Wall clock time and date at job start Tue Mar 31 2020 23:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 119.99710 * 2 1 4 4 H 1.48504 * 109.47101 * 269.99784 * 3 2 1 5 5 H 1.48497 * 109.47152 * 29.99878 * 3 2 1 6 6 H 1.48498 * 109.46926 * 150.00102 * 3 2 1 7 7 C 1.38815 * 119.99973 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99468 * 180.02562 * 7 2 1 9 9 N 1.36930 * 119.99978 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99998 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.03600 * 33.83562 * 10 9 7 12 12 C 1.53703 * 109.90420 * 272.68111 * 10 9 7 13 13 C 1.55348 * 107.06473 * 241.20627 * 12 10 9 14 14 C 1.54485 * 104.21795 * 337.73345 * 13 12 10 15 15 H 1.09000 * 113.38229 * 271.17746 * 14 13 12 16 16 C 1.54122 * 108.73195 * 144.08103 * 14 13 12 17 17 N 1.47062 * 107.53186 * 271.54463 * 16 14 13 18 18 C 1.34769 * 125.71265 * 181.97034 * 17 16 14 19 19 O 1.21600 * 120.00371 * 184.87137 * 18 17 16 20 20 C 1.47518 * 119.99681 * 4.87094 * 18 17 16 21 21 C 1.41040 * 119.39438 * 137.51300 * 20 18 17 22 22 C 1.35191 * 121.65561 * 179.97438 * 21 20 18 23 23 C 1.41373 * 119.93029 * 359.97438 * 22 21 20 24 24 N 1.31931 * 134.39892 * 180.02562 * 23 22 21 25 25 N 1.39918 * 109.06629 * 179.97438 * 24 23 22 26 26 H 0.97001 * 124.98468 * 179.97438 * 25 24 23 27 27 C 1.33809 * 110.02507 * 0.26683 * 25 24 23 28 28 C 1.38540 * 107.83976 * 359.57531 * 27 25 24 29 29 C 1.38221 * 119.39423 * 317.48701 * 20 18 17 30 30 C 1.47391 * 108.58011 * 2.23128 * 17 16 14 31 31 C 1.53792 * 109.90668 * 154.99875 * 10 9 7 32 32 H 1.09004 * 113.27739 * 264.65173 * 31 10 9 33 33 H 0.97000 * 120.00381 * 0.02562 * 1 2 3 34 34 H 0.96997 * 120.00558 * 359.97438 * 9 7 2 35 35 H 1.09004 * 110.01100 * 1.12326 * 12 10 9 36 36 H 1.08999 * 110.01986 * 122.46296 * 12 10 9 37 37 H 1.09003 * 111.17640 * 218.84195 * 13 12 10 38 38 H 1.09001 * 110.15269 * 96.11456 * 13 12 10 39 39 H 1.09001 * 109.83547 * 152.04350 * 16 14 13 40 40 H 1.08997 * 109.92004 * 31.08623 * 16 14 13 41 41 H 1.08000 * 119.17393 * 359.95424 * 21 20 18 42 42 H 1.08002 * 120.03597 * 179.97438 * 22 21 20 43 43 H 1.08004 * 126.07945 * 179.69647 * 27 25 24 44 44 H 1.08004 * 120.32170 * 0.04345 * 29 20 18 45 45 H 1.09003 * 110.33395 * 93.72760 * 30 17 16 46 46 H 1.09007 * 110.33055 * 215.95135 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6526 0.7000 6 1 3.5476 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9815 -3.5549 0.5697 12 6 2.3783 -4.0761 -1.4442 13 6 1.6738 -5.4387 -1.6900 14 6 1.4702 -6.0215 -0.2738 15 1 2.3133 -6.6185 0.0736 16 6 0.1285 -6.7791 -0.2386 17 7 -0.9173 -5.8114 0.1254 18 6 -2.2241 -6.0927 0.2973 19 8 -3.0162 -5.1954 0.5119 20 6 -2.6935 -7.4893 0.2250 21 6 -3.6364 -7.9523 1.1662 22 6 -4.0980 -9.2227 1.1420 23 6 -3.6350 -10.1228 0.1550 24 7 -3.8822 -11.3870 -0.1302 25 7 -3.1195 -11.7623 -1.2415 26 1 -3.1233 -12.6437 -1.6467 27 6 -2.3793 -10.7289 -1.6595 28 6 -2.6510 -9.6506 -0.8332 29 6 -2.2017 -8.3201 -0.7642 30 6 -0.2982 -4.4811 0.2648 31 6 1.1850 -4.7655 0.6106 32 1 1.3741 -4.9270 1.6719 33 1 -0.4851 0.8400 -0.0004 34 1 0.3556 -2.3881 0.0002 35 1 2.0061 -3.3259 -2.1418 36 1 3.4544 -4.1984 -1.5673 37 1 2.2985 -6.1029 -2.2873 38 1 0.7116 -5.2814 -2.1773 39 1 0.1722 -7.5743 0.5057 40 1 -0.0848 -7.2026 -1.2200 41 1 -3.9985 -7.2750 1.9255 42 1 -4.8198 -9.5497 1.8759 43 1 -1.6936 -10.7340 -2.4939 44 1 -1.4797 -7.9505 -1.4775 45 1 -0.3718 -3.9290 -0.6722 46 1 -0.7747 -3.9242 1.0717 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026341149.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:21 Heat of formation + Delta-G solvation = 89.229522 kcal Electronic energy + Delta-G solvation = -29261.056508 eV Core-core repulsion = 25345.732108 eV Total energy + Delta-G solvation = -3915.324400 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.63482 -40.44222 -38.63803 -36.77346 -35.09727 -33.26987 -32.51781 -31.04752 -30.96521 -29.91241 -28.50788 -28.36478 -25.51773 -25.00392 -23.69932 -23.20570 -22.15798 -21.10021 -19.70761 -19.54878 -18.84987 -18.50448 -17.58653 -17.20419 -16.76886 -15.80946 -15.72793 -15.28171 -14.97851 -14.84566 -14.42272 -14.16239 -14.06663 -13.77105 -13.38866 -13.26330 -13.01915 -12.75779 -12.46151 -12.43157 -12.16727 -11.93385 -11.75049 -11.58635 -11.27876 -10.81263 -10.73200 -10.67795 -10.64712 -10.54287 -10.38524 -10.23569 -10.13252 -9.85647 -9.62863 -9.58326 -9.11296 -8.88505 -8.39506 -7.92652 -6.94033 -5.73131 -3.03142 0.20786 1.33062 2.03795 2.28952 2.89392 3.14918 3.45498 3.50489 3.52773 3.65145 3.90334 4.22735 4.46210 4.58169 4.62700 4.64574 4.78917 4.90592 5.01458 5.04328 5.22943 5.31982 5.43820 5.46684 5.51269 5.55274 5.63796 5.77730 5.81043 5.89257 5.95753 6.00160 6.04867 6.07520 6.10743 6.25513 6.29254 6.39622 6.48164 6.52545 6.53123 6.59610 6.63707 6.69573 6.80213 7.11045 7.20179 7.72476 7.73379 8.35154 8.45006 9.55710 10.12885 10.46152 11.48985 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022360 B = 0.002541 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.916320 B =11018.183113 C =11887.415303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.905 3.095 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.182 3.818 11 H 0.054 0.946 12 C -0.144 4.144 13 C -0.116 4.116 14 C -0.103 4.103 15 H 0.099 0.901 16 C 0.104 3.896 17 N -0.611 5.611 18 C 0.571 3.429 19 O -0.531 6.531 20 C -0.150 4.150 21 C -0.032 4.032 22 C -0.112 4.112 23 C 0.118 3.882 24 N -0.311 5.311 25 N -0.424 5.424 26 H 0.444 0.556 27 C 0.096 3.904 28 C -0.214 4.214 29 C -0.007 4.007 30 C 0.117 3.883 31 C -0.104 4.104 32 H 0.090 0.910 33 H 0.256 0.744 34 H 0.387 0.613 35 H 0.074 0.926 36 H 0.050 0.950 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.136 0.864 42 H 0.134 0.866 43 H 0.192 0.808 44 H 0.137 0.863 45 H 0.083 0.917 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.282 -26.422 -3.760 26.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.368 5.368 10 C 0.072 3.928 11 H 0.072 0.928 12 C -0.185 4.185 13 C -0.154 4.154 14 C -0.123 4.123 15 H 0.117 0.883 16 C -0.019 4.019 17 N -0.345 5.345 18 C 0.360 3.640 19 O -0.408 6.408 20 C -0.155 4.155 21 C -0.055 4.055 22 C -0.133 4.133 23 C -0.037 4.037 24 N -0.139 5.139 25 N -0.123 5.123 26 H 0.289 0.711 27 C -0.062 4.062 28 C -0.224 4.224 29 C -0.028 4.028 30 C -0.004 4.004 31 C -0.124 4.124 32 H 0.109 0.891 33 H 0.066 0.934 34 H 0.223 0.777 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.154 0.846 42 H 0.151 0.849 43 H 0.209 0.791 44 H 0.154 0.846 45 H 0.101 0.899 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.396 -26.849 -3.261 27.152 hybrid contribution 0.700 1.103 -0.648 1.459 sum -1.695 -25.746 -3.909 26.096 Atomic orbital electron populations 1.69660 1.05047 1.25753 1.57295 1.24756 0.95476 0.97673 1.02934 0.86221 0.78630 0.84050 0.77440 1.21804 1.21820 1.20823 1.19230 0.90972 0.84143 1.43024 0.91195 1.42724 1.05971 0.99652 1.88492 1.20637 0.93981 0.85649 0.92577 0.92836 1.23168 0.98888 0.95609 1.00798 1.22544 1.00717 0.97218 0.94889 1.23065 0.95633 0.96398 0.97164 0.88286 1.22232 0.87766 0.92196 0.99716 1.48516 1.06379 1.10937 1.68644 1.17859 0.80818 0.88215 0.77147 1.90846 1.53205 1.47652 1.49072 1.19525 1.02205 0.93779 0.99952 1.20586 0.93241 0.94872 0.96801 1.19735 1.03094 0.91807 0.98664 1.21063 0.95391 0.91336 0.95867 1.77663 1.19030 1.13726 1.03487 1.46320 1.30269 1.12650 1.23069 0.71126 1.22835 0.96578 0.87553 0.99255 1.19512 1.06162 0.95654 1.01077 1.20916 0.95781 0.89932 0.96198 1.22335 0.91809 0.83247 1.03035 1.23345 0.94753 0.95081 0.99262 0.89147 0.93412 0.77667 0.90748 0.93154 0.92219 0.91868 0.91619 0.91491 0.84615 0.84854 0.79108 0.84590 0.89857 0.90032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.26 13.06 55.49 0.72 -27.53 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 4 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.24 -6.59 9.96 -15.06 -0.15 -6.74 16 8 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 9 N -0.73 -17.56 4.78 -52.67 -0.25 -17.81 16 10 C 0.18 3.39 3.22 -67.15 -0.22 3.17 16 11 H 0.05 1.01 8.09 -51.93 -0.42 0.59 16 12 C -0.14 -2.35 6.54 -25.12 -0.16 -2.51 16 13 C -0.12 -1.46 5.70 -24.71 -0.14 -1.60 16 14 C -0.10 -1.21 4.09 -87.52 -0.36 -1.57 16 15 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 16 C 0.10 1.15 4.73 -3.15 -0.01 1.13 16 17 N -0.61 -9.16 3.32 -171.86 -0.57 -9.73 16 18 C 0.57 9.34 7.41 -12.48 -0.09 9.24 16 19 O -0.53 -11.00 17.22 5.28 0.09 -10.91 16 20 C -0.15 -1.95 5.52 -105.06 -0.58 -2.53 16 21 C -0.03 -0.39 9.47 -39.60 -0.37 -0.76 16 22 C -0.11 -1.23 10.05 -39.47 -0.40 -1.63 16 23 C 0.12 1.33 7.49 -82.98 -0.62 0.71 16 24 N -0.31 -3.30 12.69 33.30 0.42 -2.88 16 25 N -0.42 -2.64 7.17 30.87 0.22 -2.42 16 26 H 0.44 1.00 8.96 -182.73 -1.64 -0.64 16 27 C 0.10 0.56 12.09 -16.58 -0.20 0.36 16 28 C -0.21 -2.06 6.32 -105.24 -0.66 -2.73 16 29 C -0.01 -0.08 8.54 -38.69 -0.33 -0.41 16 30 C 0.12 2.08 4.38 -2.54 -0.01 2.07 16 31 C -0.10 -1.62 4.14 -87.45 -0.36 -1.98 16 32 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 33 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 34 H 0.39 10.03 5.29 -40.82 -0.22 9.81 16 35 H 0.07 1.43 7.91 -51.93 -0.41 1.02 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.86 7.40 -51.93 -0.38 0.48 16 39 H 0.07 0.65 8.11 -51.93 -0.42 0.23 16 40 H 0.07 0.61 5.47 -51.93 -0.28 0.33 16 41 H 0.14 1.59 8.05 -52.49 -0.42 1.16 16 42 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 43 H 0.19 0.24 8.06 -52.48 -0.42 -0.18 16 44 H 0.14 1.17 5.36 -52.48 -0.28 0.89 16 45 H 0.08 1.67 6.35 -51.93 -0.33 1.34 16 46 H 0.08 1.67 8.02 -51.92 -0.42 1.25 16 LS Contribution 368.10 15.07 5.55 5.55 Total: -1.00 -36.01 368.10 -10.92 -46.93 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -7.31 Total: 7.68 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -4.77 Total: -6.22 kcal Atomic # 7 Polarization: -60.92 SS G_CDS: 0.55 Total: -60.37 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.09 Total: -10.91 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.01 -10.92 -46.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026341149.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.159 kcal (2) G-P(sol) polarization free energy of solvation -36.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds