Wall clock time and date at job start Tue Mar 31 2020 23:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 119.99791 * 2 1 4 4 H 1.48495 * 109.46893 * 180.02562 * 3 2 1 5 5 H 1.48490 * 109.47109 * 300.00523 * 3 2 1 6 6 H 1.48504 * 109.47027 * 60.00508 * 3 2 1 7 7 C 1.38805 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99730 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00085 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99761 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.46930 * 324.99138 * 10 9 7 12 12 C 1.52995 * 109.47519 * 84.99852 * 10 9 7 13 13 C 1.52996 * 109.47431 * 180.02562 * 12 10 9 14 14 C 1.53008 * 109.46823 * 299.99447 * 13 12 10 15 15 H 1.09000 * 109.46859 * 300.00246 * 14 13 12 16 16 N 1.46496 * 109.47115 * 179.97438 * 14 13 12 17 17 C 1.34781 * 119.99962 * 85.00028 * 16 14 13 18 18 O 1.21535 * 119.99569 * 0.02562 * 17 16 14 19 19 C 1.47996 * 120.00118 * 179.97438 * 17 16 14 20 20 C 1.38888 * 121.17087 * 354.23355 * 19 17 16 21 21 C 1.39349 * 119.67522 * 179.97438 * 20 19 17 22 22 N 1.31103 * 121.90042 * 0.02562 * 21 20 19 23 23 C 1.33288 * 121.61720 * 359.97438 * 22 21 20 24 24 C 1.40839 * 121.90686 * 179.97438 * 23 22 21 25 25 C 1.36162 * 118.76430 * 180.02562 * 24 23 22 26 26 N 1.32537 * 121.96190 * 0.02562 * 25 24 23 27 27 C 1.31336 * 122.60332 * 359.97438 * 26 25 24 28 28 C 1.40084 * 119.87908 * 359.74200 * 27 26 25 29 29 C 1.53004 * 109.46738 * 60.00199 * 14 13 12 30 30 C 1.52997 * 109.46666 * 204.99620 * 10 9 7 31 31 H 0.97001 * 120.00438 * 359.97438 * 1 2 3 32 32 H 0.97000 * 120.00096 * 359.97438 * 9 7 2 33 33 H 1.09007 * 109.46734 * 299.99646 * 12 10 9 34 34 H 1.09000 * 109.47349 * 59.99243 * 12 10 9 35 35 H 1.09000 * 109.47604 * 59.99237 * 13 12 10 36 36 H 1.09004 * 109.47447 * 179.97438 * 13 12 10 37 37 H 0.96997 * 120.00382 * 265.00511 * 16 14 13 38 38 H 1.08004 * 120.16397 * 359.97438 * 20 19 17 39 39 H 1.07998 * 119.05013 * 179.97438 * 21 20 19 40 40 H 1.08002 * 120.61670 * 359.97438 * 24 23 22 41 41 H 1.08001 * 119.01751 * 179.97438 * 25 24 23 42 42 H 1.08003 * 120.06299 * 180.02562 * 27 26 25 43 43 H 1.09002 * 109.46375 * 180.02562 * 29 14 13 44 44 H 1.08993 * 109.47222 * 59.99755 * 29 14 13 45 45 H 1.09001 * 109.47471 * 60.00162 * 30 10 9 46 46 H 1.09001 * 109.47707 * 299.99754 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3965 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 2.0581 -3.6567 -0.0016 11 1 2.9691 -3.5502 -0.5904 12 6 2.4210 -4.0362 1.4354 13 6 3.1866 -5.3608 1.4354 14 6 2.3102 -6.4563 0.8245 15 1 1.3991 -6.5632 1.4132 16 7 3.0435 -7.7245 0.8238 17 6 3.0347 -8.5086 1.9200 18 8 2.4180 -8.1636 2.9089 19 6 3.7749 -9.7902 1.9192 20 6 4.3878 -10.2656 0.7671 21 6 5.0772 -11.4761 0.8017 22 7 5.1682 -12.1905 1.8972 23 6 4.6046 -11.7947 3.0383 24 6 4.6980 -12.5576 4.2185 25 6 4.0972 -12.0926 5.3485 26 7 3.4297 -10.9478 5.3680 27 6 3.3016 -10.1852 4.3064 28 6 3.8883 -10.5717 3.0945 29 6 1.9474 -6.0768 -0.6127 30 6 1.1813 -4.7518 -0.6123 31 1 -0.4851 0.8400 0.0004 32 1 0.3555 -2.3880 -0.0016 33 1 3.0456 -3.2560 1.8705 34 1 1.5099 -4.1427 2.0242 35 1 4.0977 -5.2540 0.8467 36 1 3.4455 -5.6310 2.4592 37 1 3.5354 -8.0000 0.0345 38 1 4.3302 -9.6999 -0.1512 39 1 5.5496 -11.8365 -0.1002 40 1 5.2355 -13.4943 4.2269 41 1 4.1659 -12.6746 6.2557 42 1 2.7487 -9.2595 4.3687 43 1 1.3227 -6.8570 -1.0477 44 1 2.8584 -5.9698 -1.2013 45 1 0.9228 -4.4815 -1.6362 46 1 0.2702 -4.8584 -0.0236 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034700839.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:54 Heat of formation + Delta-G solvation = 36.887922 kcal Electronic energy + Delta-G solvation = -28358.882528 eV Core-core repulsion = 24441.288426 eV Total energy + Delta-G solvation = -3917.594102 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.82029 -40.10058 -38.44604 -38.09283 -35.12686 -34.11216 -33.11994 -31.98460 -31.13436 -30.50018 -30.40099 -27.63527 -25.81108 -24.61443 -24.07752 -23.29250 -22.47205 -21.37356 -20.93859 -19.67343 -18.93837 -18.43943 -17.74872 -17.07049 -16.48347 -16.31746 -15.64843 -15.49472 -15.21079 -15.01209 -14.78900 -14.65807 -14.13136 -13.88621 -13.80991 -13.62438 -13.49004 -13.20199 -13.09613 -12.63311 -12.44782 -12.13136 -11.89609 -11.52428 -11.20382 -11.04399 -10.88425 -10.85392 -10.80196 -10.62714 -10.22948 -10.16724 -10.12982 -9.83944 -9.81807 -9.68902 -9.59581 -9.23666 -8.93461 -8.88704 -6.96660 -5.77713 -3.06415 -0.52092 0.19719 1.11783 2.34521 2.62368 2.77118 3.42118 3.47765 3.50000 3.62579 3.65052 3.92772 4.01183 4.08061 4.21629 4.25557 4.57363 4.68277 4.74588 4.83329 4.92473 4.96932 5.08393 5.16567 5.26729 5.43244 5.45481 5.48318 5.52328 5.60648 5.63972 5.73917 5.78855 5.88869 5.94161 6.08452 6.15224 6.21478 6.25874 6.38080 6.48869 6.55710 6.66031 6.93268 7.10246 7.10588 7.21184 7.57412 7.69379 7.78652 8.41041 9.52173 10.10335 10.44596 11.45018 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024203 B = 0.002010 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.597447 B =13926.675968 C =14439.959456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.177 3.823 11 H 0.046 0.954 12 C -0.132 4.132 13 C -0.124 4.124 14 C 0.143 3.857 15 H 0.093 0.907 16 N -0.709 5.709 17 C 0.557 3.443 18 O -0.519 6.519 19 C -0.042 4.042 20 C -0.146 4.146 21 C 0.149 3.851 22 N -0.463 5.463 23 C 0.154 3.846 24 C -0.151 4.151 25 C 0.095 3.905 26 N -0.486 5.486 27 C 0.162 3.838 28 C -0.135 4.135 29 C -0.119 4.119 30 C -0.121 4.121 31 H 0.254 0.746 32 H 0.384 0.616 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.399 0.601 38 H 0.148 0.852 39 H 0.172 0.828 40 H 0.147 0.853 41 H 0.161 0.839 42 H 0.201 0.799 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.995 -27.262 0.940 29.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.366 5.366 10 C 0.067 3.933 11 H 0.064 0.936 12 C -0.173 4.173 13 C -0.164 4.164 14 C 0.040 3.960 15 H 0.111 0.889 16 N -0.359 5.359 17 C 0.343 3.657 18 O -0.396 6.396 19 C -0.055 4.055 20 C -0.167 4.167 21 C -0.025 4.025 22 N -0.171 5.171 23 C 0.027 3.973 24 C -0.172 4.172 25 C -0.049 4.049 26 N -0.194 5.194 27 C -0.009 4.009 28 C -0.139 4.139 29 C -0.158 4.158 30 C -0.159 4.159 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.234 0.766 38 H 0.166 0.834 39 H 0.189 0.811 40 H 0.165 0.835 41 H 0.178 0.822 42 H 0.217 0.783 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.088 0.912 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.767 -27.519 2.603 29.316 hybrid contribution 0.476 1.227 -1.241 1.809 sum 10.242 -26.291 1.361 28.249 Atomic orbital electron populations 1.69666 1.05089 1.25522 1.57826 1.24745 0.95515 0.97691 1.03122 0.86144 0.78774 0.84260 0.77183 1.20594 1.21918 1.21883 1.19272 0.90981 0.84129 1.42436 0.91179 1.42434 1.05804 0.99786 1.88545 1.20241 0.94303 0.86018 0.92756 0.93584 1.22235 0.99824 0.94365 1.00916 1.21913 0.98579 0.95357 1.00510 1.21270 0.95545 0.81097 0.98043 0.88879 1.46091 1.52482 1.21850 1.15515 1.18021 0.80845 0.83095 0.83787 1.90642 1.43268 1.73215 1.32478 1.20421 0.96740 0.94791 0.93571 1.22520 0.97639 0.97985 0.98560 1.23143 0.93063 0.89895 0.96388 1.67870 1.17906 1.32834 0.98518 1.18924 0.93646 0.91524 0.93159 1.21721 1.02525 1.01506 0.91431 1.22456 0.92152 0.92403 0.97905 1.67771 1.15664 1.05223 1.30790 1.24511 0.91943 0.98903 0.85559 1.19685 1.01789 0.96377 0.96093 1.21774 1.00976 0.98513 0.94508 1.21767 0.98954 0.93295 1.01931 0.93574 0.78285 0.91676 0.92359 0.92180 0.92202 0.76571 0.83398 0.81101 0.83487 0.82189 0.78296 0.91730 0.91428 0.91228 0.91851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.93 13.06 55.49 0.72 -27.20 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 7 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.73 -17.59 5.12 -53.43 -0.27 -17.86 16 10 C 0.18 3.26 2.77 -67.93 -0.19 3.07 16 11 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 12 C -0.13 -2.27 5.50 -26.74 -0.15 -2.41 16 13 C -0.12 -1.67 5.49 -26.73 -0.15 -1.81 16 14 C 0.14 1.64 2.45 -67.93 -0.17 1.47 16 15 H 0.09 1.24 7.58 -51.93 -0.39 0.85 16 16 N -0.71 -6.30 5.03 -54.70 -0.28 -6.57 16 17 C 0.56 6.01 7.73 -12.26 -0.09 5.91 16 18 O -0.52 -7.27 13.27 5.34 0.07 -7.20 16 19 C -0.04 -0.39 5.93 -104.37 -0.62 -1.01 16 20 C -0.15 -0.88 9.60 -38.93 -0.37 -1.26 16 21 C 0.15 0.93 11.14 -17.45 -0.19 0.74 16 22 N -0.46 -4.28 10.33 -10.95 -0.11 -4.39 16 23 C 0.15 1.59 6.63 -84.88 -0.56 1.03 16 24 C -0.15 -1.34 10.08 -39.35 -0.40 -1.73 16 25 C 0.10 0.86 11.06 -17.99 -0.20 0.66 16 26 N -0.49 -5.74 10.31 -13.24 -0.14 -5.88 16 27 C 0.16 1.95 10.52 -17.07 -0.18 1.77 16 28 C -0.13 -1.48 5.77 -106.55 -0.61 -2.09 16 29 C -0.12 -1.27 5.39 -26.70 -0.14 -1.42 16 30 C -0.12 -1.77 5.39 -26.70 -0.14 -1.92 16 31 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.38 9.95 7.80 -40.82 -0.32 9.63 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.40 2.24 6.78 -40.82 -0.28 1.96 16 38 H 0.15 0.37 6.56 -52.48 -0.34 0.02 16 39 H 0.17 0.43 8.06 -52.49 -0.42 0.00 16 40 H 0.15 0.96 8.06 -52.49 -0.42 0.53 16 41 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 42 H 0.20 2.57 5.09 -52.48 -0.27 2.31 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 376.21 15.07 5.67 5.67 Total: -1.00 -33.73 376.21 -9.99 -43.72 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -6.22 Total: 8.63 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -4.42 Total: -6.09 kcal Atomic # 7 Polarization: -61.83 SS G_CDS: -0.07 Total: -61.91 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: 0.07 Total: -7.20 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.73 -9.99 -43.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034700839.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.608 kcal (2) G-P(sol) polarization free energy of solvation -33.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds