Wall clock time and date at job start Tue Mar 31 2020 23:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99827 * 2 1 4 4 H 1.48509 * 109.46621 * 269.99324 * 3 2 1 5 5 H 1.48495 * 109.47334 * 29.99059 * 3 2 1 6 6 H 1.48500 * 109.47248 * 149.99588 * 3 2 1 7 7 C 1.38809 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00052 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00230 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00239 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.46981 * 34.99973 * 10 9 7 12 12 C 1.52999 * 109.47136 * 154.99840 * 10 9 7 13 13 C 1.52992 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47689 * 299.99639 * 13 12 10 15 15 H 1.08999 * 109.47014 * 300.00743 * 14 13 12 16 16 N 1.46499 * 109.47493 * 180.02562 * 14 13 12 17 17 C 1.34777 * 119.99665 * 155.28120 * 16 14 13 18 18 O 1.21543 * 120.00296 * 359.72071 * 17 16 14 19 19 C 1.47869 * 119.99621 * 179.72373 * 17 16 14 20 20 C 1.40628 * 120.26124 * 359.97438 * 19 17 16 21 21 N 1.30861 * 121.65964 * 180.02562 * 20 19 17 22 22 C 1.33592 * 121.57883 * 359.97438 * 21 20 19 23 23 C 1.40641 * 121.62639 * 180.02562 * 22 21 20 24 24 N 1.31154 * 120.03801 * 179.97438 * 23 22 21 25 25 C 1.32488 * 122.89022 * 0.02562 * 24 23 22 26 26 C 1.36312 * 121.71280 * 359.97438 * 25 24 23 27 27 C 1.40598 * 118.65362 * 0.02562 * 26 25 24 28 28 C 1.38990 * 120.25671 * 179.72171 * 19 17 16 29 29 C 1.53008 * 109.46675 * 60.00323 * 14 13 12 30 30 C 1.53002 * 109.46916 * 274.99793 * 10 9 7 31 31 H 0.96996 * 120.00119 * 0.02562 * 1 2 3 32 32 H 0.96999 * 119.99708 * 359.97438 * 9 7 2 33 33 H 1.08999 * 109.46965 * 59.99649 * 12 10 9 34 34 H 1.09006 * 109.47222 * 299.99982 * 12 10 9 35 35 H 1.09009 * 109.47102 * 180.02562 * 13 12 10 36 36 H 1.08999 * 109.47499 * 60.00085 * 13 12 10 37 37 H 0.97001 * 119.99790 * 334.99833 * 16 14 13 38 38 H 1.08001 * 119.17447 * 359.97438 * 20 19 17 39 39 H 1.07998 * 119.98037 * 359.97438 * 23 22 21 40 40 H 1.08003 * 119.14177 * 180.02562 * 25 24 23 41 41 H 1.08003 * 120.67401 * 180.02562 * 26 25 24 42 42 H 1.08002 * 121.11528 * 359.97438 * 28 19 17 43 43 H 1.09000 * 109.47169 * 59.99905 * 29 14 13 44 44 H 1.08995 * 109.47066 * 180.02562 * 29 14 13 45 45 H 1.08999 * 109.47056 * 300.00271 * 30 10 9 46 46 H 1.09000 * 109.46999 * 59.99752 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4476 2.6527 0.6998 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 1 2.9688 -3.5505 0.5900 12 6 1.1810 -4.7521 0.6102 13 6 1.9458 -6.0772 0.6096 14 6 2.3091 -6.4558 -0.8276 15 1 1.3982 -6.5617 -1.4167 16 7 3.0409 -7.7250 -0.8282 17 6 3.0360 -8.5051 -1.9272 18 8 2.4203 -8.1581 -2.9161 19 6 3.7796 -9.7832 -1.9299 20 6 4.4942 -10.1897 -0.7890 21 7 5.1620 -11.3148 -0.7615 22 6 5.1972 -12.1333 -1.8166 23 6 5.9141 -13.3430 -1.7880 24 7 5.9271 -14.1235 -2.8419 25 6 5.2860 -13.8290 -3.9633 26 6 4.5622 -12.6814 -4.0946 27 6 4.5018 -11.7941 -3.0057 28 6 3.7735 -10.5946 -3.0583 29 6 3.1863 -5.3604 -1.4373 30 6 2.4220 -4.0356 -1.4365 31 1 -0.4850 0.8400 -0.0004 32 1 0.3557 -2.3881 0.0005 33 1 0.2703 -4.8583 0.0208 34 1 0.9218 -4.4823 1.6340 35 1 1.3207 -6.8577 1.0435 36 1 2.8567 -5.9713 1.1987 37 1 3.5323 -8.0018 -0.0390 38 1 4.4926 -9.5571 0.0864 39 1 6.4542 -13.6293 -0.8977 40 1 5.3375 -14.5165 -4.7947 41 1 4.0457 -12.4582 -5.0165 42 1 3.2300 -10.3103 -3.9472 43 1 4.0972 -5.2545 -0.8481 44 1 3.4448 -5.6299 -2.4613 45 1 1.5112 -4.1418 -2.0259 46 1 3.0468 -3.2552 -1.8708 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034689764.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:35 Heat of formation + Delta-G solvation = 30.459570 kcal Electronic energy + Delta-G solvation = -27874.582243 eV Core-core repulsion = 23956.709387 eV Total energy + Delta-G solvation = -3917.872856 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.79552 -40.22658 -38.54735 -37.83564 -35.06288 -34.23745 -33.30348 -32.12555 -30.94621 -30.58437 -30.45493 -27.64929 -25.71229 -25.06347 -23.62266 -23.11372 -22.47225 -21.69946 -20.87709 -19.73311 -18.99292 -18.44089 -17.95565 -17.09126 -16.73380 -16.19954 -15.61354 -15.57636 -15.22791 -14.90550 -14.77146 -14.55674 -14.04935 -13.86321 -13.72692 -13.67847 -13.58632 -13.23404 -13.00988 -12.97034 -12.59842 -12.09091 -11.86375 -11.50446 -11.38502 -11.10879 -10.84677 -10.82639 -10.75778 -10.57183 -10.32795 -10.19556 -10.15515 -9.90305 -9.88502 -9.79985 -9.61057 -9.13785 -9.02572 -8.86736 -6.95243 -5.76446 -3.05031 -0.48832 -0.08276 1.19393 2.05732 2.76551 2.87778 3.43200 3.47932 3.48403 3.49934 3.51401 3.80169 3.89706 4.06208 4.09310 4.15638 4.45678 4.58694 4.64348 4.79563 4.92128 4.97073 4.97880 5.14254 5.21360 5.31704 5.46685 5.49192 5.54586 5.62841 5.67647 5.72673 5.78458 5.82695 5.94664 5.97504 6.15171 6.19188 6.25053 6.41639 6.51731 6.58777 6.68685 6.95782 7.06110 7.12382 7.21094 7.36198 7.70117 7.88180 8.42399 9.53395 10.11829 10.46163 11.46246 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.033462 B = 0.001750 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.568135 B =15994.466472 C =16108.344568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.177 3.823 11 H 0.046 0.954 12 C -0.120 4.120 13 C -0.119 4.119 14 C 0.145 3.855 15 H 0.091 0.909 16 N -0.716 5.716 17 C 0.561 3.439 18 O -0.527 6.527 19 C -0.171 4.171 20 C 0.160 3.840 21 N -0.456 5.456 22 C 0.081 3.919 23 C 0.163 3.837 24 N -0.468 5.468 25 C 0.073 3.927 26 C -0.132 4.132 27 C -0.086 4.086 28 C 0.008 3.992 29 C -0.124 4.124 30 C -0.132 4.132 31 H 0.255 0.745 32 H 0.383 0.617 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.398 0.602 38 H 0.168 0.832 39 H 0.175 0.825 40 H 0.162 0.838 41 H 0.146 0.854 42 H 0.160 0.840 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.618 -28.513 -3.517 30.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.366 5.366 10 C 0.067 3.933 11 H 0.064 0.936 12 C -0.159 4.159 13 C -0.158 4.158 14 C 0.042 3.958 15 H 0.109 0.891 16 N -0.366 5.366 17 C 0.346 3.654 18 O -0.404 6.404 19 C -0.177 4.177 20 C -0.014 4.014 21 N -0.164 5.164 22 C -0.042 4.042 23 C -0.010 4.010 24 N -0.177 5.177 25 C -0.069 4.069 26 C -0.153 4.153 27 C -0.093 4.093 28 C -0.019 4.019 29 C -0.163 4.163 30 C -0.173 4.173 31 H 0.065 0.935 32 H 0.217 0.783 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.233 0.767 38 H 0.185 0.815 39 H 0.192 0.808 40 H 0.179 0.821 41 H 0.164 0.836 42 H 0.177 0.823 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.201 -29.255 -3.608 31.191 hybrid contribution -0.534 1.941 -0.519 2.079 sum 9.667 -27.314 -4.127 29.266 Atomic orbital electron populations 1.69659 1.05087 1.25605 1.57795 1.24738 0.95505 0.97661 1.03122 0.86214 0.78645 0.83980 0.77499 1.21781 1.21805 1.20801 1.19240 0.90967 0.84158 1.42515 0.91226 1.42425 1.05788 0.99780 1.88557 1.20242 0.94321 0.86007 0.92748 0.93559 1.21753 0.98940 0.93351 1.01894 1.21763 1.00994 0.98442 0.94599 1.21211 0.95488 0.81244 0.97893 0.89125 1.46099 1.52965 1.22052 1.15514 1.17924 0.80762 0.83086 0.83658 1.90821 1.43258 1.73247 1.33063 1.21190 1.02517 0.97519 0.96515 1.23179 0.89614 0.92210 0.96438 1.67894 1.17520 1.03740 1.27231 1.20067 0.97688 0.96573 0.89900 1.23180 0.93614 0.87406 0.96820 1.67474 1.18038 1.32301 0.99871 1.22341 0.93412 0.95635 0.95537 1.22028 0.99954 0.94649 0.98663 1.18960 0.98693 0.96072 0.95595 1.21966 0.91937 0.89934 0.98044 1.21901 0.98622 0.95368 1.00454 1.22225 0.99789 0.94412 1.00909 0.93549 0.78300 0.91922 0.91241 0.91730 0.91400 0.76734 0.81543 0.80753 0.82113 0.83579 0.82292 0.92160 0.92328 0.92455 0.91728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.02 13.06 55.49 0.72 -27.30 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 8 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 9 N -0.73 -17.74 5.12 -53.42 -0.27 -18.02 16 10 C 0.18 3.32 2.77 -67.93 -0.19 3.13 16 11 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 12 C -0.12 -1.82 5.39 -26.74 -0.14 -1.96 16 13 C -0.12 -1.33 5.39 -26.74 -0.14 -1.48 16 14 C 0.14 1.73 2.45 -67.93 -0.17 1.57 16 15 H 0.09 1.27 7.58 -51.93 -0.39 0.87 16 16 N -0.72 -6.73 5.03 -54.74 -0.28 -7.01 16 17 C 0.56 6.19 7.74 -12.32 -0.10 6.09 16 18 O -0.53 -7.82 16.05 5.33 0.09 -7.73 16 19 C -0.17 -1.52 5.89 -104.78 -0.62 -2.14 16 20 C 0.16 1.21 10.68 -17.06 -0.18 1.03 16 21 N -0.46 -4.02 10.33 -10.65 -0.11 -4.13 16 22 C 0.08 0.72 6.62 -84.81 -0.56 0.16 16 23 C 0.16 1.28 11.25 -16.93 -0.19 1.09 16 24 N -0.47 -3.86 10.28 -13.11 -0.13 -4.00 16 25 C 0.07 0.47 11.08 -17.96 -0.20 0.27 16 26 C -0.13 -0.83 9.88 -39.39 -0.39 -1.22 16 27 C -0.09 -0.71 5.75 -106.80 -0.61 -1.32 16 28 C 0.01 0.07 9.51 -38.48 -0.37 -0.30 16 29 C -0.12 -1.72 5.49 -26.75 -0.15 -1.86 16 30 C -0.13 -2.31 5.50 -26.75 -0.15 -2.46 16 31 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.38 10.02 7.80 -40.82 -0.32 9.70 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.40 2.47 6.63 -40.82 -0.27 2.20 16 38 H 0.17 0.74 6.37 -52.49 -0.33 0.41 16 39 H 0.18 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.16 0.59 8.06 -52.48 -0.42 0.16 16 41 H 0.15 0.54 8.06 -52.48 -0.42 0.12 16 42 H 0.16 1.23 7.71 -52.49 -0.40 0.82 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 46 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 LS Contribution 381.18 15.07 5.74 5.74 Total: -1.00 -33.93 381.18 -10.00 -43.93 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -6.34 Total: 7.81 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -4.40 Total: -6.56 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: -0.07 Total: -60.46 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: 0.09 Total: -7.73 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.93 -10.00 -43.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034689764.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.390 kcal (2) G-P(sol) polarization free energy of solvation -33.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds