Wall clock time and date at job start Tue Mar 31 2020 23:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99919 * 2 1 4 4 H 1.48503 * 109.47199 * 274.73884 * 3 2 1 5 5 H 1.48498 * 109.47504 * 34.74166 * 3 2 1 6 6 H 1.48504 * 109.46875 * 154.74345 * 3 2 1 7 7 C 1.38810 * 119.99856 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00009 * 196.57661 * 7 2 1 9 9 N 1.36937 * 120.00215 * 16.57409 * 7 2 1 10 10 C 1.47599 * 118.64237 * 27.06101 * 9 7 2 11 11 C 1.53950 * 112.14311 * 137.86591 * 10 9 7 12 12 C 1.50883 * 110.09583 * 319.43837 * 11 10 9 13 13 C 1.52564 * 109.35882 * 91.88424 * 12 11 10 14 14 C 1.47092 * 114.32956 * 274.98697 * 13 12 11 15 15 H 1.09005 * 109.32735 * 302.53695 * 14 13 12 16 16 N 1.46504 * 109.33167 * 182.88679 * 14 13 12 17 17 C 1.34766 * 119.99965 * 154.65034 * 16 14 13 18 18 O 1.21482 * 120.00566 * 0.02562 * 17 16 14 19 19 C 1.48359 * 119.99896 * 180.02562 * 17 16 14 20 20 C 1.40164 * 119.20454 * 179.73278 * 19 17 16 21 21 C 1.36622 * 119.70611 * 179.71792 * 20 19 17 22 22 C 1.40590 * 118.20676 * 0.53904 * 21 20 19 23 23 C 1.40736 * 121.36879 * 179.69722 * 22 21 20 24 24 C 1.36585 * 118.13376 * 180.02562 * 23 22 21 25 25 C 1.39430 * 119.84528 * 0.02562 * 24 23 22 26 26 N 1.31026 * 121.84170 * 0.02562 * 25 24 23 27 27 C 1.33861 * 121.42446 * 359.97438 * 26 25 24 28 28 N 1.31892 * 119.20089 * 359.97438 * 19 17 16 29 29 C 1.44577 * 118.64295 * 207.05819 * 9 7 2 30 30 H 0.97003 * 119.99770 * 359.97438 * 1 2 3 31 31 H 1.08997 * 108.95125 * 17.18337 * 10 9 7 32 32 H 1.09002 * 108.94945 * 258.55095 * 10 9 7 33 33 H 1.08992 * 109.37132 * 199.23967 * 11 10 9 34 34 H 1.09005 * 109.25978 * 79.55697 * 11 10 9 35 35 H 1.09004 * 109.48770 * 331.92356 * 12 11 10 36 36 H 1.08997 * 109.48964 * 211.85410 * 12 11 10 37 37 H 1.08997 * 108.51083 * 153.73022 * 13 12 11 38 38 H 1.09009 * 108.38766 * 36.14971 * 13 12 11 39 39 H 0.97005 * 119.99345 * 334.65216 * 16 14 13 40 40 H 1.08005 * 120.14526 * 359.97438 * 20 19 17 41 41 H 1.07996 * 120.89624 * 180.23617 * 21 20 19 42 42 H 1.08005 * 120.93167 * 0.02562 * 23 22 21 43 43 H 1.08001 * 120.07845 * 180.02562 * 24 23 22 44 44 H 1.07996 * 119.08552 * 179.97438 * 25 24 23 45 45 H 1.09002 * 109.44709 * 150.68756 * 29 9 7 46 46 H 1.08999 * 109.45188 * 30.77102 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3975 2.1043 -1.3953 5 1 1.5014 2.6217 0.7978 6 1 3.5943 1.4132 0.5974 7 6 2.0102 -1.2021 -0.0005 8 1 3.0566 -1.2217 0.2663 9 7 1.3682 -2.3633 -0.3393 10 6 0.2039 -2.2901 -1.2434 11 6 0.2164 -3.4119 -2.2977 12 6 1.6188 -3.6242 -2.8122 13 6 2.3062 -4.7004 -1.9775 14 6 2.9323 -4.2022 -0.7432 15 1 3.6585 -3.4288 -0.9938 16 7 3.6152 -5.3072 -0.0657 17 6 4.6507 -5.0549 0.7591 18 8 5.0176 -3.9112 0.9413 19 6 5.3425 -6.1739 1.4448 20 6 6.4211 -5.8930 2.2947 21 6 7.0620 -6.9152 2.9359 22 6 6.6149 -8.2281 2.7055 23 6 7.2306 -9.3310 3.3261 24 6 6.7429 -10.5777 3.0548 25 6 5.6647 -10.7265 2.1834 26 7 5.0948 -9.6971 1.6067 27 6 5.5222 -8.4481 1.8281 28 7 4.9308 -7.4094 1.2362 29 6 1.8590 -3.6103 0.2033 30 1 -0.4850 0.8401 0.0004 31 1 0.2109 -1.3262 -1.7523 32 1 -0.7086 -2.3698 -0.6526 33 1 -0.4350 -3.1360 -3.1269 34 1 -0.1460 -4.3349 -1.8449 35 1 2.1789 -2.6921 -2.7364 36 1 1.5797 -3.9417 -3.8542 37 1 3.0745 -5.1741 -2.5885 38 1 1.5651 -5.4537 -1.7100 39 1 3.3219 -6.2204 -0.2109 40 1 6.7415 -4.8726 2.4453 41 1 7.8927 -6.7203 3.5978 42 1 8.0652 -9.1955 3.9981 43 1 7.1914 -11.4461 3.5142 44 1 5.2892 -11.7178 1.9772 45 1 1.0324 -4.3142 0.3000 46 1 2.2991 -3.4310 1.1842 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034216184.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:29 Heat of formation + Delta-G solvation = 40.159277 kcal Electronic energy + Delta-G solvation = -29078.040021 eV Core-core repulsion = 25160.587776 eV Total energy + Delta-G solvation = -3917.452245 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.34970 -41.07166 -39.46589 -38.43454 -36.32130 -35.24787 -34.80238 -32.93514 -32.43535 -32.06124 -31.24724 -27.98649 -26.94248 -25.82117 -25.31179 -24.71187 -23.63892 -22.18634 -21.65932 -20.91012 -19.88638 -19.18987 -18.60588 -18.21137 -17.46232 -17.24102 -16.71153 -16.54768 -16.28048 -15.86406 -15.68236 -15.51928 -15.28843 -15.11654 -14.79751 -14.59028 -14.24438 -14.09688 -13.98205 -13.84867 -13.29192 -13.11005 -13.03126 -12.87199 -12.82571 -12.48006 -12.39050 -12.15329 -12.04505 -11.89320 -11.68116 -11.49753 -11.41075 -11.19978 -11.16639 -10.55294 -10.24682 -10.12777 -10.04817 -9.90263 -8.65798 -7.88225 -5.34727 -1.01421 -0.55662 0.82644 1.28428 1.42842 1.43307 1.54391 1.90279 2.13267 2.48681 2.55468 3.04765 3.24153 3.36298 3.44246 3.61794 3.69455 3.77082 3.87194 3.93904 4.05044 4.07104 4.22143 4.25948 4.38773 4.46769 4.47728 4.65644 4.67520 4.71421 4.81223 4.94808 4.97076 5.01416 5.07294 5.13750 5.18520 5.20144 5.22321 5.32874 5.36872 5.57535 5.61572 5.62179 5.69224 5.80440 6.11784 6.39610 6.48396 7.00444 7.11992 7.17269 7.91730 8.28749 9.16546 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017483 B = 0.002683 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.147388 B =10431.801153 C =11563.391203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.043 4.043 3 Si 0.960 3.040 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.263 4.263 8 H 0.051 0.949 9 N -0.596 5.596 10 C 0.185 3.815 11 C -0.131 4.131 12 C -0.095 4.095 13 C -0.110 4.110 14 C 0.133 3.867 15 H 0.055 0.945 16 N -0.689 5.689 17 C 0.557 3.443 18 O -0.559 6.559 19 C 0.131 3.869 20 C -0.149 4.149 21 C -0.023 4.023 22 C -0.154 4.154 23 C -0.041 4.041 24 C -0.161 4.161 25 C 0.160 3.840 26 N -0.508 5.508 27 C 0.270 3.730 28 N -0.463 5.463 29 C 0.161 3.839 30 H 0.250 0.750 31 H 0.041 0.959 32 H -0.005 1.005 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.043 0.957 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.415 0.585 40 H 0.155 0.845 41 H 0.196 0.804 42 H 0.187 0.813 43 H 0.190 0.810 44 H 0.200 0.800 45 H 0.045 0.955 46 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.950 -25.739 4.780 30.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.239 4.239 3 Si 0.789 3.211 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.394 4.394 8 H 0.069 0.931 9 N -0.317 5.317 10 C 0.060 3.940 11 C -0.170 4.170 12 C -0.133 4.133 13 C -0.148 4.148 14 C 0.026 3.974 15 H 0.073 0.927 16 N -0.340 5.340 17 C 0.342 3.658 18 O -0.437 6.437 19 C -0.024 4.024 20 C -0.170 4.170 21 C -0.050 4.050 22 C -0.159 4.159 23 C -0.067 4.067 24 C -0.180 4.180 25 C -0.016 4.016 26 N -0.219 5.219 27 C 0.031 3.969 28 N -0.177 5.177 29 C 0.032 3.968 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.014 0.986 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.253 0.747 40 H 0.173 0.827 41 H 0.213 0.787 42 H 0.204 0.796 43 H 0.207 0.793 44 H 0.217 0.783 45 H 0.063 0.937 46 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 14.591 -25.016 3.720 29.198 hybrid contribution 1.051 1.400 1.042 2.037 sum 15.642 -23.617 4.762 28.724 Atomic orbital electron populations 1.70228 1.06288 1.25739 1.55448 1.25691 0.96046 1.01115 1.01023 0.85356 0.78067 0.80052 0.77657 1.20740 1.21628 1.20235 1.19379 0.92382 0.86480 1.41117 0.93133 1.43725 1.34082 1.01685 1.52246 1.20861 0.86993 0.96533 0.89582 1.21948 0.97442 0.99039 0.98577 1.20795 0.95580 0.98197 0.98778 1.20537 1.00506 0.99037 0.94734 1.20868 0.94708 0.87800 0.94054 0.92658 1.45932 1.31681 1.11455 1.44939 1.18334 0.80544 0.87406 0.79527 1.90819 1.66544 1.22499 1.63826 1.21238 0.94991 0.89967 0.96228 1.21957 0.95344 1.03018 0.96702 1.21941 0.98175 0.89238 0.95599 1.20047 0.98350 0.97387 1.00137 1.22023 0.98354 0.90509 0.95828 1.22562 0.97048 0.99883 0.98533 1.23918 0.90773 0.97843 0.89069 1.67631 1.30877 0.98034 1.25318 1.19517 0.92118 0.91114 0.94110 1.67196 1.29228 0.98345 1.22908 1.20945 0.94303 0.87784 0.93769 0.94047 0.94081 0.98650 0.90750 0.91891 0.93799 0.89692 0.90883 0.90618 0.74729 0.82683 0.78664 0.79589 0.79259 0.78320 0.93674 0.96544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.15 11.11 21.65 0.24 -56.91 16 2 C -0.04 -2.56 4.84 84.86 0.41 -2.15 16 3 Si 0.96 48.05 29.58 68.60 2.03 50.08 16 4 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 5 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16 6 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 7 C -0.26 -15.69 9.43 84.03 0.79 -14.90 16 8 H 0.05 3.15 7.88 -2.91 -0.02 3.13 16 9 N -0.60 -31.73 2.27 -698.37 -1.58 -33.32 16 10 C 0.18 9.22 4.67 86.49 0.40 9.63 16 11 C -0.13 -4.83 5.71 30.23 0.17 -4.65 16 12 C -0.10 -3.24 5.51 29.76 0.16 -3.08 16 13 C -0.11 -3.52 4.55 28.61 0.13 -3.39 16 14 C 0.13 5.21 2.34 43.79 0.10 5.31 16 15 H 0.06 2.58 7.57 -2.38 -0.02 2.56 16 16 N -0.69 -24.03 5.04 -450.68 -2.27 -26.30 16 17 C 0.56 20.79 7.75 86.94 0.67 21.47 16 18 O -0.56 -25.11 15.94 -3.66 -0.06 -25.17 16 19 C 0.13 4.03 6.75 42.30 0.29 4.32 16 20 C -0.15 -3.58 9.54 22.36 0.21 -3.37 16 21 C -0.02 -0.36 9.89 22.47 0.22 -0.14 16 22 C -0.15 -2.69 5.75 -21.20 -0.12 -2.81 16 23 C -0.04 -0.32 9.90 22.49 0.22 -0.10 16 24 C -0.16 -0.91 10.04 22.17 0.22 -0.69 16 25 C 0.16 1.88 11.14 85.10 0.95 2.83 16 26 N -0.51 -11.71 10.43 -193.75 -2.02 -13.73 16 27 C 0.27 6.90 7.62 135.12 1.03 7.93 16 28 N -0.46 -14.05 9.56 -182.97 -1.75 -15.80 16 29 C 0.16 7.49 5.23 87.38 0.46 7.95 16 30 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 31 H 0.04 2.28 6.40 -2.39 -0.02 2.27 16 32 H 0.00 -0.25 8.03 -2.39 -0.02 -0.27 16 33 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.06 2.12 7.31 -2.38 -0.02 2.10 16 35 H 0.04 1.81 7.48 -2.38 -0.02 1.79 16 36 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.07 2.03 8.14 -2.39 -0.02 2.02 16 38 H 0.08 2.16 7.35 -2.38 -0.02 2.14 16 39 H 0.42 12.68 7.88 -92.70 -0.73 11.95 16 40 H 0.16 3.67 7.60 -2.91 -0.02 3.65 16 41 H 0.20 1.10 8.06 -2.91 -0.02 1.08 16 42 H 0.19 -0.12 8.06 -2.91 -0.02 -0.14 16 43 H 0.19 -0.61 8.06 -2.91 -0.02 -0.63 16 44 H 0.20 0.80 8.06 -2.91 -0.02 0.77 16 45 H 0.04 1.96 8.06 -2.39 -0.02 1.94 16 46 H 0.02 0.85 7.96 -2.39 -0.02 0.83 16 Total: -1.00 -83.80 374.40 1.19 -82.61 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.28 Total: 14.39 kcal Atomic # 6 Polarization: 17.82 SS G_CDS: 6.33 Total: 24.15 kcal Atomic # 7 Polarization: -138.66 SS G_CDS: -7.38 Total: -146.04 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.06 Total: -25.17 kcal Atomic # 14 Polarization: 48.05 SS G_CDS: 2.03 Total: 50.08 kcal Total: -83.80 1.19 -82.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034216184.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.765 kcal (2) G-P(sol) polarization free energy of solvation -83.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds