Wall clock time and date at job start Tue Mar 31 2020 23:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00340 * 2 1 4 4 H 1.48502 * 109.46962 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46995 * 299.99697 * 3 2 1 6 6 H 1.48497 * 109.47041 * 59.99616 * 3 2 1 7 7 C 1.38821 * 119.99477 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99619 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00145 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00125 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.46738 * 34.99764 * 10 9 7 12 12 C 1.52997 * 109.47313 * 154.99862 * 10 9 7 13 13 C 1.52992 * 109.47375 * 180.02562 * 12 10 9 14 14 C 1.53007 * 109.47138 * 300.00223 * 13 12 10 15 15 H 1.09005 * 109.46607 * 300.00040 * 14 13 12 16 16 N 1.46493 * 109.47043 * 179.97438 * 14 13 12 17 17 C 1.34781 * 120.00108 * 154.99796 * 16 14 13 18 18 O 1.21503 * 119.99283 * 0.02562 * 17 16 14 19 19 C 1.48275 * 120.00187 * 179.97438 * 17 16 14 20 20 C 1.40375 * 119.18716 * 180.02562 * 19 17 16 21 21 C 1.36550 * 119.82770 * 179.97438 * 20 19 17 22 22 C 1.40550 * 118.05699 * 0.02562 * 21 20 19 23 23 C 1.40528 * 122.20912 * 180.22958 * 22 21 20 24 24 C 1.36253 * 118.68667 * 180.23504 * 23 22 21 25 25 N 1.32586 * 121.79994 * 359.49389 * 24 23 22 26 26 C 1.31122 * 122.88005 * 0.26747 * 25 24 23 27 27 C 1.40866 * 119.95551 * 359.97438 * 26 25 24 28 28 N 1.31889 * 119.18973 * 0.02562 * 19 17 16 29 29 C 1.52997 * 109.47170 * 59.99651 * 14 13 12 30 30 C 1.52995 * 109.47114 * 275.00352 * 10 9 7 31 31 H 0.96997 * 120.00053 * 0.02562 * 1 2 3 32 32 H 0.97000 * 120.00183 * 359.97438 * 9 7 2 33 33 H 1.09005 * 109.47039 * 59.99807 * 12 10 9 34 34 H 1.09008 * 109.47227 * 300.00412 * 12 10 9 35 35 H 1.08996 * 109.47613 * 179.97438 * 13 12 10 36 36 H 1.09005 * 109.47404 * 59.99774 * 13 12 10 37 37 H 0.97002 * 120.00432 * 334.99856 * 16 14 13 38 38 H 1.08004 * 120.08769 * 0.02829 * 20 19 17 39 39 H 1.07997 * 120.97636 * 180.02562 * 21 20 19 40 40 H 1.08007 * 120.65493 * 359.97438 * 23 22 21 41 41 H 1.08002 * 119.10296 * 179.78432 * 24 23 22 42 42 H 1.08003 * 120.02369 * 179.97438 * 26 25 24 43 43 H 1.09009 * 109.47119 * 59.99898 * 29 14 13 44 44 H 1.08997 * 109.47593 * 180.02562 * 29 14 13 45 45 H 1.09002 * 109.46838 * 299.99350 * 30 10 9 46 46 H 1.08996 * 109.47372 * 59.99326 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0005 11 1 2.9686 -3.5507 0.5900 12 6 1.1806 -4.7522 0.6102 13 6 1.9457 -6.0771 0.6108 14 6 2.3101 -6.4563 -0.8261 15 1 1.3995 -6.5627 -1.4158 16 7 3.0432 -7.7246 -0.8254 17 6 3.0350 -8.5082 -1.9220 18 8 2.4200 -8.1624 -2.9111 19 6 3.7775 -9.7917 -1.9215 20 6 3.7579 -10.5943 -3.0730 21 6 4.4375 -11.7786 -3.0872 22 6 5.1400 -12.1515 -1.9284 23 6 5.8722 -13.3483 -1.8489 24 6 6.5228 -13.6412 -0.6881 25 7 6.4897 -12.8252 0.3564 26 6 5.8321 -11.6908 0.3530 27 6 5.1203 -11.2939 -0.7960 28 7 4.4401 -10.1511 -0.8393 29 6 3.1873 -5.3610 -1.4357 30 6 2.4218 -4.0357 -1.4364 31 1 -0.4850 0.8400 -0.0004 32 1 0.3554 -2.3881 0.0005 33 1 0.2698 -4.8584 0.0207 34 1 0.9213 -4.4823 1.6340 35 1 1.3209 -6.8573 1.0455 36 1 2.8563 -5.9706 1.2004 37 1 3.5345 -8.0004 -0.0359 38 1 3.2073 -10.2756 -3.9459 39 1 4.4353 -12.4103 -3.9631 40 1 5.9147 -14.0247 -2.6898 41 1 7.0846 -14.5610 -0.6184 42 1 5.8362 -11.0612 1.2305 43 1 4.0979 -5.2544 -0.8460 44 1 3.4466 -5.6308 -2.4594 45 1 1.5110 -4.1420 -2.0259 46 1 3.0467 -3.2554 -1.8707 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034690461.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:31 Heat of formation + Delta-G solvation = 31.061637 kcal Electronic energy + Delta-G solvation = -27989.242383 eV Core-core repulsion = 24071.395635 eV Total energy + Delta-G solvation = -3917.846749 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.80531 -40.13631 -38.54983 -37.70248 -35.00115 -34.37150 -33.03092 -32.07076 -31.16102 -30.45536 -30.37974 -27.58128 -25.96253 -24.84920 -23.57952 -23.22664 -22.38107 -21.63321 -20.65410 -19.68127 -18.95222 -18.35983 -17.97730 -17.03035 -16.55498 -16.14519 -15.70668 -15.40346 -15.21829 -14.90577 -14.78318 -14.58617 -14.06570 -13.82707 -13.70546 -13.59320 -13.55559 -13.18750 -12.88426 -12.64522 -12.53584 -12.02675 -11.79791 -11.46749 -11.42891 -11.05934 -10.93521 -10.81324 -10.73725 -10.64193 -10.16682 -10.10589 -10.08123 -9.97039 -9.86375 -9.74296 -9.57794 -9.09212 -8.96774 -8.83615 -6.91747 -5.73643 -3.01858 -0.50462 0.01001 1.21850 2.01269 2.80666 2.91000 3.43957 3.45038 3.50742 3.52880 3.56072 3.79348 3.89968 4.07883 4.15667 4.30432 4.58611 4.61668 4.73110 4.89463 4.95453 5.04998 5.09739 5.17242 5.28057 5.30899 5.53827 5.56266 5.61891 5.69176 5.73683 5.74983 5.84959 5.88890 5.97365 6.03725 6.24145 6.26128 6.31480 6.48332 6.57516 6.64071 6.73738 6.92579 7.01177 7.17187 7.33566 7.41846 7.73765 7.98542 8.45315 9.56324 10.15176 10.49662 11.49214 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026326 B = 0.001862 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.324329 B =15037.721556 C =15390.324319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.016 4.016 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.235 4.235 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.176 3.824 11 H 0.047 0.953 12 C -0.120 4.120 13 C -0.119 4.119 14 C 0.143 3.857 15 H 0.090 0.910 16 N -0.700 5.700 17 C 0.566 3.434 18 O -0.526 6.526 19 C 0.123 3.877 20 C -0.106 4.106 21 C -0.066 4.066 22 C -0.065 4.065 23 C -0.147 4.147 24 C 0.082 3.918 25 N -0.476 5.476 26 C 0.177 3.823 27 C 0.065 3.935 28 N -0.425 5.425 29 C -0.124 4.124 30 C -0.132 4.132 31 H 0.254 0.746 32 H 0.383 0.617 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.409 0.591 38 H 0.157 0.843 39 H 0.152 0.848 40 H 0.144 0.856 41 H 0.160 0.840 42 H 0.177 0.823 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.041 -30.727 -3.180 32.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.366 5.366 10 C 0.066 3.934 11 H 0.065 0.935 12 C -0.159 4.159 13 C -0.157 4.157 14 C 0.040 3.960 15 H 0.108 0.892 16 N -0.350 5.350 17 C 0.349 3.651 18 O -0.401 6.401 19 C -0.032 4.032 20 C -0.128 4.128 21 C -0.092 4.092 22 C -0.072 4.072 23 C -0.168 4.168 24 C -0.060 4.060 25 N -0.184 5.184 26 C 0.003 3.997 27 C -0.061 4.061 28 N -0.138 5.138 29 C -0.163 4.163 30 C -0.173 4.173 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.244 0.756 38 H 0.175 0.825 39 H 0.169 0.831 40 H 0.162 0.838 41 H 0.177 0.823 42 H 0.194 0.806 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.263 -30.193 -2.393 32.314 hybrid contribution -0.017 0.459 -1.282 1.362 sum 11.247 -29.734 -3.675 32.001 Atomic orbital electron populations 1.69670 1.05079 1.25448 1.57986 1.24742 0.95511 0.97656 1.03236 0.86140 0.78788 0.84286 0.77140 1.20593 1.21944 1.21943 1.19293 0.91005 0.84156 1.42217 0.91167 1.42436 1.05796 0.99801 1.88536 1.20249 0.94332 0.85980 0.92790 0.93548 1.21752 0.98915 0.93384 1.01844 1.21752 1.01009 0.98332 0.94644 1.21234 0.95463 0.81433 0.97911 0.89165 1.46040 1.51823 1.21169 1.15975 1.17833 0.80749 0.82661 0.83878 1.90824 1.43221 1.72871 1.33153 1.21597 0.95665 0.95711 0.90264 1.21941 0.97901 0.93649 0.99284 1.21449 0.94276 0.96176 0.97256 1.19101 0.97406 0.95726 0.94937 1.21932 0.98169 0.96412 1.00278 1.22369 0.96688 0.98560 0.88394 1.67538 1.17448 1.03855 1.29594 1.23282 0.88783 0.91911 0.95719 1.19897 0.99048 0.91696 0.95424 1.67748 1.05093 1.14788 1.26171 1.21916 0.98644 0.95324 1.00440 1.22233 0.99763 0.94413 1.00856 0.93628 0.78308 0.91931 0.91282 0.91754 0.91382 0.75555 0.82516 0.83063 0.83825 0.82262 0.80613 0.92143 0.92328 0.92435 0.91747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.32 13.06 55.49 0.72 -27.59 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 0.90 22.53 29.55 -169.99 -5.02 17.51 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 7 C -0.24 -6.53 9.93 -15.06 -0.15 -6.68 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.07 5.12 -53.43 -0.27 -18.34 16 10 C 0.18 3.42 2.77 -67.93 -0.19 3.23 16 11 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 12 C -0.12 -1.90 5.39 -26.74 -0.14 -2.04 16 13 C -0.12 -1.47 5.39 -26.73 -0.14 -1.61 16 14 C 0.14 1.88 2.45 -67.93 -0.17 1.71 16 15 H 0.09 1.34 7.58 -51.93 -0.39 0.94 16 16 N -0.70 -8.03 5.06 -54.61 -0.28 -8.31 16 17 C 0.57 7.09 7.78 -12.13 -0.09 7.00 16 18 O -0.53 -8.12 15.94 5.36 0.09 -8.04 16 19 C 0.12 1.28 6.75 -82.91 -0.56 0.72 16 20 C -0.11 -0.89 9.54 -39.39 -0.38 -1.27 16 21 C -0.07 -0.42 9.93 -39.32 -0.39 -0.81 16 22 C -0.06 -0.49 5.75 -106.70 -0.61 -1.10 16 23 C -0.15 -0.80 9.88 -39.43 -0.39 -1.19 16 24 C 0.08 0.50 11.07 -17.94 -0.20 0.30 16 25 N -0.48 -3.90 10.28 -13.05 -0.13 -4.03 16 26 C 0.18 1.41 11.26 -16.86 -0.19 1.22 16 27 C 0.07 0.58 6.62 -84.88 -0.56 0.02 16 28 N -0.43 -4.18 9.49 -7.51 -0.07 -4.25 16 29 C -0.12 -1.83 5.49 -26.71 -0.15 -1.97 16 30 C -0.13 -2.37 5.51 -26.71 -0.15 -2.52 16 31 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.38 10.17 7.80 -40.82 -0.32 9.85 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.07 1.12 8.14 -51.92 -0.42 0.69 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.41 3.95 7.90 -40.82 -0.32 3.63 16 38 H 0.16 1.21 7.60 -52.48 -0.40 0.81 16 39 H 0.15 0.47 8.06 -52.49 -0.42 0.04 16 40 H 0.14 0.35 8.06 -52.48 -0.42 -0.07 16 41 H 0.16 0.52 8.06 -52.49 -0.42 0.10 16 42 H 0.18 1.04 8.06 -52.48 -0.42 0.61 16 43 H 0.06 0.85 8.14 -51.92 -0.42 0.42 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 383.31 15.07 5.78 5.78 Total: -1.00 -33.46 383.31 -10.22 -43.68 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -6.47 Total: 9.15 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -4.56 Total: -5.56 kcal Atomic # 7 Polarization: -62.49 SS G_CDS: -0.03 Total: -62.52 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: 0.09 Total: -8.04 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.46 -10.22 -43.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034690461.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.739 kcal (2) G-P(sol) polarization free energy of solvation -33.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds