Wall clock time and date at job start Tue Mar 31 2020 23:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 119.99749 * 2 1 4 4 H 1.48498 * 109.47188 * 86.02009 * 3 2 1 5 5 H 1.48503 * 109.47057 * 326.01950 * 3 2 1 6 6 H 1.48494 * 109.47116 * 206.02318 * 3 2 1 7 7 C 1.38807 * 120.00085 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99848 * 160.30419 * 7 2 1 9 9 N 1.36933 * 120.00199 * 340.30112 * 7 2 1 10 10 C 1.50170 * 120.53876 * 336.68084 * 9 7 2 11 11 C 1.46243 * 107.53210 * 109.56279 * 10 9 7 12 12 C 1.52529 * 114.27473 * 58.41347 * 11 10 9 13 13 C 1.50124 * 105.41472 * 270.59034 * 12 11 10 14 14 C 1.54842 * 110.81724 * 97.68105 * 13 12 11 15 15 H 1.09001 * 109.35779 * 81.33949 * 14 13 12 16 16 N 1.46499 * 109.36171 * 200.92752 * 14 13 12 17 17 C 1.34778 * 120.00326 * 205.00148 * 16 14 13 18 18 O 1.21499 * 119.99511 * 359.97438 * 17 16 14 19 19 C 1.48350 * 120.00367 * 180.02562 * 17 16 14 20 20 C 1.40162 * 119.20119 * 179.72864 * 19 17 16 21 21 C 1.36625 * 119.70522 * 179.71594 * 20 19 17 22 22 C 1.40599 * 118.20301 * 0.54473 * 21 20 19 23 23 C 1.40739 * 121.36573 * 179.69937 * 22 21 20 24 24 C 1.36589 * 118.12990 * 180.02562 * 23 22 21 25 25 C 1.39427 * 119.84338 * 0.02562 * 24 23 22 26 26 N 1.31013 * 121.84673 * 359.97438 * 25 24 23 27 27 C 1.33865 * 121.42494 * 359.97438 * 26 25 24 28 28 N 1.31889 * 119.19969 * 359.97438 * 19 17 16 29 29 C 1.43436 * 120.53637 * 156.40255 * 9 7 2 30 30 H 0.96996 * 120.00447 * 359.97438 * 1 2 3 31 31 H 1.08990 * 109.84965 * 229.07408 * 10 9 7 32 32 H 1.08997 * 109.84542 * 349.99380 * 10 9 7 33 33 H 1.08995 * 108.51937 * 179.65089 * 11 10 9 34 34 H 1.08997 * 108.52311 * 297.32634 * 11 10 9 35 35 H 1.08998 * 110.25104 * 29.56458 * 12 11 10 36 36 H 1.09001 * 110.24854 * 151.47620 * 12 11 10 37 37 H 1.09000 * 109.21455 * 218.02927 * 13 12 11 38 38 H 1.09003 * 109.20687 * 337.34492 * 13 12 11 39 39 H 0.96996 * 119.99921 * 25.00598 * 16 14 13 40 40 H 1.08001 * 120.14933 * 0.02562 * 20 19 17 41 41 H 1.07993 * 120.90248 * 180.26775 * 21 20 19 42 42 H 1.08001 * 120.93574 * 0.02562 * 23 22 21 43 43 H 1.08000 * 120.07403 * 180.02562 * 24 23 22 44 44 H 1.08000 * 119.07483 * 179.97438 * 25 24 23 45 45 H 1.08991 * 108.16323 * 33.30724 * 29 9 7 46 46 H 1.09001 * 108.15805 * 149.87591 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4135 2.0950 1.3967 5 1 1.4922 2.6269 -0.7825 6 1 3.5872 1.4174 -0.6142 7 6 2.0103 -1.2021 0.0005 8 1 3.0429 -1.2296 -0.3147 9 7 1.3858 -2.3531 0.4008 10 6 0.1887 -2.2967 1.3057 11 6 -0.9796 -2.6824 0.5152 12 6 -0.8834 -4.0704 -0.1099 13 6 -0.2355 -3.8613 -1.4479 14 6 1.2832 -4.1542 -1.3757 15 1 1.4476 -5.2295 -1.4458 16 7 1.9599 -3.4886 -2.4916 17 6 3.1349 -3.9653 -2.9482 18 8 3.6333 -4.9468 -2.4340 19 6 3.8204 -3.2909 -4.0779 20 6 5.0445 -3.7975 -4.5355 21 6 5.6819 -3.1879 -5.5790 22 6 5.0815 -2.0536 -6.1531 23 6 5.6830 -1.3704 -7.2265 24 6 5.0423 -0.2758 -7.7332 25 6 3.8276 0.1331 -7.1843 26 7 3.2708 -0.5055 -6.1850 27 6 3.8438 -1.5862 -5.6413 28 7 3.2656 -2.2263 -4.6240 29 6 1.8609 -3.6319 -0.0423 30 1 -0.4850 0.8400 0.0004 31 1 0.3194 -2.9907 2.1359 32 1 0.0606 -1.2837 1.6871 33 1 -1.8584 -2.6529 1.1593 34 1 -1.1129 -1.9535 -0.2841 35 1 -0.2672 -4.7215 0.5101 36 1 -1.8782 -4.4986 -0.2328 37 1 -0.6951 -4.5284 -2.1772 38 1 -0.3869 -2.8286 -1.7622 39 1 1.5622 -2.7047 -2.9018 40 1 5.4796 -4.6688 -4.0687 41 1 6.6236 -3.5645 -5.9500 42 1 6.6248 -1.7024 -7.6379 43 1 5.4756 0.2717 -8.5572 44 1 3.3319 1.0006 -7.5943 45 1 2.9443 -3.5745 -0.1465 46 1 1.6380 -4.3645 0.7334 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034216186.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:33 Heat of formation + Delta-G solvation = 49.228834 kcal Electronic energy + Delta-G solvation = -29949.288614 eV Core-core repulsion = 26032.229654 eV Total energy + Delta-G solvation = -3917.058960 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.32032 -40.93555 -39.47619 -38.42990 -35.95613 -35.20307 -34.74825 -32.93479 -32.36036 -32.05134 -31.20943 -28.05520 -26.95301 -25.65240 -25.15922 -24.68181 -23.64640 -22.32847 -21.33606 -20.79060 -19.82685 -19.14439 -18.58006 -18.17776 -17.24240 -17.10990 -16.89401 -16.49028 -16.14646 -15.87227 -15.76997 -15.41921 -15.28812 -15.10911 -14.95818 -14.44079 -14.06227 -13.99383 -13.81915 -13.44417 -13.32843 -13.26428 -13.14278 -12.86479 -12.70262 -12.42725 -12.36569 -12.15211 -11.96146 -11.84024 -11.81393 -11.31002 -11.17555 -11.07622 -10.94007 -10.48576 -10.13857 -10.08055 -9.99257 -9.88359 -8.61043 -7.83518 -5.22051 -0.97524 -0.54683 0.84395 1.30995 1.39435 1.41978 1.48197 2.05499 2.20086 2.50616 2.60944 3.06589 3.28912 3.37569 3.50090 3.59922 3.62869 3.78750 3.92161 3.94595 4.07358 4.15096 4.25618 4.41518 4.45787 4.52483 4.56695 4.66134 4.66798 4.82006 4.83597 4.91105 4.93681 5.04137 5.10814 5.20103 5.22791 5.30545 5.32185 5.43936 5.58160 5.59937 5.65425 5.69347 5.80955 6.18512 6.23974 6.41099 6.55679 7.02714 7.16188 7.19339 7.90922 8.39703 9.19852 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011050 B = 0.004087 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.328268 B = 6850.116112 C = 8339.667576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.031 4.031 3 Si 0.944 3.056 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.290 1.290 7 C -0.242 4.242 8 H 0.041 0.959 9 N -0.592 5.592 10 C 0.167 3.833 11 C -0.124 4.124 12 C -0.102 4.102 13 C -0.101 4.101 14 C 0.119 3.881 15 H 0.086 0.914 16 N -0.679 5.679 17 C 0.558 3.442 18 O -0.564 6.564 19 C 0.125 3.875 20 C -0.144 4.144 21 C -0.024 4.024 22 C -0.155 4.155 23 C -0.038 4.038 24 C -0.162 4.162 25 C 0.155 3.845 26 N -0.518 5.518 27 C 0.267 3.733 28 N -0.474 5.474 29 C 0.154 3.846 30 H 0.247 0.753 31 H 0.024 0.976 32 H 0.058 0.942 33 H 0.039 0.961 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.047 0.953 39 H 0.406 0.594 40 H 0.166 0.834 41 H 0.203 0.797 42 H 0.193 0.807 43 H 0.192 0.808 44 H 0.194 0.806 45 H 0.011 0.989 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.056 -5.520 -16.803 20.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.228 4.228 3 Si 0.775 3.225 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.216 1.216 7 C -0.373 4.373 8 H 0.059 0.941 9 N -0.313 5.313 10 C 0.044 3.956 11 C -0.163 4.163 12 C -0.139 4.139 13 C -0.139 4.139 14 C 0.012 3.988 15 H 0.104 0.896 16 N -0.326 5.326 17 C 0.343 3.657 18 O -0.444 6.444 19 C -0.031 4.031 20 C -0.165 4.165 21 C -0.050 4.050 22 C -0.160 4.160 23 C -0.064 4.064 24 C -0.182 4.182 25 C -0.022 4.022 26 N -0.229 5.229 27 C 0.029 3.971 28 N -0.187 5.187 29 C 0.024 3.976 30 H 0.057 0.943 31 H 0.043 0.957 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.241 0.759 40 H 0.183 0.817 41 H 0.220 0.780 42 H 0.210 0.790 43 H 0.209 0.791 44 H 0.211 0.789 45 H 0.030 0.970 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.627 -5.490 -15.654 18.698 hybrid contribution 1.259 1.159 -0.477 1.776 sum 9.886 -4.331 -16.131 19.409 Atomic orbital electron populations 1.70094 1.05310 1.24951 1.54886 1.25288 0.95890 0.99789 1.01848 0.85623 0.77899 0.81876 0.77149 1.21188 1.22177 1.21613 1.19015 0.92650 0.86600 1.38994 0.94115 1.44333 1.34179 1.00831 1.51992 1.20136 0.85766 0.99194 0.90496 1.20838 0.97560 0.96668 1.01194 1.20935 1.00355 0.97123 0.95519 1.21571 0.92695 1.00996 0.98652 1.22745 0.92695 0.96138 0.87267 0.89600 1.46020 1.21290 1.31366 1.33917 1.18198 0.81454 0.83509 0.82571 1.90690 1.66028 1.27487 1.60200 1.21471 0.94487 0.91874 0.95220 1.21991 0.93974 1.02446 0.98100 1.21986 1.00042 0.91039 0.91956 1.20070 0.96433 0.99278 1.00258 1.22052 1.00292 0.92978 0.91087 1.22547 0.95497 0.97827 1.02292 1.23871 0.92941 0.97049 0.88300 1.67606 1.35913 1.07236 1.12104 1.19556 0.90895 0.93522 0.93138 1.67248 1.35342 1.07030 1.09128 1.20702 0.95446 0.87982 0.93439 0.94337 0.95745 0.92402 0.94281 0.91420 0.91412 0.90289 0.91789 0.93416 0.75863 0.81682 0.78037 0.78975 0.79053 0.78905 0.97038 0.92551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.52 9.43 21.65 0.20 -51.32 16 2 C -0.03 -1.78 4.91 84.86 0.42 -1.36 16 3 Si 0.94 47.38 29.60 68.60 2.03 49.41 16 4 H -0.28 -13.97 7.11 99.48 0.71 -13.26 16 5 H -0.29 -14.84 7.11 99.48 0.71 -14.13 16 6 H -0.29 -14.77 7.11 99.48 0.71 -14.07 16 7 C -0.24 -13.66 9.62 84.03 0.81 -12.85 16 8 H 0.04 2.45 7.89 -2.91 -0.02 2.43 16 9 N -0.59 -29.72 2.61 -708.86 -1.85 -31.58 16 10 C 0.17 7.84 5.25 83.58 0.44 8.28 16 11 C -0.12 -5.23 5.02 28.36 0.14 -5.09 16 12 C -0.10 -3.53 5.76 29.51 0.17 -3.36 16 13 C -0.10 -3.80 5.23 30.30 0.16 -3.64 16 14 C 0.12 4.74 2.91 46.10 0.13 4.87 16 15 H 0.09 3.24 7.57 -2.39 -0.02 3.22 16 16 N -0.68 -28.57 5.07 -439.67 -2.23 -30.80 16 17 C 0.56 22.70 7.63 86.94 0.66 23.36 16 18 O -0.56 -23.94 15.94 -3.71 -0.06 -24.00 16 19 C 0.13 4.54 6.75 42.30 0.29 4.83 16 20 C -0.14 -3.85 9.54 22.36 0.21 -3.64 16 21 C -0.02 -0.45 9.89 22.47 0.22 -0.23 16 22 C -0.16 -3.52 5.75 -21.20 -0.12 -3.64 16 23 C -0.04 -0.47 9.90 22.50 0.22 -0.25 16 24 C -0.16 -1.85 10.04 22.17 0.22 -1.63 16 25 C 0.15 3.03 11.14 85.10 0.95 3.98 16 26 N -0.52 -16.84 10.43 -193.76 -2.02 -18.86 16 27 C 0.27 8.98 7.62 135.12 1.03 10.01 16 28 N -0.47 -18.70 9.56 -182.98 -1.75 -20.45 16 29 C 0.15 6.85 4.75 87.42 0.41 7.26 16 30 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 31 H 0.02 1.04 8.13 -2.39 -0.02 1.03 16 32 H 0.06 3.08 6.06 -2.39 -0.01 3.06 16 33 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.07 3.38 5.28 -2.39 -0.01 3.36 16 35 H 0.07 2.25 6.28 -2.39 -0.02 2.23 16 36 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.05 2.15 6.58 -2.39 -0.02 2.14 16 39 H 0.41 18.42 7.74 -92.71 -0.72 17.70 16 40 H 0.17 3.91 7.60 -2.91 -0.02 3.89 16 41 H 0.20 1.47 8.06 -2.91 -0.02 1.44 16 42 H 0.19 0.48 8.06 -2.91 -0.02 0.46 16 43 H 0.19 0.33 8.06 -2.91 -0.02 0.31 16 44 H 0.19 2.39 8.06 -2.91 -0.02 2.36 16 45 H 0.01 0.56 7.80 -2.39 -0.02 0.54 16 46 H 0.06 2.28 6.89 -2.39 -0.02 2.26 16 Total: -1.00 -77.77 368.45 1.00 -76.77 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: 0.30 Total: 23.91 kcal Atomic # 6 Polarization: 20.54 SS G_CDS: 6.37 Total: 26.91 kcal Atomic # 7 Polarization: -145.35 SS G_CDS: -7.65 Total: -153.00 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.06 Total: -24.00 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.41 kcal Total: -77.77 1.00 -76.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034216186.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.998 kcal (2) G-P(sol) polarization free energy of solvation -77.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds