Wall clock time and date at job start Tue Mar 31 2020 23:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99963 * 2 1 4 4 H 1.48502 * 109.47145 * 239.99733 * 3 2 1 5 5 H 1.48498 * 109.47050 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47170 * 119.99933 * 3 2 1 7 7 C 1.38814 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99700 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00104 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00258 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47487 * 274.99944 * 10 9 7 12 12 C 1.52997 * 109.47317 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.47060 * 59.99960 * 12 11 10 14 14 N 1.46499 * 109.46840 * 180.02562 * 13 12 11 15 15 C 1.34778 * 119.99771 * 204.99940 * 14 13 12 16 16 O 1.21540 * 120.00160 * 359.97438 * 15 14 13 17 17 C 1.47899 * 119.99711 * 179.97438 * 15 14 13 18 18 N 1.32131 * 120.03818 * 359.72589 * 17 15 14 19 19 C 1.31983 * 122.77134 * 179.69132 * 18 17 15 20 20 C 1.37776 * 121.72742 * 0.59486 * 19 18 17 21 21 C 1.40391 * 118.72847 * 359.70962 * 20 19 18 22 22 C 1.40636 * 122.28090 * 180.02562 * 21 20 19 23 23 C 1.36648 * 117.95196 * 179.97438 * 22 21 20 24 24 C 1.39394 * 119.92551 * 0.02562 * 23 22 21 25 25 N 1.31209 * 121.85064 * 359.97438 * 24 23 22 26 26 C 1.33254 * 121.22707 * 359.97438 * 25 24 23 27 27 C 1.53002 * 109.47233 * 299.99657 * 13 12 11 28 28 C 1.52997 * 109.46817 * 60.00194 * 27 13 12 29 29 H 0.96996 * 120.00649 * 0.02562 * 1 2 3 30 30 H 0.97007 * 120.00049 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47021 * 34.99609 * 10 9 7 32 32 H 1.08996 * 109.46929 * 59.99046 * 11 10 9 33 33 H 1.09002 * 109.46716 * 299.99851 * 11 10 9 34 34 H 1.09002 * 109.47153 * 299.99641 * 12 11 10 35 35 H 1.09001 * 109.46832 * 179.97438 * 12 11 10 36 36 H 1.08992 * 109.47399 * 59.99823 * 13 12 11 37 37 H 0.97006 * 120.00568 * 24.99713 * 14 13 12 38 38 H 1.07998 * 119.13594 * 180.31994 * 19 18 17 39 39 H 1.08004 * 120.63418 * 179.73405 * 20 19 18 40 40 H 1.07999 * 121.02602 * 359.96151 * 22 21 20 41 41 H 1.08002 * 120.03275 * 179.97438 * 23 22 21 42 42 H 1.07994 * 119.06865 * 179.97438 * 24 23 22 43 43 H 1.08993 * 109.47662 * 180.02562 * 27 13 12 44 44 H 1.09002 * 109.47075 * 300.00932 * 27 13 12 45 45 H 1.09002 * 109.47153 * 60.00231 * 28 27 13 46 46 H 1.09001 * 109.47289 * 180.02562 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 2.4220 -4.0356 -1.4364 12 6 3.1876 -5.3603 -1.4363 13 6 2.3109 -6.4559 -0.8264 14 7 3.0442 -7.7242 -0.8258 15 6 2.3710 -8.8918 -0.8255 16 8 1.1556 -8.8926 -0.8253 17 6 3.1113 -10.1722 -0.8254 18 7 4.4326 -10.1722 -0.8312 19 6 5.1470 -11.2820 -0.8254 20 6 4.5538 -12.5255 -0.8251 21 6 3.1521 -12.6045 -0.8249 22 6 2.4692 -13.8339 -0.8240 23 6 1.1030 -13.8077 -0.8233 24 6 0.4309 -12.5864 -0.8239 25 7 1.0735 -11.4425 -0.8247 26 6 2.4053 -11.3983 -0.8245 27 6 1.9470 -6.0771 0.6106 28 6 1.1815 -4.7524 0.6105 29 1 -0.4851 0.8400 -0.0004 30 1 0.3556 -2.3881 0.0005 31 1 2.9688 -3.5505 0.5899 32 1 3.0468 -3.2553 -1.8708 33 1 1.5113 -4.1419 -2.0258 34 1 4.0983 -5.2536 -0.8470 35 1 3.4464 -5.6304 -2.4601 36 1 1.4002 -6.5627 -1.4157 37 1 4.0142 -7.7237 -0.8257 38 1 6.2248 -11.2135 -0.8254 39 1 5.1557 -13.4223 -0.8247 40 1 3.0079 -14.7700 -0.8242 41 1 0.5445 -14.7321 -0.8231 42 1 -0.6490 -12.5818 -0.8238 43 1 1.3229 -6.8578 1.0453 44 1 2.8578 -5.9703 1.1999 45 1 0.2707 -4.8592 0.0212 46 1 0.9227 -4.4823 1.6343 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026507859.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:05 Heat of formation + Delta-G solvation = 14.263795 kcal Electronic energy + Delta-G solvation = -28327.351983 eV Core-core repulsion = 24408.776825 eV Total energy + Delta-G solvation = -3918.575158 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.34855 -40.82779 -39.30623 -38.87430 -36.35498 -34.80178 -34.55943 -32.65327 -32.37051 -31.70851 -31.44356 -28.96506 -26.54710 -25.59025 -25.09704 -24.39021 -23.61419 -22.47836 -21.57983 -20.97025 -19.75283 -19.10977 -18.71633 -18.55477 -17.35254 -17.12500 -16.81302 -16.47835 -15.96476 -15.68879 -15.45895 -15.40184 -15.28894 -15.24625 -14.93052 -14.46611 -14.30875 -14.01137 -14.00194 -13.76861 -13.53455 -13.16968 -13.12975 -13.08839 -12.76792 -12.43053 -12.27099 -12.04582 -12.01636 -11.82975 -11.71991 -11.61013 -11.31780 -11.11200 -10.96310 -10.83829 -10.37546 -10.19331 -10.04582 -9.46590 -8.98240 -7.91012 -5.19726 -1.11710 -0.33704 0.64249 1.47750 1.51364 1.57229 1.64683 1.99101 2.17386 2.58388 3.03579 3.05752 3.21096 3.41259 3.42496 3.65251 3.71933 3.74588 3.86448 3.88199 3.94024 4.22607 4.25180 4.28721 4.37958 4.39485 4.47489 4.52793 4.58485 4.58905 4.65241 4.67173 4.85970 4.95401 4.98908 5.10159 5.10398 5.11455 5.22446 5.28477 5.34403 5.47282 5.54621 5.54992 5.61742 5.64944 6.30827 6.43151 6.66444 6.94043 7.23241 7.36021 8.13210 8.36599 9.32684 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.029383 B = 0.001980 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.696165 B =14140.573269 C =14838.038378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.082 4.082 3 Si 0.974 3.026 4 H -0.277 1.277 5 H -0.298 1.298 6 H -0.277 1.277 7 C -0.236 4.236 8 H 0.078 0.922 9 N -0.740 5.740 10 C 0.173 3.827 11 C -0.122 4.122 12 C -0.107 4.107 13 C 0.154 3.846 14 N -0.697 5.697 15 C 0.559 3.441 16 O -0.537 6.537 17 C 0.097 3.903 18 N -0.447 5.447 19 C 0.056 3.944 20 C -0.089 4.089 21 C -0.106 4.106 22 C -0.050 4.050 23 C -0.154 4.154 24 C 0.127 3.873 25 N -0.486 5.486 26 C 0.082 3.918 27 C -0.109 4.109 28 C -0.111 4.111 29 H 0.249 0.751 30 H 0.370 0.630 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.043 0.957 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.417 0.583 38 H 0.203 0.797 39 H 0.196 0.804 40 H 0.191 0.809 41 H 0.184 0.816 42 H 0.179 0.821 43 H 0.053 0.947 44 H 0.077 0.923 45 H 0.050 0.950 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.395 -37.226 -2.361 39.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.274 4.274 3 Si 0.803 3.197 4 H -0.203 1.203 5 H -0.224 1.224 6 H -0.203 1.203 7 C -0.367 4.367 8 H 0.096 0.904 9 N -0.379 5.379 10 C 0.065 3.935 11 C -0.162 4.162 12 C -0.145 4.145 13 C 0.049 3.951 14 N -0.349 5.349 15 C 0.343 3.657 16 O -0.412 6.412 17 C -0.054 4.054 18 N -0.160 5.160 19 C -0.092 4.092 20 C -0.109 4.109 21 C -0.113 4.113 22 C -0.076 4.076 23 C -0.175 4.175 24 C -0.046 4.046 25 N -0.195 5.195 26 C -0.042 4.042 27 C -0.148 4.148 28 C -0.150 4.150 29 H 0.058 0.942 30 H 0.201 0.799 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.254 0.746 38 H 0.220 0.780 39 H 0.213 0.787 40 H 0.209 0.791 41 H 0.201 0.799 42 H 0.196 0.804 43 H 0.072 0.928 44 H 0.095 0.905 45 H 0.068 0.932 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.822 -35.436 -2.360 37.431 hybrid contribution -0.202 0.015 -0.011 0.203 sum 11.621 -35.421 -2.371 37.354 Atomic orbital electron populations 1.69827 1.06698 1.25970 1.59906 1.25600 0.96389 1.01205 1.04178 0.85199 0.77128 0.79163 0.78217 1.20329 1.22440 1.20328 1.19617 0.91481 0.85152 1.40486 0.90393 1.42676 1.05416 1.01138 1.88667 1.20468 0.94228 0.84621 0.94185 1.22001 0.99402 0.95961 0.98879 1.21664 0.98500 0.92665 1.01678 1.20899 0.95456 0.82263 0.96470 1.45841 1.11209 1.04294 1.73587 1.18035 0.86737 0.83671 0.77223 1.90834 1.13988 1.87067 1.49321 1.21189 0.90028 0.92250 1.01975 1.67262 1.05534 1.34606 1.08575 1.23283 1.01995 0.86680 0.97232 1.22973 0.92536 1.01401 0.94037 1.19375 0.96103 0.94324 1.01516 1.21994 0.94878 0.97322 0.93398 1.22520 0.95721 1.00410 0.98816 1.23873 1.02389 0.87623 0.90734 1.68250 1.08217 1.31034 1.12013 1.19690 0.91100 0.93559 0.99870 1.21717 1.00576 0.95851 0.96647 1.21621 0.98494 0.94247 1.00608 0.94186 0.79858 0.93370 0.92715 0.93785 0.89708 0.90410 0.91610 0.74592 0.78030 0.78718 0.79142 0.79859 0.80367 0.92814 0.90450 0.93154 0.92434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.60 13.06 21.65 0.28 -61.32 16 2 C -0.08 -4.84 5.50 84.86 0.47 -4.38 16 3 Si 0.97 47.25 29.55 68.60 2.03 49.27 16 4 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 5 H -0.30 -14.63 7.11 99.48 0.71 -13.93 16 6 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 7 C -0.24 -13.39 9.93 84.03 0.83 -12.55 16 8 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 9 N -0.74 -38.94 5.12 -322.94 -1.65 -40.59 16 10 C 0.17 7.11 2.77 44.99 0.12 7.23 16 11 C -0.12 -4.42 5.50 30.59 0.17 -4.25 16 12 C -0.11 -2.93 5.39 30.59 0.16 -2.77 16 13 C 0.15 4.56 2.45 44.99 0.11 4.67 16 14 N -0.70 -18.74 5.07 -445.37 -2.26 -21.00 16 15 C 0.56 17.65 7.77 86.80 0.67 18.32 16 16 O -0.54 -20.98 14.87 -3.84 -0.06 -21.04 16 17 C 0.10 2.55 6.81 42.46 0.29 2.84 16 18 N -0.45 -9.01 9.48 -184.13 -1.75 -10.76 16 19 C 0.06 0.64 11.12 84.56 0.94 1.58 16 20 C -0.09 -0.73 9.93 22.68 0.23 -0.50 16 21 C -0.11 -1.53 5.75 -21.27 -0.12 -1.66 16 22 C -0.05 -0.37 9.94 22.48 0.22 -0.14 16 23 C -0.15 -1.25 10.03 22.18 0.22 -1.03 16 24 C 0.13 2.12 11.14 85.06 0.95 3.07 16 25 N -0.49 -13.16 8.49 -187.92 -1.60 -14.76 16 26 C 0.08 2.02 6.61 40.63 0.27 2.29 16 27 C -0.11 -3.39 5.49 30.59 0.17 -3.23 16 28 C -0.11 -4.08 5.39 30.60 0.16 -3.92 16 29 H 0.25 15.35 8.31 -92.71 -0.77 14.58 16 30 H 0.37 21.16 7.80 -92.70 -0.72 20.44 16 31 H 0.05 1.97 8.08 -2.39 -0.02 1.95 16 32 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.07 2.29 7.58 -2.39 -0.02 2.27 16 37 H 0.42 9.21 7.95 -92.70 -0.74 8.48 16 38 H 0.20 0.71 8.06 -2.91 -0.02 0.69 16 39 H 0.20 -0.37 8.06 -2.91 -0.02 -0.39 16 40 H 0.19 -0.41 8.06 -2.91 -0.02 -0.43 16 41 H 0.18 -0.06 8.06 -2.91 -0.02 -0.08 16 42 H 0.18 2.11 8.06 -2.91 -0.02 2.09 16 43 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -83.83 381.49 0.43 -83.40 By element: Atomic # 1 Polarization: 31.64 SS G_CDS: -0.44 Total: 31.20 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: 5.87 Total: 5.59 kcal Atomic # 7 Polarization: -141.46 SS G_CDS: -6.97 Total: -148.43 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.06 Total: -21.04 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.27 kcal Total: -83.83 0.43 -83.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026507859.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.666 kcal (2) G-P(sol) polarization free energy of solvation -83.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds