Wall clock time and date at job start Tue Mar 31 2020 23:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99800 * 2 1 4 4 H 1.48498 * 109.46993 * 269.99449 * 3 2 1 5 5 H 1.48501 * 109.47082 * 29.99877 * 3 2 1 6 6 H 1.48504 * 109.46718 * 149.99750 * 3 2 1 7 7 C 1.38811 * 120.00394 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99419 * 0.02562 * 7 2 1 9 9 N 1.36929 * 120.00231 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99963 * 180.02562 * 9 7 2 11 11 H 1.08997 * 110.48141 * 32.33827 * 10 9 7 12 12 C 1.55054 * 110.53837 * 269.51754 * 10 9 7 13 13 C 1.55054 * 102.11603 * 201.32985 * 12 10 9 14 14 C 1.54317 * 103.93230 * 40.05412 * 13 12 10 15 15 H 1.09010 * 112.36018 * 97.61271 * 14 13 12 16 16 C 1.55736 * 109.24410 * 223.03828 * 14 13 12 17 17 N 1.47214 * 106.44807 * 132.62374 * 16 14 13 18 18 C 1.34779 * 126.70494 * 148.32376 * 17 16 14 19 19 O 1.21641 * 119.99650 * 354.92120 * 18 17 16 20 20 C 1.47163 * 119.99820 * 174.92165 * 18 17 16 21 21 C 1.38591 * 120.72938 * 324.71847 * 20 18 17 22 22 C 1.38922 * 121.36272 * 179.69605 * 21 20 18 23 23 C 1.35824 * 122.59816 * 0.62607 * 22 21 20 24 24 C 1.40837 * 120.55722 * 359.66886 * 23 22 21 25 25 C 1.38421 * 134.90175 * 180.02562 * 24 23 22 26 26 N 1.33888 * 107.84890 * 179.97438 * 25 24 23 27 27 H 0.97003 * 125.02346 * 180.02562 * 26 25 24 28 28 N 1.39987 * 109.95944 * 359.97438 * 26 25 24 29 29 C 1.31470 * 109.01420 * 0.02562 * 28 26 25 30 30 C 1.47214 * 106.59357 * 328.30796 * 17 16 14 31 31 C 1.53773 * 106.38069 * 31.27572 * 30 17 16 32 32 H 1.09005 * 111.70628 * 103.62849 * 31 30 17 33 33 H 0.97005 * 119.99799 * 0.02562 * 1 2 3 34 34 H 0.96996 * 120.00456 * 0.02562 * 9 7 2 35 35 H 1.09003 * 110.90711 * 319.53525 * 12 10 9 36 36 H 1.09004 * 110.90472 * 83.12357 * 12 10 9 37 37 H 1.09009 * 110.53329 * 281.44782 * 13 12 10 38 38 H 1.08988 * 110.65845 * 158.73180 * 13 12 10 39 39 H 1.09003 * 110.39170 * 13.18524 * 16 14 13 40 40 H 1.08997 * 109.69742 * 251.68696 * 16 14 13 41 41 H 1.08005 * 119.31335 * 359.97438 * 21 20 18 42 42 H 1.08003 * 118.69742 * 180.30048 * 22 21 20 43 43 H 1.07998 * 119.71867 * 179.69616 * 23 22 21 44 44 H 1.07997 * 126.07634 * 359.97392 * 25 24 23 45 45 H 1.09002 * 110.07659 * 272.04408 * 30 17 16 46 46 H 1.09003 * 110.11924 * 150.53268 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4708 0.0000 11 1 3.5555 -3.2325 -0.5458 12 6 4.3953 -2.9354 1.4519 13 6 5.5897 -3.9046 1.2564 14 6 6.4656 -3.2056 0.1955 15 1 7.2895 -2.6473 0.6404 16 6 6.9552 -4.2594 -0.8414 17 7 6.7124 -3.6789 -2.1722 18 6 7.4430 -3.8839 -3.2861 19 8 8.4665 -4.5389 -3.2300 20 6 7.0024 -3.3155 -4.5700 21 6 5.6545 -3.2267 -4.8798 22 6 5.2237 -2.6868 -6.0852 23 6 6.0843 -2.2287 -7.0309 24 6 7.4755 -2.2787 -6.8175 25 6 8.5903 -1.9084 -7.5498 26 7 9.6752 -2.2017 -6.8221 27 1 10.5911 -2.0441 -7.0999 28 7 9.2925 -2.7685 -5.6007 29 6 7.9804 -2.8354 -5.5519 30 6 5.5154 -2.8308 -2.0489 31 6 5.5169 -2.2849 -0.6113 32 1 5.8370 -1.2435 -0.5758 33 1 -0.4850 0.8401 -0.0004 34 1 3.8647 -0.3621 -0.0004 35 1 4.6780 -2.0921 2.0821 36 1 3.5341 -3.4584 1.8679 37 1 5.2422 -4.8704 0.8892 38 1 6.1420 -4.0271 2.1879 39 1 6.3964 -5.1888 -0.7310 40 1 8.0204 -4.4441 -0.7025 41 1 4.9237 -3.5804 -4.1675 42 1 4.1627 -2.6340 -6.2801 43 1 5.6984 -1.8223 -7.9541 44 1 8.5857 -1.4622 -8.5332 45 1 4.6173 -3.4234 -2.2230 46 1 5.5641 -2.0076 -2.7617 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026329419.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:56 Heat of formation + Delta-G solvation = 85.221132 kcal Electronic energy + Delta-G solvation = -29376.310705 eV Core-core repulsion = 25460.812488 eV Total energy + Delta-G solvation = -3915.498217 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.47610 -40.27148 -38.42219 -36.96902 -35.20895 -33.51375 -32.29473 -31.37639 -30.94448 -29.56113 -29.35563 -28.28375 -25.27936 -25.09537 -23.60834 -22.51533 -22.00095 -21.50115 -20.28491 -19.29489 -19.10503 -18.30659 -17.61083 -17.44015 -16.62766 -15.95078 -15.66403 -15.30536 -15.13890 -14.97772 -14.53839 -14.23882 -13.94462 -13.75237 -13.50274 -13.20976 -12.77819 -12.68113 -12.65302 -12.24975 -12.12302 -12.04436 -11.88358 -11.71615 -11.34849 -10.87985 -10.82906 -10.73908 -10.67154 -10.48608 -10.39678 -10.34832 -10.32120 -9.99988 -9.68968 -9.59637 -9.06314 -8.91562 -8.59204 -7.84863 -7.27670 -5.79127 -3.14638 0.16050 1.59905 2.01474 2.38237 2.87317 3.05577 3.36004 3.39078 3.44414 3.69347 3.98891 4.22165 4.46125 4.57207 4.65187 4.77187 4.81037 4.89124 4.95370 5.11737 5.14211 5.24171 5.33690 5.41802 5.48660 5.53780 5.60302 5.63883 5.72287 5.81274 5.89312 5.91893 6.01004 6.05999 6.10435 6.14065 6.17990 6.25569 6.33403 6.39219 6.41346 6.58428 6.61103 6.73492 6.76323 6.91931 7.35269 7.61850 7.97109 8.26890 8.40172 9.18356 9.91110 10.10548 11.39110 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011199 B = 0.003438 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.728768 B = 8141.311102 C = 9798.839193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.882 3.118 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.243 4.243 8 H 0.091 0.909 9 N -0.745 5.745 10 C 0.189 3.811 11 H 0.068 0.932 12 C -0.142 4.142 13 C -0.116 4.116 14 C -0.097 4.097 15 H 0.086 0.914 16 C 0.112 3.888 17 N -0.614 5.614 18 C 0.581 3.419 19 O -0.533 6.533 20 C -0.118 4.118 21 C -0.027 4.027 22 C -0.164 4.164 23 C -0.016 4.016 24 C -0.217 4.217 25 C 0.090 3.910 26 N -0.431 5.431 27 H 0.444 0.556 28 N -0.282 5.282 29 C 0.138 3.862 30 C 0.105 3.895 31 C -0.112 4.112 32 H 0.085 0.915 33 H 0.259 0.741 34 H 0.361 0.639 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.140 0.860 42 H 0.132 0.868 43 H 0.128 0.872 44 H 0.191 0.809 45 H 0.078 0.922 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.312 -5.292 -13.919 22.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.190 4.190 3 Si 0.712 3.288 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.373 4.373 8 H 0.109 0.891 9 N -0.386 5.386 10 C 0.079 3.921 11 H 0.086 0.914 12 C -0.183 4.183 13 C -0.154 4.154 14 C -0.117 4.117 15 H 0.104 0.896 16 C -0.011 4.011 17 N -0.347 5.347 18 C 0.371 3.629 19 O -0.411 6.411 20 C -0.124 4.124 21 C -0.050 4.050 22 C -0.183 4.183 23 C -0.037 4.037 24 C -0.228 4.228 25 C -0.067 4.067 26 N -0.131 5.131 27 H 0.288 0.712 28 N -0.108 5.108 29 C -0.020 4.020 30 C -0.017 4.017 31 C -0.133 4.133 32 H 0.104 0.896 33 H 0.069 0.931 34 H 0.194 0.806 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.158 0.842 42 H 0.150 0.850 43 H 0.145 0.855 44 H 0.207 0.793 45 H 0.096 0.904 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 17.789 -5.978 -13.338 23.024 hybrid contribution 0.246 1.690 -0.606 1.812 sum 18.036 -4.288 -13.944 23.197 Atomic orbital electron populations 1.69700 1.05106 1.25808 1.57492 1.24659 0.95182 0.97130 1.02024 0.86596 0.79249 0.85157 0.77791 1.21069 1.21822 1.20343 1.19067 0.80536 0.94671 1.42998 0.89146 1.42809 1.04050 1.01868 1.89887 1.21232 0.88589 0.89275 0.93030 0.91425 1.23256 0.96550 0.98234 1.00239 1.22467 0.96706 0.98649 0.97598 1.22905 0.97873 0.95680 0.95249 0.89575 1.22528 1.01723 0.95962 0.80876 1.48477 1.29246 1.47891 1.09128 1.17580 0.82609 0.80304 0.82450 1.90803 1.23760 1.40843 1.85685 1.19651 0.91358 1.07649 0.93744 1.21502 0.93719 0.92983 0.96755 1.20429 1.00414 1.03250 0.94239 1.20303 0.89897 0.94928 0.98524 1.19591 0.94598 1.12397 0.96173 1.22761 0.86517 0.99471 0.97982 1.46480 1.09173 1.44257 1.13147 0.71171 1.77748 1.12454 1.21716 0.98907 1.21474 0.90310 0.96642 0.93574 1.22472 0.87190 0.94103 0.97974 1.22951 0.97497 0.99545 0.93276 0.89639 0.93070 0.80594 0.91718 0.91642 0.91410 0.92058 0.91035 0.90684 0.84248 0.84987 0.85461 0.79260 0.90419 0.90321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.46 13.97 55.49 0.78 -27.69 16 2 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 3 Si 0.88 21.44 27.74 -169.99 -4.71 16.72 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.37 6.52 56.52 0.37 -6.00 16 7 C -0.24 -6.47 10.44 -15.06 -0.16 -6.63 16 8 H 0.09 2.58 8.06 -52.48 -0.42 2.16 16 9 N -0.74 -16.36 5.01 -51.71 -0.26 -16.62 16 10 C 0.19 3.28 3.03 -66.15 -0.20 3.08 16 11 H 0.07 1.20 7.14 -51.93 -0.37 0.83 16 12 C -0.14 -2.25 6.60 -24.56 -0.16 -2.41 16 13 C -0.12 -1.44 6.37 -24.96 -0.16 -1.60 16 14 C -0.10 -1.25 4.01 -87.48 -0.35 -1.60 16 15 H 0.09 1.06 8.14 -51.92 -0.42 0.64 16 16 C 0.11 1.47 6.62 -2.19 -0.01 1.46 16 17 N -0.61 -8.94 3.32 -171.71 -0.57 -9.51 16 18 C 0.58 9.63 7.56 -12.64 -0.10 9.54 16 19 O -0.53 -10.56 17.13 5.24 0.09 -10.47 16 20 C -0.12 -1.74 5.61 -102.74 -0.58 -2.32 16 21 C -0.03 -0.33 7.99 -39.20 -0.31 -0.64 16 22 C -0.16 -1.67 9.83 -40.19 -0.39 -2.06 16 23 C -0.02 -0.15 10.02 -39.46 -0.40 -0.55 16 24 C -0.22 -2.35 6.34 -105.21 -0.67 -3.02 16 25 C 0.09 0.65 12.08 -16.59 -0.20 0.45 16 26 N -0.43 -3.77 7.18 30.86 0.22 -3.55 16 27 H 0.44 2.07 8.96 -182.68 -1.64 0.43 16 28 N -0.28 -4.12 12.67 34.35 0.44 -3.69 16 29 C 0.14 2.02 7.34 -80.98 -0.59 1.42 16 30 C 0.11 1.45 4.77 -3.25 -0.02 1.44 16 31 C -0.11 -1.65 3.55 -88.54 -0.31 -1.97 16 32 H 0.09 1.31 7.81 -51.93 -0.41 0.91 16 33 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 34 H 0.36 7.92 5.48 -40.82 -0.22 7.70 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.07 0.79 7.22 -51.92 -0.37 0.41 16 38 H 0.06 0.69 8.14 -51.94 -0.42 0.26 16 39 H 0.07 0.87 7.20 -51.93 -0.37 0.50 16 40 H 0.07 1.03 7.88 -51.93 -0.41 0.62 16 41 H 0.14 1.54 5.89 -52.48 -0.31 1.23 16 42 H 0.13 1.07 8.06 -52.48 -0.42 0.64 16 43 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 44 H 0.19 0.40 8.06 -52.49 -0.42 -0.02 16 45 H 0.08 1.03 6.39 -51.93 -0.33 0.70 16 46 H 0.08 1.09 6.78 -51.93 -0.35 0.74 16 LS Contribution 369.26 15.07 5.56 5.56 Total: -1.00 -36.74 369.26 -10.50 -47.24 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -7.34 Total: 7.33 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -4.71 Total: -5.33 kcal Atomic # 7 Polarization: -61.66 SS G_CDS: 0.60 Total: -61.05 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.47 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.71 Total: 16.72 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.74 -10.50 -47.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026329419.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.461 kcal (2) G-P(sol) polarization free energy of solvation -36.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds