.27101 1.36667 1.22142 1.17592 0.79470 0.83485 0.82771 1.90805 1.49682 1.28774 1.72121 1.19728 0.98900 0.98609 0.95614 1.22828 0.97081 0.91342 0.96319 1.20518 1.00448 1.01731 0.95368 1.20323 0.92665 0.92772 0.98227 1.19606 1.03435 1.01471 0.98326 1.22717 0.97141 0.89372 0.97952 1.46529 1.29350 1.20552 1.17024 0.71352 1.77827 1.08614 1.22015 1.01631 1.21517 0.94418 0.92088 0.93865 1.21472 0.89723 0.91387 0.98107 1.22102 0.96622 1.01045 0.94764 0.91107 0.93497 0.78162 0.92927 0.90486 0.91986 0.92057 0.91375 0.90528 0.81347 0.85035 0.85675 0.79469 0.88725 0.90521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.58 13.06 55.49 0.72 -25.85 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.90 21.40 29.55 -169.99 -5.02 16.37 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 7 C -0.24 -6.15 9.96 -15.06 -0.15 -6.30 16 8 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 9 N -0.72 -16.17 4.80 -53.82 -0.26 -16.43 16 10 C 0.20 3.46 3.46 -68.33 -0.24 3.22 16 11 H 0.06 1.04 8.09 -51.93 -0.42 0.62 16 12 C -0.14 -2.30 6.69 -23.71 -0.16 -2.45 16 13 C -0.10 -1.34 6.62 -25.67 -0.17 -1.51 16 14 C -0.12 -1.84 3.08 -89.32 -0.28 -2.11 16 15 H 0.09 1.62 7.88 -51.93 -0.41 1.21 16 16 C 0.13 1.91 6.72 -2.92 -0.02 1.89 16 17 N -0.62 -10.12 3.42 -173.57 -0.59 -10.71 16 18 C 0.58 10.69 7.83 -12.64 -0.10 10.59 16 19 O -0.54 -11.54 16.70 5.23 0.09 -11.45 16 20 C -0.12 -2.07 6.05 -102.74 -0.62 -2.69 16 21 C -0.05 -0.80 8.67 -39.20 -0.34 -1.14 16 22 C -0.16 -2.02 9.82 -40.19 -0.39 -2.42 16 23 C -0.02 -0.22 10.02 -39.46 -0.40 -0.61 16 24 C -0.22 -2.72 6.34 -105.21 -0.67 -3.39 16 25 C 0.09 0.74 12.08 -16.58 -0.20 0.54 16 26 N -0.43 -4.38 7.18 30.86 0.22 -4.16 16 27 H 0.44 2.59 8.96 -182.69 -1.64 0.95 16 28 N -0.28 -4.45 12.26 34.35 0.42 -4.03 16 29 C 0.14 2.29 7.28 -80.98 -0.59 1.70 16 30 C 0.11 1.73 4.58 -4.12 -0.02 1.71 16 31 C -0.13 -1.89 2.26 -91.23 -0.21 -2.09 16 32 H 0.07 0.96 7.99 -51.93 -0.42 0.55 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 34 H 0.38 9.27 6.73 -40.82 -0.27 8.99 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 1.43 7.96 -51.93 -0.41 1.02 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.08 1.18 8.11 -51.93 -0.42 0.76 16 41 H 0.17 2.45 2.81 -53.53 -0.15 2.30 16 42 H 0.13 1.42 8.06 -52.48 -0.42 0.99 16 43 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 44 H 0.19 0.64 8.06 -52.49 -0.42 0.22 16 45 H 0.10 1.61 5.69 -51.93 -0.30 1.32 16 46 H 0.08 1.04 7.09 -51.93 -0.37 0.67 16 LS Contribution 369.45 15.07 5.57 5.57 Total: -1.00 -34.79 369.45 -10.80 -45.59 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -7.31 Total: 10.53 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -4.64 Total: -5.43 kcal Atomic # 7 Polarization: -61.70 SS G_CDS: 0.51 Total: -61.18 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.09 Total: -11.45 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.79 -10.80 -45.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026329414.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.838 kcal (2) G-P(sol) polarization free energy of solvation -34.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds