Wall clock time and date at job start Tue Mar 31 2020 23:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 119.99932 * 2 1 4 4 H 1.48501 * 109.47418 * 90.00172 * 3 2 1 5 5 H 1.48506 * 109.47287 * 329.99863 * 3 2 1 6 6 H 1.48498 * 109.46904 * 210.00351 * 3 2 1 7 7 C 1.38813 * 119.99700 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99715 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00209 * 359.97438 * 7 2 1 10 10 C 1.46495 * 120.00042 * 180.02562 * 9 7 2 11 11 H 1.09003 * 110.46638 * 36.19185 * 10 9 7 12 12 C 1.56004 * 110.52950 * 273.55348 * 10 9 7 13 13 C 1.56332 * 105.77114 * 234.41818 * 12 10 9 14 14 C 1.51571 * 101.81042 * 334.55684 * 13 12 10 15 15 H 1.09002 * 111.12354 * 288.52343 * 14 13 12 16 16 C 1.51522 * 123.33920 * 152.74720 * 14 13 12 17 17 N 1.50371 * 102.13973 * 208.63494 * 16 14 13 18 18 C 1.34785 * 125.78273 * 205.31845 * 17 16 14 19 19 O 1.21643 * 120.00202 * 174.11497 * 18 17 16 20 20 C 1.47162 * 119.99751 * 354.11534 * 18 17 16 21 21 C 1.38589 * 120.72819 * 325.22384 * 20 18 17 22 22 C 1.38931 * 121.36536 * 179.75098 * 21 20 18 23 23 C 1.35829 * 122.59438 * 0.52693 * 22 21 20 24 24 C 1.40841 * 120.55611 * 359.75049 * 23 22 21 25 25 C 1.38423 * 134.89675 * 180.02562 * 24 23 22 26 26 N 1.33895 * 107.84423 * 179.97438 * 25 24 23 27 27 H 0.97002 * 125.01751 * 179.97438 * 26 25 24 28 28 N 1.39979 * 109.96353 * 359.97438 * 26 25 24 29 29 C 1.31480 * 109.01326 * 0.02562 * 28 26 25 30 30 C 1.49284 * 108.14567 * 24.83356 * 17 16 14 31 31 C 1.49702 * 110.52612 * 158.98449 * 10 9 7 32 32 H 1.08988 * 108.54671 * 40.65250 * 31 10 9 33 33 H 0.97000 * 120.00132 * 180.02562 * 1 2 3 34 34 H 0.97003 * 119.99756 * 0.02562 * 9 7 2 35 35 H 1.09006 * 110.18739 * 353.48742 * 12 10 9 36 36 H 1.09000 * 110.19652 * 115.26092 * 12 10 9 37 37 H 1.08997 * 110.96793 * 92.68738 * 13 12 10 38 38 H 1.08999 * 110.96469 * 216.39610 * 13 12 10 39 39 H 1.09000 * 110.80101 * 326.61252 * 16 14 13 40 40 H 1.09000 * 110.80326 * 90.11111 * 16 14 13 41 41 H 1.07999 * 119.31814 * 359.97438 * 21 20 18 42 42 H 1.07999 * 118.70561 * 180.27397 * 22 21 20 43 43 H 1.07999 * 119.71965 * 179.73190 * 23 22 21 44 44 H 1.08004 * 126.07710 * 359.97438 * 25 24 23 45 45 H 1.09003 * 110.39628 * 248.07630 * 30 17 16 46 46 H 1.08994 * 110.40015 * 125.67404 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 1.4001 5 1 1.4477 2.6527 -0.7001 6 1 3.5477 1.4401 -0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9624 -3.5748 0.6025 12 6 2.4100 -4.0853 -1.4587 13 6 1.8416 -5.5321 -1.6253 14 6 1.8308 -6.0279 -0.1930 15 1 2.8431 -6.2123 0.1666 16 6 0.8700 -7.0835 0.3155 17 7 0.7341 -6.7145 1.7669 18 6 0.4020 -7.5558 2.7662 19 8 0.4259 -7.1697 3.9195 20 6 0.0105 -8.9413 2.4620 21 6 -0.6988 -9.2400 1.3094 22 6 -1.0707 -10.5439 1.0066 23 6 -0.7765 -11.5951 1.8149 24 6 -0.0636 -11.3991 3.0136 25 6 0.3850 -12.2250 4.0299 26 7 1.0177 -11.4617 4.9298 27 1 1.4300 -11.7881 5.7449 28 7 0.9963 -10.1232 4.5206 29 6 0.3574 -10.0357 3.3748 30 6 1.0421 -5.2606 1.9078 31 6 1.1871 -4.7657 0.5022 32 1 0.1870 -4.6357 0.0889 33 1 -0.4850 -0.8400 0.0004 34 1 0.3556 -2.3880 -0.0005 35 1 1.9377 -3.4111 -2.1733 36 1 3.4907 -4.0858 -1.6003 37 1 0.8330 -5.5098 -2.0378 38 1 2.5005 -6.1411 -2.2442 39 1 -0.0912 -7.0093 -0.1932 40 1 1.2943 -8.0809 0.2003 41 1 -0.9648 -8.4431 0.6308 42 1 -1.6188 -10.7285 0.0946 43 1 -1.0923 -12.5896 1.5362 44 1 0.2488 -13.2949 4.0868 45 1 1.9729 -5.1210 2.4576 46 1 0.2228 -4.7455 2.4092 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026329417.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:52 Heat of formation + Delta-G solvation = 101.215557 kcal Electronic energy + Delta-G solvation = -28989.926223 eV Core-core repulsion = 25075.121576 eV Total energy + Delta-G solvation = -3914.804646 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.56406 -40.48595 -38.60387 -37.05172 -35.35530 -33.60986 -32.41018 -31.30893 -30.83622 -29.79154 -28.67239 -28.33507 -25.28424 -25.03145 -23.41274 -22.98810 -22.15043 -21.53872 -20.17489 -19.29145 -19.20048 -18.34679 -17.47742 -17.23995 -16.56058 -16.44913 -15.71284 -15.29980 -15.09860 -14.85684 -14.56594 -14.39318 -14.08775 -13.66278 -13.53979 -13.43453 -13.25104 -12.75459 -12.62214 -12.29727 -12.18128 -12.07615 -11.68758 -11.49015 -11.33787 -11.02385 -10.79780 -10.74203 -10.61254 -10.58152 -10.41695 -10.11468 -9.94712 -9.88213 -9.66934 -9.18330 -9.11857 -8.88535 -8.58198 -7.95133 -7.01720 -6.07721 -3.07966 0.06229 1.48003 1.93842 2.30795 2.83008 2.92672 3.54184 3.59010 3.60255 3.72565 3.88671 4.07134 4.18756 4.52113 4.64817 4.67546 4.84488 4.88087 4.92354 5.00729 5.11420 5.19796 5.28131 5.34976 5.41377 5.55515 5.58989 5.64574 5.71107 5.83485 5.86277 5.96064 5.99344 6.00947 6.03348 6.12221 6.18501 6.22535 6.27458 6.37860 6.45075 6.47565 6.59328 6.68398 6.75102 7.00843 7.27309 7.56478 7.84673 8.28053 8.78013 9.24358 10.10767 10.25311 11.40640 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022354 B = 0.002359 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.278742 B =11868.103003 C =12452.820402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.045 4.045 3 Si 1.082 2.918 4 H -0.296 1.296 5 H -0.288 1.288 6 H -0.295 1.295 7 C -0.330 4.330 8 H 0.065 0.935 9 N -0.732 5.732 10 C 0.204 3.796 11 H 0.054 0.946 12 C -0.142 4.142 13 C -0.099 4.099 14 C -0.126 4.126 15 H 0.087 0.913 16 C 0.116 3.884 17 N -0.622 5.622 18 C 0.574 3.426 19 O -0.527 6.527 20 C -0.108 4.108 21 C -0.036 4.036 22 C -0.166 4.166 23 C -0.017 4.017 24 C -0.218 4.218 25 C 0.090 3.910 26 N -0.429 5.429 27 H 0.445 0.555 28 N -0.278 5.278 29 C 0.136 3.864 30 C 0.136 3.864 31 C -0.120 4.120 32 H 0.073 0.927 33 H 0.255 0.745 34 H 0.367 0.633 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.138 0.862 42 H 0.129 0.871 43 H 0.127 0.873 44 H 0.191 0.809 45 H 0.069 0.931 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.066 -30.474 0.952 30.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.243 4.243 3 Si 0.913 3.087 4 H -0.223 1.223 5 H -0.214 1.214 6 H -0.222 1.222 7 C -0.461 4.461 8 H 0.083 0.917 9 N -0.374 5.374 10 C 0.093 3.907 11 H 0.072 0.928 12 C -0.183 4.183 13 C -0.138 4.138 14 C -0.146 4.146 15 H 0.105 0.895 16 C -0.006 4.006 17 N -0.358 5.358 18 C 0.363 3.637 19 O -0.404 6.404 20 C -0.115 4.115 21 C -0.059 4.059 22 C -0.186 4.186 23 C -0.037 4.037 24 C -0.229 4.229 25 C -0.068 4.068 26 N -0.129 5.129 27 H 0.289 0.711 28 N -0.104 5.104 29 C -0.022 4.022 30 C 0.015 3.985 31 C -0.140 4.140 32 H 0.092 0.908 33 H 0.066 0.934 34 H 0.201 0.799 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.155 0.845 42 H 0.147 0.853 43 H 0.145 0.855 44 H 0.208 0.792 45 H 0.087 0.913 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.638 -27.909 2.629 28.040 hybrid contribution -0.322 -2.435 -0.177 2.462 sum 0.316 -30.344 2.453 30.445 Atomic orbital electron populations 1.70853 1.06053 1.28452 1.53619 1.25752 0.97053 1.00989 1.00475 0.83210 0.73867 0.75405 0.76253 1.22333 1.21444 1.22171 1.20062 0.92020 0.85735 1.48297 0.91704 1.42509 1.04679 1.00673 1.89503 1.19873 0.93693 0.84319 0.92798 0.92752 1.23760 0.99913 0.94215 1.00417 1.21860 1.01207 0.97005 0.93700 1.22578 0.99286 0.94947 0.97786 0.89510 1.22052 0.99164 0.98675 0.80683 1.49927 1.68723 1.09876 1.07248 1.17615 0.77581 0.84262 0.84239 1.90838 1.52957 1.77142 1.19422 1.19760 1.05971 0.90560 0.95189 1.21449 0.93289 0.97481 0.93652 1.20364 1.04758 0.92015 1.01444 1.20279 0.93497 0.99130 0.90825 1.19584 1.11148 0.92350 0.99777 1.22774 0.95971 0.97873 0.90140 1.46522 1.40618 1.05999 1.19730 0.71062 1.77805 1.25646 0.92431 1.14482 1.21506 0.95769 0.92873 0.92068 1.20964 1.01621 0.78795 0.97075 1.22060 1.01365 0.96239 0.94330 0.90827 0.93356 0.79937 0.90852 0.92615 0.91542 0.92062 0.90759 0.90181 0.84457 0.85308 0.85548 0.79238 0.91257 0.90685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.27 13.70 55.49 0.76 -28.51 16 2 C -0.05 -1.31 5.50 -17.43 -0.10 -1.41 16 3 Si 1.08 26.18 29.92 -169.99 -5.09 21.10 16 4 H -0.30 -7.02 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.33 -9.20 9.97 -15.06 -0.15 -9.35 16 8 H 0.06 1.79 7.83 -52.49 -0.41 1.38 16 9 N -0.73 -17.97 5.12 -53.45 -0.27 -18.24 16 10 C 0.20 3.96 3.43 -67.96 -0.23 3.73 16 11 H 0.05 1.11 8.11 -51.93 -0.42 0.69 16 12 C -0.14 -2.38 6.74 -23.33 -0.16 -2.53 16 13 C -0.10 -1.26 6.62 -25.66 -0.17 -1.43 16 14 C -0.13 -1.63 3.10 -89.45 -0.28 -1.90 16 15 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 16 C 0.12 1.33 4.92 -2.62 -0.01 1.32 16 17 N -0.62 -9.39 3.44 -172.28 -0.59 -9.98 16 18 C 0.57 9.74 7.56 -12.63 -0.10 9.64 16 19 O -0.53 -11.14 17.28 5.24 0.09 -11.05 16 20 C -0.11 -1.51 5.65 -102.74 -0.58 -2.09 16 21 C -0.04 -0.37 8.14 -39.20 -0.32 -0.69 16 22 C -0.17 -1.29 9.83 -40.19 -0.39 -1.69 16 23 C -0.02 -0.12 10.02 -39.46 -0.40 -0.52 16 24 C -0.22 -2.07 6.34 -105.21 -0.67 -2.74 16 25 C 0.09 0.56 12.08 -16.58 -0.20 0.36 16 26 N -0.43 -3.46 7.18 30.86 0.22 -3.24 16 27 H 0.44 1.83 8.96 -182.69 -1.64 0.20 16 28 N -0.28 -3.94 12.67 34.36 0.44 -3.50 16 29 C 0.14 1.87 7.33 -80.98 -0.59 1.28 16 30 C 0.14 2.29 6.83 -4.12 -0.03 2.27 16 31 C -0.12 -1.95 2.19 -91.23 -0.20 -2.15 16 32 H 0.07 1.23 7.77 -51.94 -0.40 0.83 16 33 H 0.26 7.77 6.77 -40.82 -0.28 7.50 16 34 H 0.37 9.34 6.46 -40.82 -0.26 9.08 16 35 H 0.07 1.40 7.98 -51.93 -0.41 0.98 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.74 7.06 -51.93 -0.37 0.37 16 40 H 0.08 0.80 7.32 -51.93 -0.38 0.42 16 41 H 0.14 1.20 5.67 -52.49 -0.30 0.90 16 42 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 43 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 44 H 0.19 0.19 8.06 -52.48 -0.42 -0.23 16 45 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 46 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 373.84 15.07 5.63 5.63 Total: -1.00 -38.46 373.84 -10.85 -49.32 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -7.47 Total: 6.40 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -4.57 Total: -7.92 kcal Atomic # 7 Polarization: -64.04 SS G_CDS: 0.55 Total: -63.48 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.09 Total: -11.05 kcal Atomic # 14 Polarization: 26.18 SS G_CDS: -5.09 Total: 21.10 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -38.46 -10.85 -49.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026329417.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.532 kcal (2) G-P(sol) polarization free energy of solvation -38.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds