Wall clock time and date at job start Tue Mar 31 2020 23:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99963 * 2 1 4 4 H 1.48502 * 109.47145 * 239.99733 * 3 2 1 5 5 H 1.48498 * 109.47050 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47170 * 119.99933 * 3 2 1 7 7 C 1.38814 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99700 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00104 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00258 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47487 * 274.99944 * 10 9 7 12 12 C 1.52997 * 109.47317 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.47060 * 59.99960 * 12 11 10 14 14 N 1.46499 * 109.46840 * 180.02562 * 13 12 11 15 15 C 1.34778 * 119.99771 * 204.99940 * 14 13 12 16 16 O 1.21540 * 120.00160 * 359.97438 * 15 14 13 17 17 C 1.47899 * 119.99711 * 179.97438 * 15 14 13 18 18 N 1.32131 * 120.03818 * 359.72589 * 17 15 14 19 19 C 1.31983 * 122.77134 * 179.69132 * 18 17 15 20 20 C 1.37776 * 121.72742 * 0.59486 * 19 18 17 21 21 C 1.40391 * 118.72847 * 359.70962 * 20 19 18 22 22 C 1.40636 * 122.28090 * 180.02562 * 21 20 19 23 23 C 1.36648 * 117.95196 * 179.97438 * 22 21 20 24 24 C 1.39394 * 119.92551 * 0.02562 * 23 22 21 25 25 N 1.31209 * 121.85064 * 359.97438 * 24 23 22 26 26 C 1.33254 * 121.22707 * 359.97438 * 25 24 23 27 27 C 1.53002 * 109.47233 * 299.99657 * 13 12 11 28 28 C 1.52997 * 109.46817 * 60.00194 * 27 13 12 29 29 H 0.96996 * 120.00649 * 0.02562 * 1 2 3 30 30 H 0.97007 * 120.00049 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47021 * 34.99609 * 10 9 7 32 32 H 1.08996 * 109.46929 * 59.99046 * 11 10 9 33 33 H 1.09002 * 109.46716 * 299.99851 * 11 10 9 34 34 H 1.09002 * 109.47153 * 299.99641 * 12 11 10 35 35 H 1.09001 * 109.46832 * 179.97438 * 12 11 10 36 36 H 1.08992 * 109.47399 * 59.99823 * 13 12 11 37 37 H 0.97006 * 120.00568 * 24.99713 * 14 13 12 38 38 H 1.07998 * 119.13594 * 180.31994 * 19 18 17 39 39 H 1.08004 * 120.63418 * 179.73405 * 20 19 18 40 40 H 1.07999 * 121.02602 * 359.96151 * 22 21 20 41 41 H 1.08002 * 120.03275 * 179.97438 * 23 22 21 42 42 H 1.07994 * 119.06865 * 179.97438 * 24 23 22 43 43 H 1.08993 * 109.47662 * 180.02562 * 27 13 12 44 44 H 1.09002 * 109.47075 * 300.00932 * 27 13 12 45 45 H 1.09002 * 109.47153 * 60.00231 * 28 27 13 46 46 H 1.09001 * 109.47289 * 180.02562 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 2.4220 -4.0356 -1.4364 12 6 3.1876 -5.3603 -1.4363 13 6 2.3109 -6.4559 -0.8264 14 7 3.0442 -7.7242 -0.8258 15 6 2.3710 -8.8918 -0.8255 16 8 1.1556 -8.8926 -0.8253 17 6 3.1113 -10.1722 -0.8254 18 7 4.4326 -10.1722 -0.8312 19 6 5.1470 -11.2820 -0.8254 20 6 4.5538 -12.5255 -0.8251 21 6 3.1521 -12.6045 -0.8249 22 6 2.4692 -13.8339 -0.8240 23 6 1.1030 -13.8077 -0.8233 24 6 0.4309 -12.5864 -0.8239 25 7 1.0735 -11.4425 -0.8247 26 6 2.4053 -11.3983 -0.8245 27 6 1.9470 -6.0771 0.6106 28 6 1.1815 -4.7524 0.6105 29 1 -0.4851 0.8400 -0.0004 30 1 0.3556 -2.3881 0.0005 31 1 2.9688 -3.5505 0.5899 32 1 3.0468 -3.2553 -1.8708 33 1 1.5113 -4.1419 -2.0258 34 1 4.0983 -5.2536 -0.8470 35 1 3.4464 -5.6304 -2.4601 36 1 1.4002 -6.5627 -1.4157 37 1 4.0142 -7.7237 -0.8257 38 1 6.2248 -11.2135 -0.8254 39 1 5.1557 -13.4223 -0.8247 40 1 3.0079 -14.7700 -0.8242 41 1 0.5445 -14.7321 -0.8231 42 1 -0.6490 -12.5818 -0.8238 43 1 1.3229 -6.8578 1.0453 44 1 2.8578 -5.9703 1.1999 45 1 0.2707 -4.8592 0.0212 46 1 0.9227 -4.4823 1.6343 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026507859.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:06 Heat of formation + Delta-G solvation = 39.438958 kcal Electronic energy + Delta-G solvation = -28326.260306 eV Core-core repulsion = 24408.776825 eV Total energy + Delta-G solvation = -3917.483481 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.70989 -39.72177 -38.43886 -37.72510 -34.76235 -34.14031 -32.96978 -31.92692 -31.11489 -30.34757 -30.28938 -27.40876 -25.74863 -24.55058 -24.07182 -23.22818 -22.20412 -21.23564 -20.47097 -19.60087 -18.97214 -17.97624 -17.94745 -16.99015 -16.60228 -16.03402 -15.61140 -15.22776 -15.03661 -14.79883 -14.51939 -14.45471 -13.91798 -13.65337 -13.60568 -13.52218 -13.45686 -13.05051 -12.77383 -12.68016 -12.49575 -12.07929 -11.69721 -11.37392 -11.24257 -10.82426 -10.70518 -10.66146 -10.63390 -10.41751 -10.24597 -10.15865 -10.11639 -9.81608 -9.63211 -9.57028 -9.39083 -8.97114 -8.82460 -8.73672 -6.87690 -5.69380 -2.97641 -0.50400 0.22221 1.22314 2.32834 2.96442 2.99273 3.48216 3.52405 3.53585 3.71164 3.74039 3.81770 3.99424 4.13997 4.26406 4.33633 4.64911 4.65700 4.85791 4.91911 5.02189 5.08976 5.14784 5.18361 5.39858 5.41341 5.58762 5.61107 5.69145 5.76356 5.80044 5.85761 5.95148 5.98505 6.09762 6.14378 6.38659 6.39469 6.41623 6.55057 6.68753 6.74966 6.79610 7.07228 7.16627 7.21785 7.45585 7.66169 7.75956 8.26847 8.49566 9.60169 10.20011 10.54638 11.53368 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.029383 B = 0.001980 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.696165 B =14140.573269 C =14838.038378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.236 4.236 8 H 0.069 0.931 9 N -0.725 5.725 10 C 0.177 3.823 11 C -0.131 4.131 12 C -0.121 4.121 13 C 0.146 3.854 14 N -0.708 5.708 15 C 0.562 3.438 16 O -0.492 6.492 17 C 0.145 3.855 18 N -0.444 5.444 19 C 0.075 3.925 20 C -0.123 4.123 21 C -0.085 4.085 22 C -0.064 4.064 23 C -0.155 4.155 24 C 0.133 3.867 25 N -0.420 5.420 26 C 0.106 3.894 27 C -0.121 4.121 28 C -0.120 4.120 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.046 0.954 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.089 0.911 37 H 0.406 0.594 38 H 0.167 0.833 39 H 0.146 0.854 40 H 0.145 0.855 41 H 0.144 0.856 42 H 0.167 0.833 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.021 -33.554 -2.252 34.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.212 4.212 3 Si 0.737 3.263 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.214 1.214 7 C -0.367 4.367 8 H 0.087 0.913 9 N -0.366 5.366 10 C 0.067 3.933 11 C -0.172 4.172 12 C -0.160 4.160 13 C 0.042 3.958 14 N -0.359 5.359 15 C 0.344 3.656 16 O -0.364 6.364 17 C -0.008 4.008 18 N -0.157 5.157 19 C -0.071 4.071 20 C -0.144 4.144 21 C -0.092 4.092 22 C -0.091 4.091 23 C -0.176 4.176 24 C -0.041 4.041 25 N -0.128 5.128 26 C -0.019 4.019 27 C -0.160 4.160 28 C -0.159 4.159 29 H 0.065 0.935 30 H 0.217 0.783 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.107 0.893 37 H 0.241 0.759 38 H 0.184 0.816 39 H 0.164 0.836 40 H 0.163 0.837 41 H 0.162 0.838 42 H 0.184 0.816 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.388 -31.732 -2.248 32.899 hybrid contribution 0.812 -0.867 -0.051 1.189 sum 9.201 -32.599 -2.298 33.950 Atomic orbital electron populations 1.69650 1.05071 1.25649 1.57850 1.24742 0.95504 0.97631 1.03286 0.86287 0.78502 0.83741 0.77774 1.21356 1.21776 1.21353 1.19203 0.90925 0.84199 1.42400 0.91286 1.42437 1.05822 0.99791 1.88514 1.20244 0.94399 0.86024 0.92643 1.22216 0.99703 0.94135 1.01141 1.21810 0.98715 0.95319 1.00153 1.21153 0.95885 0.81259 0.97458 1.46032 1.10877 1.05165 1.73849 1.17576 0.86978 0.82567 0.78467 1.90880 1.12049 1.86262 1.47186 1.21622 0.89058 0.93105 0.97043 1.67359 1.06443 1.32596 1.09258 1.22597 1.00569 0.86961 0.97013 1.22397 0.93315 1.00042 0.98669 1.18987 0.94911 0.94455 1.00875 1.21429 0.94720 0.96887 0.96018 1.22158 0.95223 1.00354 0.99845 1.23381 1.01408 0.87108 0.92223 1.68333 1.07058 1.28545 1.08834 1.19492 0.90824 0.92416 0.99158 1.21844 1.00531 0.97835 0.95789 1.21757 0.98959 0.93623 1.01587 0.93538 0.78284 0.93606 0.91580 0.92387 0.91749 0.92195 0.89314 0.75880 0.81565 0.83580 0.83689 0.83813 0.81620 0.91988 0.92022 0.92022 0.91662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.72 13.06 55.49 0.72 -28.00 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 3 Si 0.91 22.72 29.55 -169.99 -5.02 17.70 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.24 -6.63 9.93 -15.06 -0.15 -6.78 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -18.55 5.12 -53.43 -0.27 -18.82 16 10 C 0.18 3.57 2.77 -67.93 -0.19 3.38 16 11 C -0.13 -2.36 5.50 -26.73 -0.15 -2.50 16 12 C -0.12 -1.72 5.39 -26.73 -0.14 -1.86 16 13 C 0.15 2.12 2.45 -67.93 -0.17 1.96 16 14 N -0.71 -9.32 5.07 -54.74 -0.28 -9.60 16 15 C 0.56 8.36 7.77 -12.30 -0.10 8.26 16 16 O -0.49 -8.84 14.87 5.33 0.08 -8.76 16 17 C 0.15 1.86 6.81 -82.55 -0.56 1.30 16 18 N -0.44 -4.67 9.48 -9.55 -0.09 -4.76 16 19 C 0.07 0.54 11.12 -17.66 -0.20 0.35 16 20 C -0.12 -0.77 9.93 -38.94 -0.39 -1.15 16 21 C -0.09 -0.72 5.75 -106.79 -0.61 -1.34 16 22 C -0.06 -0.37 9.94 -39.25 -0.39 -0.76 16 23 C -0.15 -0.85 10.03 -39.73 -0.40 -1.25 16 24 C 0.13 1.12 11.14 -17.39 -0.19 0.92 16 25 N -0.42 -5.39 8.49 -10.75 -0.09 -5.48 16 26 C 0.11 1.29 6.61 -84.62 -0.56 0.73 16 27 C -0.12 -1.85 5.49 -26.73 -0.15 -1.99 16 28 C -0.12 -2.14 5.39 -26.73 -0.14 -2.28 16 29 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 30 H 0.38 10.48 7.80 -40.82 -0.32 10.17 16 31 H 0.05 0.94 8.08 -51.93 -0.42 0.53 16 32 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.09 1.45 7.58 -51.93 -0.39 1.06 16 37 H 0.41 4.58 7.95 -40.82 -0.32 4.26 16 38 H 0.17 0.65 8.06 -52.49 -0.42 0.23 16 39 H 0.15 0.37 8.06 -52.48 -0.42 -0.06 16 40 H 0.15 0.33 8.06 -52.49 -0.42 -0.09 16 41 H 0.14 0.30 8.06 -52.49 -0.42 -0.12 16 42 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 44 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 381.49 15.07 5.75 5.75 Total: -1.00 -35.57 381.49 -10.28 -45.85 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -6.50 Total: 9.71 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -4.58 Total: -3.58 kcal Atomic # 7 Polarization: -66.66 SS G_CDS: -0.01 Total: -66.66 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.08 Total: -8.76 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.57 -10.28 -45.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026507859.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.287 kcal (2) G-P(sol) polarization free energy of solvation -35.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds