Wall clock time and date at job start Tue Mar 31 2020 23:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99919 * 2 1 4 4 H 1.48503 * 109.47199 * 274.73884 * 3 2 1 5 5 H 1.48498 * 109.47504 * 34.74166 * 3 2 1 6 6 H 1.48504 * 109.46875 * 154.74345 * 3 2 1 7 7 C 1.38810 * 119.99856 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00009 * 196.57661 * 7 2 1 9 9 N 1.36937 * 120.00215 * 16.57409 * 7 2 1 10 10 C 1.47599 * 118.64237 * 27.06101 * 9 7 2 11 11 C 1.53950 * 112.14311 * 137.86591 * 10 9 7 12 12 C 1.50883 * 110.09583 * 319.43837 * 11 10 9 13 13 C 1.52564 * 109.35882 * 91.88424 * 12 11 10 14 14 C 1.47092 * 114.32956 * 274.98697 * 13 12 11 15 15 H 1.09005 * 109.32735 * 302.53695 * 14 13 12 16 16 N 1.46504 * 109.33167 * 182.88679 * 14 13 12 17 17 C 1.34766 * 119.99965 * 154.65034 * 16 14 13 18 18 O 1.21482 * 120.00566 * 0.02562 * 17 16 14 19 19 C 1.48359 * 119.99896 * 180.02562 * 17 16 14 20 20 C 1.40164 * 119.20454 * 179.73278 * 19 17 16 21 21 C 1.36622 * 119.70611 * 179.71792 * 20 19 17 22 22 C 1.40590 * 118.20676 * 0.53904 * 21 20 19 23 23 C 1.40736 * 121.36879 * 179.69722 * 22 21 20 24 24 C 1.36585 * 118.13376 * 180.02562 * 23 22 21 25 25 C 1.39430 * 119.84528 * 0.02562 * 24 23 22 26 26 N 1.31026 * 121.84170 * 0.02562 * 25 24 23 27 27 C 1.33861 * 121.42446 * 359.97438 * 26 25 24 28 28 N 1.31892 * 119.20089 * 359.97438 * 19 17 16 29 29 C 1.44577 * 118.64295 * 207.05819 * 9 7 2 30 30 H 0.97003 * 119.99770 * 359.97438 * 1 2 3 31 31 H 1.08997 * 108.95125 * 17.18337 * 10 9 7 32 32 H 1.09002 * 108.94945 * 258.55095 * 10 9 7 33 33 H 1.08992 * 109.37132 * 199.23967 * 11 10 9 34 34 H 1.09005 * 109.25978 * 79.55697 * 11 10 9 35 35 H 1.09004 * 109.48770 * 331.92356 * 12 11 10 36 36 H 1.08997 * 109.48964 * 211.85410 * 12 11 10 37 37 H 1.08997 * 108.51083 * 153.73022 * 13 12 11 38 38 H 1.09009 * 108.38766 * 36.14971 * 13 12 11 39 39 H 0.97005 * 119.99345 * 334.65216 * 16 14 13 40 40 H 1.08005 * 120.14526 * 359.97438 * 20 19 17 41 41 H 1.07996 * 120.89624 * 180.23617 * 21 20 19 42 42 H 1.08005 * 120.93167 * 0.02562 * 23 22 21 43 43 H 1.08001 * 120.07845 * 180.02562 * 24 23 22 44 44 H 1.07996 * 119.08552 * 179.97438 * 25 24 23 45 45 H 1.09002 * 109.44709 * 150.68756 * 29 9 7 46 46 H 1.08999 * 109.45188 * 30.77102 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3975 2.1043 -1.3953 5 1 1.5014 2.6217 0.7978 6 1 3.5943 1.4132 0.5974 7 6 2.0102 -1.2021 -0.0005 8 1 3.0566 -1.2217 0.2663 9 7 1.3682 -2.3633 -0.3393 10 6 0.2039 -2.2901 -1.2434 11 6 0.2164 -3.4119 -2.2977 12 6 1.6188 -3.6242 -2.8122 13 6 2.3062 -4.7004 -1.9775 14 6 2.9323 -4.2022 -0.7432 15 1 3.6585 -3.4288 -0.9938 16 7 3.6152 -5.3072 -0.0657 17 6 4.6507 -5.0549 0.7591 18 8 5.0176 -3.9112 0.9413 19 6 5.3425 -6.1739 1.4448 20 6 6.4211 -5.8930 2.2947 21 6 7.0620 -6.9152 2.9359 22 6 6.6149 -8.2281 2.7055 23 6 7.2306 -9.3310 3.3261 24 6 6.7429 -10.5777 3.0548 25 6 5.6647 -10.7265 2.1834 26 7 5.0948 -9.6971 1.6067 27 6 5.5222 -8.4481 1.8281 28 7 4.9308 -7.4094 1.2362 29 6 1.8590 -3.6103 0.2033 30 1 -0.4850 0.8401 0.0004 31 1 0.2109 -1.3262 -1.7523 32 1 -0.7086 -2.3698 -0.6526 33 1 -0.4350 -3.1360 -3.1269 34 1 -0.1460 -4.3349 -1.8449 35 1 2.1789 -2.6921 -2.7364 36 1 1.5797 -3.9417 -3.8542 37 1 3.0745 -5.1741 -2.5885 38 1 1.5651 -5.4537 -1.7100 39 1 3.3219 -6.2204 -0.2109 40 1 6.7415 -4.8726 2.4453 41 1 7.8927 -6.7203 3.5978 42 1 8.0652 -9.1955 3.9981 43 1 7.1914 -11.4461 3.5142 44 1 5.2892 -11.7178 1.9772 45 1 1.0324 -4.3142 0.3000 46 1 2.2991 -3.4310 1.1842 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034216184.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:30 Heat of formation + Delta-G solvation = 63.148968 kcal Electronic energy + Delta-G solvation = -29077.043113 eV Core-core repulsion = 25160.587776 eV Total energy + Delta-G solvation = -3916.455338 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.54909 -39.75863 -38.14664 -37.26734 -34.71085 -34.34399 -33.18311 -31.62646 -31.25946 -30.81247 -29.86308 -26.29564 -25.66858 -24.64789 -24.06113 -23.05016 -22.88967 -20.94191 -20.12123 -19.13856 -19.02532 -18.13470 -17.50361 -16.54237 -16.33712 -15.96292 -15.53511 -15.21090 -14.92376 -14.59050 -14.48345 -14.28918 -14.15759 -13.66830 -13.51897 -13.46460 -13.09131 -12.61622 -12.50486 -12.36267 -12.22536 -12.05335 -11.50540 -11.44999 -11.02607 -10.99195 -10.86942 -10.72212 -10.51872 -10.08089 -10.07407 -9.91835 -9.68016 -9.57396 -9.52022 -9.32513 -9.29487 -9.24529 -8.76977 -8.27068 -6.57667 -5.69643 -3.13025 -0.26421 0.16952 1.51970 2.15889 3.08386 3.18126 3.44918 3.45798 3.52212 3.56399 3.87843 4.02300 4.23012 4.28865 4.38215 4.55495 4.62202 4.72602 4.93428 4.99592 5.28865 5.31378 5.41820 5.47544 5.50100 5.52045 5.58826 5.75832 5.81903 5.82823 6.04373 6.08784 6.21855 6.23054 6.36844 6.45519 6.65010 6.68615 6.74406 6.79255 6.88095 6.96860 6.99205 7.15683 7.49930 7.68514 7.76835 7.87277 7.97497 8.43306 8.57359 9.33532 9.98738 10.43121 11.38056 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017483 B = 0.002683 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.147388 B =10431.801153 C =11563.391203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.004 3.996 3 Si 0.899 3.101 4 H -0.288 1.288 5 H -0.293 1.293 6 H -0.277 1.277 7 C -0.255 4.255 8 H 0.070 0.930 9 N -0.583 5.583 10 C 0.176 3.824 11 C -0.144 4.144 12 C -0.100 4.100 13 C -0.113 4.113 14 C 0.112 3.888 15 H 0.090 0.910 16 N -0.696 5.696 17 C 0.559 3.441 18 O -0.515 6.515 19 C 0.156 3.844 20 C -0.128 4.128 21 C -0.049 4.049 22 C -0.146 4.146 23 C -0.045 4.045 24 C -0.177 4.177 25 C 0.157 3.843 26 N -0.459 5.459 27 C 0.302 3.698 28 N -0.438 5.438 29 C 0.158 3.842 30 H 0.252 0.748 31 H 0.073 0.927 32 H 0.025 0.975 33 H 0.052 0.948 34 H 0.045 0.955 35 H 0.077 0.923 36 H 0.048 0.952 37 H 0.049 0.951 38 H 0.055 0.945 39 H 0.405 0.595 40 H 0.159 0.841 41 H 0.150 0.850 42 H 0.144 0.856 43 H 0.144 0.856 44 H 0.168 0.832 45 H 0.033 0.967 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.681 -21.936 4.160 26.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.194 4.194 3 Si 0.729 3.271 4 H -0.216 1.216 5 H -0.219 1.219 6 H -0.202 1.202 7 C -0.385 4.385 8 H 0.088 0.912 9 N -0.304 5.304 10 C 0.052 3.948 11 C -0.183 4.183 12 C -0.138 4.138 13 C -0.151 4.151 14 C 0.006 3.994 15 H 0.108 0.892 16 N -0.346 5.346 17 C 0.341 3.659 18 O -0.390 6.390 19 C -0.002 4.002 20 C -0.148 4.148 21 C -0.075 4.075 22 C -0.151 4.151 23 C -0.072 4.072 24 C -0.197 4.197 25 C -0.020 4.020 26 N -0.167 5.167 27 C 0.063 3.937 28 N -0.151 5.151 29 C 0.028 3.972 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.043 0.957 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.095 0.905 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.240 0.760 40 H 0.176 0.824 41 H 0.167 0.833 42 H 0.162 0.838 43 H 0.162 0.838 44 H 0.185 0.815 45 H 0.051 0.949 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 12.316 -21.163 3.110 24.682 hybrid contribution 1.683 0.518 1.094 2.073 sum 13.999 -20.645 4.204 25.296 Atomic orbital electron populations 1.70094 1.05206 1.25286 1.54379 1.25024 0.95225 0.98349 1.00799 0.86305 0.79418 0.83838 0.77510 1.21556 1.21927 1.20228 1.19334 0.92987 0.84879 1.41281 0.91226 1.43589 1.33855 1.01495 1.51414 1.21036 0.88830 0.95758 0.89217 1.22082 0.95863 1.00669 0.99668 1.20823 0.97076 0.99330 0.96559 1.20579 0.99512 0.99012 0.96025 1.21382 0.96583 0.87767 0.93664 0.89169 1.46081 1.31816 1.11631 1.45112 1.17791 0.80904 0.86954 0.80220 1.90860 1.65276 1.20409 1.62406 1.21741 0.93416 0.90709 0.94296 1.21927 0.95088 1.02111 0.95708 1.21470 0.98483 0.90521 0.97063 1.19737 0.99044 0.95720 1.00579 1.21504 0.97864 0.91563 0.96231 1.22044 0.98700 0.98556 1.00391 1.23144 0.90952 0.97668 0.90283 1.67647 1.28706 0.97560 1.22834 1.19226 0.90606 0.91117 0.92751 1.67416 1.28025 0.97970 1.21650 1.20916 0.93334 0.88470 0.94482 0.93824 0.90857 0.95687 0.92889 0.93597 0.90458 0.93346 0.93274 0.92622 0.76011 0.82352 0.83266 0.83843 0.83839 0.81490 0.94900 0.93256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.65 11.11 55.49 0.62 -26.03 16 2 C 0.00 0.12 4.84 -17.43 -0.08 0.04 16 3 Si 0.90 22.47 29.58 -169.99 -5.03 17.45 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.26 -7.18 9.43 -15.06 -0.14 -7.32 16 8 H 0.07 2.02 7.88 -52.48 -0.41 1.61 16 9 N -0.58 -14.70 2.27 -172.09 -0.39 -15.09 16 10 C 0.18 4.23 4.67 -2.95 -0.01 4.21 16 11 C -0.14 -2.70 5.71 -27.30 -0.16 -2.85 16 12 C -0.10 -1.75 5.51 -28.02 -0.15 -1.90 16 13 C -0.11 -1.86 4.55 -29.79 -0.14 -1.99 16 14 C 0.11 2.11 2.34 -69.78 -0.16 1.94 16 15 H 0.09 1.96 7.57 -51.93 -0.39 1.57 16 16 N -0.70 -11.52 5.04 -56.40 -0.28 -11.80 16 17 C 0.56 9.66 7.75 -12.10 -0.09 9.57 16 18 O -0.52 -10.60 15.94 5.38 0.09 -10.51 16 19 C 0.16 2.26 6.75 -82.95 -0.56 1.70 16 20 C -0.13 -1.49 9.54 -39.44 -0.38 -1.87 16 21 C -0.05 -0.43 9.89 -39.28 -0.39 -0.82 16 22 C -0.15 -1.45 5.75 -106.68 -0.61 -2.06 16 23 C -0.04 -0.29 9.90 -39.24 -0.39 -0.68 16 24 C -0.18 -0.97 10.04 -39.73 -0.40 -1.37 16 25 C 0.16 1.18 11.14 -17.45 -0.19 0.99 16 26 N -0.46 -5.55 10.43 -12.59 -0.13 -5.68 16 27 C 0.30 3.94 7.62 -157.91 -1.20 2.73 16 28 N -0.44 -6.40 9.56 -9.18 -0.09 -6.49 16 29 C 0.16 3.48 5.23 -4.08 -0.02 3.46 16 30 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.07 1.95 6.40 -51.93 -0.33 1.62 16 32 H 0.03 0.65 8.03 -51.93 -0.42 0.23 16 33 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.81 7.31 -51.93 -0.38 0.43 16 35 H 0.08 1.57 7.48 -51.93 -0.39 1.18 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.86 7.35 -51.92 -0.38 0.48 16 39 H 0.40 5.99 7.88 -40.82 -0.32 5.66 16 40 H 0.16 1.75 7.60 -52.48 -0.40 1.35 16 41 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.14 0.45 8.06 -52.48 -0.42 0.03 16 43 H 0.14 0.29 8.06 -52.49 -0.42 -0.13 16 44 H 0.17 0.67 8.06 -52.49 -0.42 0.25 16 45 H 0.03 0.69 8.06 -51.93 -0.42 0.27 16 46 H 0.05 1.19 7.96 -51.93 -0.41 0.78 16 LS Contribution 374.40 15.07 5.64 5.64 Total: -1.00 -34.32 374.40 -11.02 -45.33 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -6.35 Total: 3.42 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: -5.09 Total: 3.77 kcal Atomic # 7 Polarization: -64.82 SS G_CDS: -0.28 Total: -65.10 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.51 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.03 Total: 17.45 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.32 -11.02 -45.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034216184.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.482 kcal (2) G-P(sol) polarization free energy of solvation -34.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds