Wall clock time and date at job start Tue Mar 31 2020 23:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 119.99749 * 2 1 4 4 H 1.48498 * 109.47188 * 86.02009 * 3 2 1 5 5 H 1.48503 * 109.47057 * 326.01950 * 3 2 1 6 6 H 1.48494 * 109.47116 * 206.02318 * 3 2 1 7 7 C 1.38807 * 120.00085 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99848 * 160.30419 * 7 2 1 9 9 N 1.36933 * 120.00199 * 340.30112 * 7 2 1 10 10 C 1.50170 * 120.53876 * 336.68084 * 9 7 2 11 11 C 1.46243 * 107.53210 * 109.56279 * 10 9 7 12 12 C 1.52529 * 114.27473 * 58.41347 * 11 10 9 13 13 C 1.50124 * 105.41472 * 270.59034 * 12 11 10 14 14 C 1.54842 * 110.81724 * 97.68105 * 13 12 11 15 15 H 1.09001 * 109.35779 * 81.33949 * 14 13 12 16 16 N 1.46499 * 109.36171 * 200.92752 * 14 13 12 17 17 C 1.34778 * 120.00326 * 205.00148 * 16 14 13 18 18 O 1.21499 * 119.99511 * 359.97438 * 17 16 14 19 19 C 1.48350 * 120.00367 * 180.02562 * 17 16 14 20 20 C 1.40162 * 119.20119 * 179.72864 * 19 17 16 21 21 C 1.36625 * 119.70522 * 179.71594 * 20 19 17 22 22 C 1.40599 * 118.20301 * 0.54473 * 21 20 19 23 23 C 1.40739 * 121.36573 * 179.69937 * 22 21 20 24 24 C 1.36589 * 118.12990 * 180.02562 * 23 22 21 25 25 C 1.39427 * 119.84338 * 0.02562 * 24 23 22 26 26 N 1.31013 * 121.84673 * 359.97438 * 25 24 23 27 27 C 1.33865 * 121.42494 * 359.97438 * 26 25 24 28 28 N 1.31889 * 119.19969 * 359.97438 * 19 17 16 29 29 C 1.43436 * 120.53637 * 156.40255 * 9 7 2 30 30 H 0.96996 * 120.00447 * 359.97438 * 1 2 3 31 31 H 1.08990 * 109.84965 * 229.07408 * 10 9 7 32 32 H 1.08997 * 109.84542 * 349.99380 * 10 9 7 33 33 H 1.08995 * 108.51937 * 179.65089 * 11 10 9 34 34 H 1.08997 * 108.52311 * 297.32634 * 11 10 9 35 35 H 1.08998 * 110.25104 * 29.56458 * 12 11 10 36 36 H 1.09001 * 110.24854 * 151.47620 * 12 11 10 37 37 H 1.09000 * 109.21455 * 218.02927 * 13 12 11 38 38 H 1.09003 * 109.20687 * 337.34492 * 13 12 11 39 39 H 0.96996 * 119.99921 * 25.00598 * 16 14 13 40 40 H 1.08001 * 120.14933 * 0.02562 * 20 19 17 41 41 H 1.07993 * 120.90248 * 180.26775 * 21 20 19 42 42 H 1.08001 * 120.93574 * 0.02562 * 23 22 21 43 43 H 1.08000 * 120.07403 * 180.02562 * 24 23 22 44 44 H 1.08000 * 119.07483 * 179.97438 * 25 24 23 45 45 H 1.08991 * 108.16323 * 33.30724 * 29 9 7 46 46 H 1.09001 * 108.15805 * 149.87591 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4135 2.0950 1.3967 5 1 1.4922 2.6269 -0.7825 6 1 3.5872 1.4174 -0.6142 7 6 2.0103 -1.2021 0.0005 8 1 3.0429 -1.2296 -0.3147 9 7 1.3858 -2.3531 0.4008 10 6 0.1887 -2.2967 1.3057 11 6 -0.9796 -2.6824 0.5152 12 6 -0.8834 -4.0704 -0.1099 13 6 -0.2355 -3.8613 -1.4479 14 6 1.2832 -4.1542 -1.3757 15 1 1.4476 -5.2295 -1.4458 16 7 1.9599 -3.4886 -2.4916 17 6 3.1349 -3.9653 -2.9482 18 8 3.6333 -4.9468 -2.4340 19 6 3.8204 -3.2909 -4.0779 20 6 5.0445 -3.7975 -4.5355 21 6 5.6819 -3.1879 -5.5790 22 6 5.0815 -2.0536 -6.1531 23 6 5.6830 -1.3704 -7.2265 24 6 5.0423 -0.2758 -7.7332 25 6 3.8276 0.1331 -7.1843 26 7 3.2708 -0.5055 -6.1850 27 6 3.8438 -1.5862 -5.6413 28 7 3.2656 -2.2263 -4.6240 29 6 1.8609 -3.6319 -0.0423 30 1 -0.4850 0.8400 0.0004 31 1 0.3194 -2.9907 2.1359 32 1 0.0606 -1.2837 1.6871 33 1 -1.8584 -2.6529 1.1593 34 1 -1.1129 -1.9535 -0.2841 35 1 -0.2672 -4.7215 0.5101 36 1 -1.8782 -4.4986 -0.2328 37 1 -0.6951 -4.5284 -2.1772 38 1 -0.3869 -2.8286 -1.7622 39 1 1.5622 -2.7047 -2.9018 40 1 5.4796 -4.6688 -4.0687 41 1 6.6236 -3.5645 -5.9500 42 1 6.6248 -1.7024 -7.6379 43 1 5.4756 0.2717 -8.5572 44 1 3.3319 1.0006 -7.5943 45 1 2.9443 -3.5745 -0.1465 46 1 1.6380 -4.3645 0.7334 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034216186.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:34 Heat of formation + Delta-G solvation = 69.949978 kcal Electronic energy + Delta-G solvation = -29948.390078 eV Core-core repulsion = 26032.229654 eV Total energy + Delta-G solvation = -3916.160424 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.33363 -39.51481 -38.00430 -37.17972 -34.43404 -34.05159 -33.05579 -31.43885 -31.07106 -30.84311 -29.68941 -26.29849 -25.64267 -24.48476 -23.79914 -22.90700 -22.72165 -20.90658 -19.75104 -19.13431 -18.74919 -17.91623 -17.30588 -16.58387 -16.12661 -15.60800 -15.35634 -14.97022 -14.85708 -14.61676 -14.35543 -14.19528 -13.90306 -13.68654 -13.35689 -13.28008 -13.18472 -12.33438 -12.21952 -12.13950 -12.02654 -11.72993 -11.49843 -11.26337 -11.22397 -10.80918 -10.72724 -10.66900 -10.41864 -10.06530 -9.91615 -9.76027 -9.63717 -9.37288 -9.19419 -9.09804 -9.07463 -9.04863 -8.56498 -8.26317 -6.63975 -5.74514 -3.12002 -0.04796 0.37049 1.73068 2.35219 3.32037 3.39788 3.42886 3.50034 3.51603 3.72161 4.10323 4.21068 4.42679 4.48294 4.56277 4.57618 4.78193 4.93894 5.13114 5.18396 5.37064 5.44361 5.48223 5.53857 5.65668 5.67556 5.71377 5.92823 6.00972 6.02613 6.16426 6.24691 6.30212 6.42687 6.49330 6.57059 6.66835 6.90501 6.95472 7.01602 7.08204 7.17557 7.27796 7.31913 7.66371 7.81050 7.94931 8.05032 8.14957 8.47780 8.64850 9.24771 9.91603 10.44165 11.32308 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011050 B = 0.004087 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.328268 B = 6850.116112 C = 8339.667576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.006 3.994 3 Si 0.896 3.104 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.239 4.239 8 H 0.063 0.937 9 N -0.581 5.581 10 C 0.165 3.835 11 C -0.131 4.131 12 C -0.111 4.111 13 C -0.111 4.111 14 C 0.113 3.887 15 H 0.074 0.926 16 N -0.670 5.670 17 C 0.560 3.440 18 O -0.546 6.546 19 C 0.154 3.846 20 C -0.128 4.128 21 C -0.053 4.053 22 C -0.146 4.146 23 C -0.048 4.048 24 C -0.177 4.177 25 C 0.155 3.845 26 N -0.453 5.453 27 C 0.304 3.696 28 N -0.428 5.428 29 C 0.151 3.849 30 H 0.252 0.748 31 H 0.005 0.995 32 H 0.089 0.911 33 H 0.025 0.975 34 H 0.101 0.899 35 H 0.057 0.943 36 H 0.049 0.951 37 H 0.039 0.961 38 H 0.082 0.918 39 H 0.414 0.586 40 H 0.156 0.844 41 H 0.148 0.852 42 H 0.142 0.858 43 H 0.143 0.857 44 H 0.167 0.833 45 H 0.037 0.963 46 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.974 -4.966 -14.239 17.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.192 4.192 3 Si 0.727 3.273 4 H -0.217 1.217 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.081 0.919 9 N -0.302 5.302 10 C 0.041 3.959 11 C -0.170 4.170 12 C -0.149 4.149 13 C -0.149 4.149 14 C 0.006 3.994 15 H 0.093 0.907 16 N -0.319 5.319 17 C 0.343 3.657 18 O -0.424 6.424 19 C -0.003 4.003 20 C -0.149 4.149 21 C -0.079 4.079 22 C -0.152 4.152 23 C -0.074 4.074 24 C -0.197 4.197 25 C -0.022 4.022 26 N -0.162 5.162 27 C 0.065 3.935 28 N -0.140 5.140 29 C 0.021 3.979 30 H 0.062 0.938 31 H 0.023 0.977 32 H 0.107 0.893 33 H 0.043 0.957 34 H 0.119 0.881 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.100 0.900 39 H 0.251 0.749 40 H 0.174 0.826 41 H 0.165 0.835 42 H 0.160 0.840 43 H 0.161 0.839 44 H 0.184 0.816 45 H 0.055 0.945 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 6.542 -4.912 -13.097 15.441 hybrid contribution 1.814 0.879 -1.093 2.293 sum 8.356 -4.032 -14.190 16.953 Atomic orbital electron populations 1.69963 1.04929 1.25102 1.54277 1.24829 0.95174 0.97973 1.01263 0.86361 0.79311 0.84342 0.77316 1.21741 1.21893 1.20820 1.19128 0.93448 0.85200 1.39114 0.91909 1.44281 1.33751 1.00778 1.51385 1.20178 0.85357 1.00434 0.89902 1.21020 0.98054 0.95601 1.02315 1.20969 0.98595 0.98893 0.96476 1.21679 0.93165 1.02612 0.97433 1.22875 0.92213 0.95830 0.88523 0.90749 1.45970 1.20690 1.31486 1.33710 1.17751 0.81945 0.83800 0.82216 1.90738 1.65697 1.26703 1.59281 1.21689 0.92774 0.90984 0.94888 1.21867 0.94871 1.01547 0.96611 1.21415 0.99307 0.92905 0.94312 1.19734 0.97691 0.98544 0.99189 1.21462 0.99044 0.93832 0.93107 1.22034 0.97233 0.98276 1.02137 1.23147 0.91855 0.97243 0.89999 1.67674 1.33412 1.05766 1.09321 1.19252 0.88852 0.92702 0.92676 1.67474 1.33342 1.05931 1.07245 1.20714 0.96980 0.88590 0.91665 0.93819 0.97657 0.89294 0.95667 0.88058 0.92423 0.93215 0.94179 0.89979 0.74896 0.82645 0.83471 0.83990 0.83947 0.81554 0.94456 0.94313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.53 9.43 55.49 0.52 -24.00 16 2 C 0.01 0.15 4.91 -17.43 -0.09 0.07 16 3 Si 0.90 22.21 29.60 -169.99 -5.03 17.18 16 4 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.28 -7.10 7.11 56.52 0.40 -6.69 16 7 C -0.24 -6.44 9.62 -15.06 -0.14 -6.58 16 8 H 0.06 1.77 7.89 -52.49 -0.41 1.35 16 9 N -0.58 -14.11 2.61 -175.41 -0.46 -14.56 16 10 C 0.16 3.80 5.25 -5.20 -0.03 3.78 16 11 C -0.13 -2.76 5.02 -30.18 -0.15 -2.92 16 12 C -0.11 -2.01 5.76 -28.40 -0.16 -2.18 16 13 C -0.11 -2.07 5.23 -27.19 -0.14 -2.22 16 14 C 0.11 2.20 2.91 -66.22 -0.19 2.01 16 15 H 0.07 1.40 7.57 -51.93 -0.39 1.01 16 16 N -0.67 -13.25 5.07 -52.93 -0.27 -13.52 16 17 C 0.56 10.73 7.63 -12.10 -0.09 10.64 16 18 O -0.55 -11.13 15.94 5.37 0.09 -11.04 16 19 C 0.15 2.65 6.75 -82.96 -0.56 2.09 16 20 C -0.13 -1.72 9.54 -39.44 -0.38 -2.10 16 21 C -0.05 -0.57 9.89 -39.27 -0.39 -0.96 16 22 C -0.15 -1.82 5.75 -106.68 -0.61 -2.43 16 23 C -0.05 -0.42 9.90 -39.23 -0.39 -0.80 16 24 C -0.18 -1.42 10.04 -39.73 -0.40 -1.81 16 25 C 0.16 1.66 11.14 -17.46 -0.19 1.47 16 26 N -0.45 -7.19 10.43 -12.60 -0.13 -7.32 16 27 C 0.30 4.98 7.62 -157.91 -1.20 3.78 16 28 N -0.43 -7.87 9.56 -9.19 -0.09 -7.96 16 29 C 0.15 3.27 4.75 -4.92 -0.02 3.25 16 30 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 31 H 0.01 0.12 8.13 -51.93 -0.42 -0.31 16 32 H 0.09 2.30 6.06 -51.93 -0.31 1.98 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.10 2.45 5.28 -51.93 -0.27 2.18 16 35 H 0.06 1.02 6.28 -51.93 -0.33 0.69 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 1.78 6.58 -51.93 -0.34 1.44 16 39 H 0.41 8.62 7.74 -40.82 -0.32 8.30 16 40 H 0.16 1.86 7.60 -52.49 -0.40 1.47 16 41 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 42 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 43 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 44 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 45 H 0.04 0.87 7.80 -51.93 -0.41 0.47 16 46 H 0.04 0.79 6.89 -51.93 -0.36 0.43 16 LS Contribution 368.45 15.07 5.55 5.55 Total: -1.00 -32.02 368.45 -11.02 -43.04 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -6.06 Total: 7.57 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: -5.15 Total: 5.08 kcal Atomic # 7 Polarization: -66.94 SS G_CDS: -0.42 Total: -67.37 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.09 Total: -11.04 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.03 Total: 17.18 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.02 -11.02 -43.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034216186.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.988 kcal (2) G-P(sol) polarization free energy of solvation -32.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds