Wall clock time and date at job start Tue Mar 31 2020 23:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 120.00168 * 2 1 4 4 H 1.48507 * 109.46816 * 269.99712 * 3 2 1 5 5 H 1.48498 * 109.47198 * 30.00067 * 3 2 1 6 6 H 1.48505 * 109.46950 * 150.00405 * 3 2 1 7 7 C 1.38810 * 119.99428 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99709 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00414 * 359.97438 * 7 2 1 10 10 C 1.47171 * 135.99655 * 359.63477 * 9 7 2 11 11 C 1.52941 * 87.85543 * 206.92000 * 10 9 7 12 12 C 1.47157 * 136.00148 * 179.97438 * 9 7 2 13 13 C 1.52552 * 114.11280 * 87.94779 * 11 10 9 14 14 C 1.53355 * 109.12898 * 190.31547 * 13 11 10 15 15 N 1.46888 * 108.75326 * 307.75891 * 14 13 11 16 16 C 1.34776 * 120.46610 * 235.64954 * 15 14 13 17 17 O 1.21640 * 120.00268 * 174.18526 * 16 15 14 18 18 C 1.47169 * 119.99657 * 354.18817 * 16 15 14 19 19 C 1.38587 * 120.72178 * 306.02613 * 18 16 15 20 20 C 1.38933 * 121.36186 * 179.97438 * 19 18 16 21 21 C 1.35825 * 122.59570 * 0.02562 * 20 19 18 22 22 C 1.40840 * 120.55524 * 0.02562 * 21 20 19 23 23 C 1.38427 * 134.89681 * 179.97438 * 22 21 20 24 24 N 1.33889 * 107.84678 * 179.97438 * 23 22 21 25 25 H 0.96996 * 125.02179 * 179.97438 * 24 23 22 26 26 N 1.39986 * 109.95893 * 359.97438 * 24 23 22 27 27 C 1.31483 * 109.01510 * 359.70099 * 26 24 23 28 28 C 1.46900 * 119.07238 * 55.62301 * 15 14 13 29 29 C 1.52553 * 114.11764 * 220.61553 * 11 10 9 30 30 H 0.96999 * 119.99225 * 359.97438 * 1 2 3 31 31 H 1.08997 * 113.49038 * 321.66483 * 10 9 7 32 32 H 1.09002 * 113.48925 * 92.17429 * 10 9 7 33 33 H 1.08997 * 113.49546 * 267.83074 * 12 9 7 34 34 H 1.09003 * 113.48822 * 38.34319 * 12 9 7 35 35 H 1.08997 * 109.53029 * 310.21018 * 13 11 10 36 36 H 1.08999 * 109.53120 * 70.42281 * 13 11 10 37 37 H 1.09006 * 109.59478 * 187.98054 * 14 13 11 38 38 H 1.08996 * 109.59055 * 67.53796 * 14 13 11 39 39 H 1.08003 * 119.32547 * 0.02562 * 19 18 16 40 40 H 1.07993 * 118.69970 * 180.02562 * 20 19 18 41 41 H 1.08003 * 119.72006 * 179.97438 * 21 20 19 42 42 H 1.08004 * 126.07794 * 0.02562 * 23 22 21 43 43 H 1.08998 * 109.58740 * 184.59331 * 28 15 14 44 44 H 1.08995 * 109.59303 * 64.14781 * 28 15 14 45 45 H 1.09001 * 109.53092 * 289.57032 * 29 11 10 46 46 H 1.08996 * 109.53067 * 49.71415 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 -0.0893 -2.7937 0.0064 11 6 0.3453 -4.0902 0.6914 12 6 1.6814 -3.8160 -0.0015 13 6 0.4036 -4.0018 2.2133 14 6 1.0899 -5.2579 2.7637 15 7 0.4239 -6.4426 2.2065 16 6 -0.0832 -7.3883 3.0219 17 8 -0.7248 -8.3115 2.5575 18 6 0.1395 -7.3040 4.4742 19 6 1.4211 -7.1873 4.9884 20 6 1.6465 -7.1062 6.3570 21 6 0.6391 -7.1361 7.2675 22 6 -0.7007 -7.2535 6.8494 23 6 -1.9240 -7.3121 7.4945 24 7 -2.8759 -7.4251 6.5598 25 1 -3.8272 -7.4862 6.7386 26 7 -2.2952 -7.4420 5.2861 27 6 -0.9905 -7.3346 5.4086 28 6 0.3176 -6.5819 0.7480 29 6 -0.3747 -5.3354 0.1832 30 1 -0.4849 0.8401 0.0004 31 1 -0.7193 -2.1617 0.6324 32 1 -0.5023 -2.9464 -0.9906 33 1 1.7490 -4.2463 -1.0006 34 1 2.5477 -4.0482 0.6180 35 1 0.9716 -3.1186 2.5055 36 1 -0.6081 -3.9345 2.6134 37 1 1.0104 -5.2714 3.8507 38 1 2.1401 -5.2581 2.4720 39 1 2.2621 -7.1581 4.3114 40 1 2.6629 -7.0159 6.7107 41 1 0.8675 -7.0701 8.3210 42 1 -2.0825 -7.2728 8.5621 43 1 -0.2707 -7.4674 0.5074 44 1 1.3140 -6.6739 0.3160 45 1 -1.4138 -5.3152 0.5119 46 1 -0.3375 -5.3588 -0.9059 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035761777.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:53 Heat of formation + Delta-G solvation = 129.027670 kcal Electronic energy + Delta-G solvation = -29626.322756 eV Core-core repulsion = 25712.724133 eV Total energy + Delta-G solvation = -3913.598623 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.48511 -40.20658 -38.70944 -37.01099 -35.62614 -32.68786 -32.24957 -31.37333 -30.59390 -30.25660 -29.04215 -26.86546 -25.10699 -24.69153 -23.58164 -23.12084 -22.04221 -21.92809 -20.82998 -19.35757 -18.43679 -17.71259 -17.16823 -16.64643 -16.38579 -16.04415 -15.27907 -15.24567 -14.93828 -14.79804 -14.52833 -14.24669 -13.78831 -13.69115 -13.58147 -13.38634 -12.93394 -12.56291 -12.29956 -12.23240 -12.13253 -11.91599 -11.81482 -11.58566 -11.04016 -10.97139 -10.83898 -10.77277 -10.72105 -10.50185 -10.34520 -10.19037 -9.67492 -9.61001 -9.52754 -9.13718 -9.04169 -8.76139 -8.31238 -7.83328 -6.82131 -5.72918 -3.04655 0.19627 1.58529 2.05437 2.38422 2.82812 3.16748 3.40365 3.45041 3.47201 3.62388 3.98595 4.23275 4.48617 4.61690 4.76784 4.94876 5.05583 5.09534 5.13064 5.16986 5.25771 5.37777 5.44835 5.45846 5.57504 5.67231 5.73571 5.78315 5.93452 5.96854 6.09421 6.09440 6.12861 6.26526 6.29711 6.36868 6.43766 6.55794 6.59304 6.68631 6.73700 6.77182 6.88595 6.92515 7.27918 7.34405 7.42167 7.59595 7.61845 8.01921 8.33348 9.07613 9.74372 10.70310 11.44485 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014706 B = 0.002909 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.515566 B = 9624.361516 C =10225.173404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.009 4.009 3 Si 0.910 3.090 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.215 4.215 8 H 0.079 0.921 9 N -0.608 5.608 10 C 0.166 3.834 11 C -0.115 4.115 12 C 0.128 3.872 13 C -0.093 4.093 14 C 0.105 3.895 15 N -0.599 5.599 16 C 0.565 3.435 17 O -0.537 6.537 18 C -0.105 4.105 19 C -0.037 4.037 20 C -0.163 4.163 21 C -0.021 4.021 22 C -0.215 4.215 23 C 0.090 3.910 24 N -0.428 5.428 25 H 0.445 0.555 26 N -0.284 5.284 27 C 0.134 3.866 28 C 0.116 3.884 29 C -0.114 4.114 30 H 0.252 0.748 31 H 0.069 0.931 32 H 0.023 0.977 33 H 0.030 0.970 34 H 0.036 0.964 35 H 0.088 0.912 36 H 0.059 0.941 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.135 0.865 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.191 0.809 43 H 0.087 0.913 44 H 0.068 0.932 45 H 0.063 0.937 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.751 -16.397 17.219 23.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.205 4.205 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.342 4.342 8 H 0.097 0.903 9 N -0.334 5.334 10 C 0.041 3.959 11 C -0.116 4.116 12 C 0.002 3.998 13 C -0.131 4.131 14 C -0.018 4.018 15 N -0.331 5.331 16 C 0.353 3.647 17 O -0.414 6.414 18 C -0.111 4.111 19 C -0.059 4.059 20 C -0.182 4.182 21 C -0.041 4.041 22 C -0.226 4.226 23 C -0.068 4.068 24 N -0.127 5.127 25 H 0.289 0.711 26 N -0.111 5.111 27 C -0.024 4.024 28 C -0.006 4.006 29 C -0.153 4.153 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.041 0.959 33 H 0.048 0.952 34 H 0.055 0.945 35 H 0.106 0.894 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.153 0.847 40 H 0.147 0.853 41 H 0.144 0.856 42 H 0.207 0.793 43 H 0.106 0.894 44 H 0.086 0.914 45 H 0.082 0.918 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.053 -16.612 16.087 23.216 hybrid contribution 0.533 1.158 0.520 1.377 sum -1.520 -15.454 16.607 22.736 Atomic orbital electron populations 1.69840 1.04975 1.25184 1.56647 1.24775 0.95636 0.97400 1.02696 0.86150 0.78618 0.83638 0.77544 1.21722 1.21699 1.20628 1.18918 0.90044 0.81571 1.43714 0.90276 1.45570 1.02691 0.99199 1.85917 1.22035 0.88712 0.89021 0.96173 1.22077 0.98699 0.95727 0.95090 1.22396 0.94491 0.86699 0.96254 1.21396 1.00815 0.96872 0.94026 1.21982 0.96550 0.84537 0.98712 1.48046 1.57139 1.21179 1.06781 1.17995 0.78789 0.82193 0.85674 1.90782 1.39529 1.34373 1.76745 1.19724 0.90810 1.09155 0.91456 1.21189 0.94944 0.93785 0.96023 1.20336 0.99509 1.06004 0.92393 1.20251 0.89673 0.94699 0.99520 1.19571 0.94209 1.16381 0.92390 1.22765 0.88244 0.99689 0.96081 1.46449 1.10052 1.51753 1.04475 0.71076 1.77717 1.07897 1.28184 0.97263 1.21501 0.90727 0.97587 0.92564 1.21629 1.01052 0.99344 0.78557 1.21723 0.99548 0.93685 1.00302 0.93754 0.91279 0.95901 0.95224 0.94538 0.89366 0.92247 0.89831 0.91086 0.84729 0.85337 0.85598 0.79253 0.89436 0.91369 0.91836 0.90792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.38 11.52 55.49 0.64 -26.75 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.22 -5.99 10.74 -15.06 -0.16 -6.15 16 8 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 9 N -0.61 -15.43 3.55 -184.65 -0.66 -16.08 16 10 C 0.17 3.93 6.54 -8.21 -0.05 3.87 16 11 C -0.11 -2.12 0.84 -155.01 -0.13 -2.25 16 12 C 0.13 2.57 7.63 -8.20 -0.06 2.51 16 13 C -0.09 -1.61 5.27 -26.78 -0.14 -1.75 16 14 C 0.10 1.47 5.51 -3.65 -0.02 1.45 16 15 N -0.60 -9.02 2.94 -173.98 -0.51 -9.53 16 16 C 0.57 9.32 7.21 -12.63 -0.09 9.23 16 17 O -0.54 -10.62 16.50 5.24 0.09 -10.53 16 18 C -0.11 -1.49 4.78 -102.74 -0.49 -1.98 16 19 C -0.04 -0.40 7.68 -39.20 -0.30 -0.70 16 20 C -0.16 -1.40 9.83 -40.19 -0.39 -1.80 16 21 C -0.02 -0.17 10.02 -39.46 -0.40 -0.57 16 22 C -0.22 -2.22 6.34 -105.21 -0.67 -2.89 16 23 C 0.09 0.63 12.08 -16.59 -0.20 0.43 16 24 N -0.43 -3.76 7.18 30.86 0.22 -3.53 16 25 H 0.44 2.16 8.96 -182.69 -1.64 0.52 16 26 N -0.28 -4.15 12.67 34.35 0.44 -3.71 16 27 C 0.13 1.91 7.49 -80.99 -0.61 1.30 16 28 C 0.12 1.71 6.35 -3.64 -0.02 1.69 16 29 C -0.11 -1.82 5.30 -26.77 -0.14 -1.96 16 30 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.07 1.83 7.11 -51.93 -0.37 1.46 16 32 H 0.02 0.56 8.09 -51.93 -0.42 0.14 16 33 H 0.03 0.59 8.06 -51.93 -0.42 0.17 16 34 H 0.04 0.69 7.53 -51.93 -0.39 0.30 16 35 H 0.09 1.72 7.95 -51.93 -0.41 1.30 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.08 1.07 5.27 -51.93 -0.27 0.80 16 38 H 0.07 0.92 7.60 -51.93 -0.39 0.53 16 39 H 0.13 1.22 7.74 -52.48 -0.41 0.81 16 40 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 42 H 0.19 0.36 8.06 -52.48 -0.42 -0.06 16 43 H 0.09 1.34 6.97 -51.93 -0.36 0.97 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.07 1.13 8.09 -51.93 -0.42 0.71 16 LS Contribution 372.47 15.07 5.61 5.61 Total: -1.00 -37.50 372.47 -10.76 -48.26 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -7.59 Total: -0.91 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -3.98 Total: 0.09 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: 0.13 Total: -59.61 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.53 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.50 -10.76 -48.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035761777.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.289 kcal (2) G-P(sol) polarization free energy of solvation -37.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds