Wall clock time and date at job start Tue Mar 31 2020 23:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48501 * 109.46896 * 269.99741 * 3 2 1 5 5 H 1.48499 * 109.47039 * 29.99902 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99702 * 3 2 1 7 7 C 1.38811 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 359.72375 * 7 2 1 10 10 C 1.46504 * 119.99781 * 180.27904 * 9 7 2 11 11 H 1.08999 * 109.46902 * 325.00006 * 10 9 7 12 12 C 1.52995 * 109.47009 * 85.00152 * 10 9 7 13 13 C 1.53009 * 109.46559 * 179.97438 * 12 10 9 14 14 C 1.52995 * 109.47383 * 299.99834 * 13 12 10 15 15 H 1.08998 * 109.46913 * 300.00435 * 14 13 12 16 16 N 1.46499 * 109.47455 * 180.02562 * 14 13 12 17 17 C 1.34783 * 119.99791 * 84.99663 * 16 14 13 18 18 O 1.21486 * 119.99877 * 0.02562 * 17 16 14 19 19 C 1.48371 * 119.99679 * 180.02562 * 17 16 14 20 20 C 1.40213 * 119.21734 * 179.73274 * 19 17 16 21 21 C 1.36642 * 119.90523 * 179.71842 * 20 19 17 22 22 C 1.40561 * 118.11027 * 0.53748 * 21 20 19 23 23 C 1.40393 * 122.06091 * 179.74969 * 22 21 20 24 24 N 1.31247 * 119.87599 * 179.97438 * 23 22 21 25 25 C 1.32592 * 122.67960 * 0.02562 * 24 23 22 26 26 C 1.36105 * 121.99544 * 359.97438 * 25 24 23 27 27 C 1.40946 * 118.77108 * 0.02562 * 26 25 24 28 28 N 1.31987 * 119.22338 * 0.02562 * 19 17 16 29 29 C 1.53000 * 109.47023 * 60.00005 * 14 13 12 30 30 C 1.53000 * 109.47430 * 300.00049 * 29 14 13 31 31 H 0.96995 * 120.00147 * 0.02562 * 1 2 3 32 32 H 0.97000 * 119.99808 * 0.27579 * 9 7 2 33 33 H 1.09001 * 109.47135 * 299.99446 * 12 10 9 34 34 H 1.08999 * 109.47409 * 60.00164 * 12 10 9 35 35 H 1.09002 * 109.46651 * 179.97438 * 13 12 10 36 36 H 1.08999 * 109.46950 * 60.00099 * 13 12 10 37 37 H 0.97001 * 120.00106 * 265.00670 * 16 14 13 38 38 H 1.07996 * 120.04556 * 359.97438 * 20 19 17 39 39 H 1.07999 * 120.94472 * 180.26561 * 21 20 19 40 40 H 1.08003 * 120.06300 * 0.02562 * 23 22 21 41 41 H 1.07998 * 119.00074 * 179.97438 * 25 24 23 42 42 H 1.08002 * 120.61228 * 180.02562 * 26 25 24 43 43 H 1.08995 * 109.47001 * 179.97438 * 29 14 13 44 44 H 1.08999 * 109.47045 * 59.99897 * 29 14 13 45 45 H 1.08998 * 109.47384 * 300.00108 * 30 29 14 46 46 H 1.08993 * 109.47425 * 179.97438 * 30 29 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0068 10 6 2.0582 -3.6567 0.0135 11 1 2.9689 -3.5535 -0.5764 12 6 2.4220 -4.0279 1.4525 13 6 3.1866 -5.3533 1.4595 14 6 2.3090 -6.4515 0.8558 15 1 1.3983 -6.5542 1.4459 16 7 3.0408 -7.7206 0.8631 17 6 3.0314 -8.4977 1.9644 18 8 2.4156 -8.1458 2.9508 19 6 3.7730 -9.7827 1.9719 20 6 3.7567 -10.5755 3.1282 21 6 4.4301 -11.7643 3.1486 22 6 5.1340 -12.1467 1.9936 23 6 5.8579 -13.3477 1.9254 24 7 6.4994 -13.6627 0.8246 25 6 6.4995 -12.8872 -0.2509 26 6 5.8289 -11.7034 -0.2864 27 6 5.1146 -11.2938 0.8575 28 7 4.4371 -10.1497 0.8919 29 6 1.9451 -6.0803 -0.5831 30 6 1.1805 -4.7550 -0.5902 31 1 -0.4850 0.8400 -0.0004 32 1 0.3556 -2.3880 0.0068 33 1 3.0469 -3.2453 1.8827 34 1 1.5113 -4.1311 2.0425 35 1 3.4461 -5.6175 2.4847 36 1 4.0972 -5.2504 0.8694 37 1 3.5322 -8.0016 0.0754 38 1 3.2094 -10.2490 4.0000 39 1 4.4254 -12.3902 4.0287 40 1 5.8861 -14.0115 2.7769 41 1 7.0484 -13.2046 -1.1252 42 1 5.8438 -11.0893 -1.1748 43 1 1.3203 -6.8629 -1.0133 44 1 2.8558 -5.9774 -1.1732 45 1 0.2699 -4.8577 -0.0002 46 1 0.9217 -4.4903 -1.6153 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034745993.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:28 Heat of formation + Delta-G solvation = 31.022040 kcal Electronic energy + Delta-G solvation = -27986.101184 eV Core-core repulsion = 24068.252718 eV Total energy + Delta-G solvation = -3917.848466 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.79907 -40.15397 -38.55449 -37.72037 -35.00711 -34.23753 -33.10115 -32.15874 -30.98940 -30.56956 -30.40690 -27.65695 -26.00979 -24.73032 -23.59152 -23.22202 -22.39370 -21.61439 -20.66049 -19.67173 -19.09805 -18.42831 -17.77517 -17.02544 -16.51940 -16.18245 -15.69516 -15.42443 -15.16894 -14.87784 -14.78761 -14.64717 -14.05609 -13.83437 -13.73254 -13.57332 -13.50897 -13.23069 -12.92198 -12.80811 -12.55211 -12.03983 -11.81325 -11.47275 -11.29197 -11.06769 -10.82416 -10.79724 -10.72256 -10.58233 -10.30143 -10.17663 -10.10906 -9.91559 -9.85693 -9.75771 -9.58183 -9.08675 -9.02852 -8.84203 -6.92636 -5.74155 -3.02540 -0.50682 0.00966 1.26072 2.00633 2.77855 2.91279 3.44716 3.45386 3.49994 3.51614 3.56020 3.77343 3.91901 4.10162 4.15612 4.30768 4.60198 4.62058 4.75229 4.87757 5.02067 5.03180 5.10511 5.18964 5.27770 5.34111 5.47407 5.52808 5.60302 5.67723 5.72783 5.76656 5.83569 5.87598 6.00906 6.03042 6.22268 6.24497 6.30014 6.46793 6.56117 6.62796 6.72575 6.97204 7.00431 7.16052 7.32738 7.38399 7.72469 7.95721 8.44759 9.55697 10.14389 10.48910 11.48594 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026454 B = 0.001857 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.182587 B =15071.842193 C =15417.564742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.177 3.823 11 H 0.046 0.954 12 C -0.132 4.132 13 C -0.124 4.124 14 C 0.143 3.857 15 H 0.091 0.909 16 N -0.700 5.700 17 C 0.564 3.436 18 O -0.523 6.523 19 C 0.145 3.855 20 C -0.131 4.131 21 C -0.037 4.037 22 C -0.156 4.156 23 C 0.160 3.840 24 N -0.484 5.484 25 C 0.088 3.912 26 C -0.134 4.134 27 C 0.153 3.847 28 N -0.448 5.448 29 C -0.119 4.119 30 C -0.120 4.120 31 H 0.254 0.746 32 H 0.383 0.617 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.409 0.591 38 H 0.157 0.843 39 H 0.154 0.846 40 H 0.170 0.830 41 H 0.162 0.838 42 H 0.150 0.850 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.927 -29.949 2.517 31.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.366 5.366 10 C 0.067 3.933 11 H 0.064 0.936 12 C -0.173 4.173 13 C -0.163 4.163 14 C 0.039 3.961 15 H 0.109 0.891 16 N -0.350 5.350 17 C 0.347 3.653 18 O -0.398 6.398 19 C -0.011 4.011 20 C -0.151 4.151 21 C -0.065 4.065 22 C -0.160 4.160 23 C -0.014 4.014 24 N -0.191 5.191 25 C -0.055 4.055 26 C -0.155 4.155 27 C 0.025 3.975 28 N -0.160 5.160 29 C -0.157 4.157 30 C -0.159 4.159 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.244 0.756 38 H 0.175 0.825 39 H 0.172 0.828 40 H 0.187 0.813 41 H 0.180 0.820 42 H 0.168 0.832 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.081 0.919 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.147 -29.752 2.195 31.848 hybrid contribution -0.021 1.106 0.426 1.185 sum 11.126 -28.647 2.621 30.843 Atomic orbital electron populations 1.69657 1.05079 1.25576 1.57869 1.24738 0.95510 0.97653 1.03195 0.86212 0.78660 0.84000 0.77461 1.21791 1.21822 1.20816 1.19244 0.90966 0.84163 1.42393 0.91234 1.42430 1.05788 0.99790 1.88551 1.20248 0.94321 0.85986 0.92786 0.93561 1.22226 0.99779 0.94395 1.00863 1.21907 0.98633 0.95316 1.00464 1.21240 0.95494 0.81399 0.97931 0.89134 1.46053 1.51808 1.21281 1.15823 1.17882 0.80839 0.82724 0.83893 1.90822 1.43022 1.72542 1.33423 1.21690 0.94076 0.95210 0.90093 1.21869 0.99561 0.94260 0.99454 1.21483 0.92468 0.95481 0.97020 1.19965 1.01640 0.98277 0.96091 1.23279 0.89800 0.92344 0.95934 1.67508 1.18286 1.33370 0.99978 1.22312 0.96402 0.90434 0.96366 1.21825 0.97417 0.98145 0.98079 1.18876 0.95092 0.90096 0.93483 1.67872 1.06531 1.15040 1.26551 1.21750 1.00999 0.98374 0.94608 1.21753 0.98925 0.93345 1.01866 0.93567 0.78298 0.91724 0.92420 0.92314 0.92173 0.75564 0.82514 0.82805 0.81326 0.82045 0.83210 0.91770 0.91418 0.91909 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.29 13.06 55.49 0.72 -27.56 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -18.06 5.12 -53.42 -0.27 -18.34 16 10 C 0.18 3.42 2.77 -67.93 -0.19 3.24 16 11 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 12 C -0.13 -2.38 5.50 -26.73 -0.15 -2.52 16 13 C -0.12 -1.83 5.49 -26.73 -0.15 -1.98 16 14 C 0.14 1.89 2.45 -67.93 -0.17 1.72 16 15 H 0.09 1.34 7.57 -51.93 -0.39 0.95 16 16 N -0.70 -8.13 5.07 -54.59 -0.28 -8.41 16 17 C 0.56 7.12 7.78 -12.09 -0.09 7.03 16 18 O -0.52 -8.09 15.94 5.38 0.09 -8.01 16 19 C 0.14 1.53 6.75 -82.89 -0.56 0.97 16 20 C -0.13 -1.09 9.54 -39.42 -0.38 -1.46 16 21 C -0.04 -0.22 9.92 -39.28 -0.39 -0.61 16 22 C -0.16 -1.15 5.75 -106.74 -0.61 -1.77 16 23 C 0.16 0.99 11.05 -16.99 -0.19 0.80 16 24 N -0.48 -3.73 10.30 -13.18 -0.14 -3.87 16 25 C 0.09 0.59 11.05 -17.99 -0.20 0.39 16 26 C -0.13 -0.98 10.08 -39.32 -0.40 -1.37 16 27 C 0.15 1.38 6.63 -84.86 -0.56 0.82 16 28 N -0.45 -4.55 9.50 -7.49 -0.07 -4.62 16 29 C -0.12 -1.48 5.39 -26.73 -0.14 -1.62 16 30 C -0.12 -1.90 5.39 -26.73 -0.14 -2.05 16 31 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.38 10.17 7.80 -40.82 -0.32 9.85 16 33 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.41 4.07 7.91 -40.82 -0.32 3.74 16 38 H 0.16 1.19 7.60 -52.49 -0.40 0.79 16 39 H 0.15 0.34 8.06 -52.49 -0.42 -0.08 16 40 H 0.17 0.46 8.06 -52.48 -0.42 0.04 16 41 H 0.16 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 383.31 15.07 5.78 5.78 Total: -1.00 -33.73 383.31 -10.23 -43.96 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -6.47 Total: 9.24 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -4.56 Total: -5.65 kcal Atomic # 7 Polarization: -62.77 SS G_CDS: -0.03 Total: -62.80 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: 0.09 Total: -8.01 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.73 -10.23 -43.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034745993.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.981 kcal (2) G-P(sol) polarization free energy of solvation -33.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds