Wall clock time and date at job start Tue Mar 31 2020 23:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86799 * 120.00273 * 2 1 4 4 H 1.48501 * 109.46756 * 270.00121 * 3 2 1 5 5 H 1.48504 * 109.47042 * 29.99654 * 3 2 1 6 6 H 1.48494 * 109.47280 * 149.99723 * 3 2 1 7 7 C 1.38814 * 119.99861 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99857 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00217 * 359.97438 * 7 2 1 10 10 C 1.47167 * 136.00401 * 180.02562 * 9 7 2 11 11 C 1.52954 * 87.85741 * 153.33715 * 10 9 7 12 12 C 1.47169 * 135.99885 * 359.97438 * 9 7 2 13 13 C 1.52560 * 114.06748 * 272.00865 * 11 10 9 14 14 C 1.53354 * 109.12935 * 284.44818 * 13 11 10 15 15 N 1.46890 * 108.74937 * 307.75768 * 14 13 11 16 16 C 1.34776 * 120.46704 * 235.60501 * 15 14 13 17 17 O 1.21596 * 120.00129 * 174.12840 * 16 15 14 18 18 C 1.47510 * 119.99623 * 354.12785 * 16 15 14 19 19 C 1.41042 * 119.39475 * 136.83617 * 18 16 15 20 20 C 1.35185 * 121.66017 * 180.02562 * 19 18 16 21 21 C 1.41384 * 119.93198 * 0.02562 * 20 19 18 22 22 N 1.31927 * 134.40173 * 179.97438 * 21 20 19 23 23 N 1.39911 * 109.06334 * 180.02562 * 22 21 20 24 24 H 0.97006 * 124.98696 * 180.02562 * 23 22 21 25 25 C 1.33816 * 110.03023 * 359.97438 * 23 22 21 26 26 C 1.38538 * 107.83706 * 0.02562 * 25 23 22 27 27 C 1.38224 * 119.39789 * 316.56984 * 18 16 15 28 28 C 1.46902 * 119.07089 * 55.62478 * 15 14 13 29 29 C 1.52553 * 114.06790 * 139.44012 * 11 10 9 30 30 H 0.96997 * 120.00016 * 0.02562 * 1 2 3 31 31 H 1.09004 * 113.48129 * 268.08312 * 10 9 7 32 32 H 1.08999 * 113.48979 * 38.58222 * 10 9 7 33 33 H 1.08999 * 113.49259 * 321.41317 * 12 9 7 34 34 H 1.08997 * 113.48590 * 91.91963 * 12 9 7 35 35 H 1.08994 * 109.52812 * 44.34581 * 13 11 10 36 36 H 1.08997 * 109.52815 * 164.55669 * 13 11 10 37 37 H 1.08995 * 109.59126 * 187.98187 * 14 13 11 38 38 H 1.09004 * 109.59244 * 67.53489 * 14 13 11 39 39 H 1.08001 * 119.16708 * 359.97438 * 19 18 16 40 40 H 1.08004 * 120.03856 * 180.02562 * 20 19 18 41 41 H 1.08002 * 126.07918 * 179.97438 * 25 23 22 42 42 H 1.08001 * 120.32492 * 359.97438 * 27 18 16 43 43 H 1.09005 * 109.58544 * 184.58581 * 28 15 14 44 44 H 1.09002 * 109.58864 * 64.14810 * 28 15 14 45 45 H 1.09003 * 109.53069 * 195.43936 * 29 11 10 46 46 H 1.09002 * 109.52234 * 315.57118 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 1.6815 -3.8160 0.0029 11 6 0.3422 -4.0903 0.6890 12 6 -0.0892 -2.7937 0.0029 13 6 0.3934 -4.0019 2.2112 14 6 1.0772 -5.2580 2.7648 15 7 0.4137 -6.4427 2.2045 16 6 -0.0964 -7.3888 3.0175 17 8 -0.7366 -8.3111 2.5504 18 6 0.1220 -7.3055 4.4740 19 6 -0.9497 -7.5728 5.3511 20 6 -0.8009 -7.5094 6.6932 21 6 0.4536 -7.1675 7.2485 22 7 0.9107 -7.0240 8.4777 23 7 2.2624 -6.6670 8.4239 24 1 2.8259 -6.5040 9.1965 25 6 2.6642 -6.5843 7.1501 26 6 1.5797 -6.8860 6.3426 27 6 1.3745 -6.9724 4.9543 28 6 0.3142 -6.5819 0.7455 29 6 -0.3754 -5.3355 0.1774 30 1 -0.4850 0.8400 -0.0004 31 1 1.7541 -4.2465 -0.9960 32 1 2.5448 -4.0480 0.6265 33 1 -0.7217 -2.1621 0.6266 34 1 -0.4983 -2.9461 -0.9959 35 1 0.9600 -3.1187 2.5060 36 1 -0.6201 -3.9347 2.6065 37 1 0.9925 -5.2714 3.8514 38 1 2.1288 -5.2582 2.4779 39 1 -1.9137 -7.8340 4.9401 40 1 -1.6394 -7.7196 7.3407 41 1 3.6571 -6.3272 6.8118 42 1 2.1863 -6.7752 4.2698 43 1 -0.2730 -7.4675 0.5021 44 1 1.3127 -6.6740 0.3182 45 1 -1.4160 -5.3153 0.5013 46 1 -0.3331 -5.3588 -0.9115 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035779508.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:57 Heat of formation + Delta-G solvation = 128.446895 kcal Electronic energy + Delta-G solvation = -29450.012034 eV Core-core repulsion = 25536.388227 eV Total energy + Delta-G solvation = -3913.623807 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.62730 -40.38240 -38.89451 -36.91345 -35.75107 -32.89592 -32.32515 -31.10941 -30.99323 -30.36794 -29.10312 -26.89946 -25.13769 -24.73386 -23.76773 -23.19418 -22.43966 -21.16031 -21.00526 -19.69692 -18.49237 -18.01640 -17.10433 -16.68843 -16.48516 -16.07114 -15.33251 -15.04190 -14.88212 -14.68020 -14.50959 -14.27059 -14.25892 -13.77991 -13.54231 -13.44101 -13.02740 -12.86098 -12.58287 -12.26601 -12.16420 -11.87599 -11.77483 -11.63089 -11.07716 -11.02544 -10.86864 -10.81773 -10.67343 -10.63368 -10.37180 -10.21651 -9.72001 -9.69015 -9.57523 -9.18747 -9.09600 -8.79790 -8.38855 -7.87402 -6.85907 -5.76378 -3.08282 0.22378 1.33875 2.05785 2.32980 2.81040 3.11217 3.37626 3.42273 3.44647 3.64477 3.93203 4.26955 4.45319 4.56070 4.71812 4.86661 5.02394 5.06578 5.11015 5.18427 5.26314 5.31238 5.39820 5.41378 5.53670 5.64560 5.69515 5.80960 5.87243 5.91384 6.02635 6.06877 6.12502 6.18529 6.27004 6.32950 6.38420 6.49907 6.54843 6.63418 6.67337 6.68154 6.83625 6.87207 7.23381 7.24111 7.38007 7.53164 7.58265 7.98456 8.25599 9.04137 9.70922 10.66504 11.40959 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012517 B = 0.003017 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.453892 B = 9277.413329 C =10792.170754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.217 4.217 8 H 0.079 0.921 9 N -0.608 5.608 10 C 0.128 3.872 11 C -0.114 4.114 12 C 0.166 3.834 13 C -0.094 4.094 14 C 0.100 3.900 15 N -0.599 5.599 16 C 0.562 3.438 17 O -0.546 6.546 18 C -0.158 4.158 19 C -0.032 4.032 20 C -0.112 4.112 21 C 0.119 3.881 22 N -0.311 5.311 23 N -0.423 5.423 24 H 0.445 0.555 25 C 0.101 3.899 26 C -0.218 4.218 27 C 0.003 3.997 28 C 0.116 3.884 29 C -0.114 4.114 30 H 0.253 0.747 31 H 0.030 0.970 32 H 0.036 0.964 33 H 0.069 0.931 34 H 0.023 0.977 35 H 0.088 0.912 36 H 0.061 0.939 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.193 0.807 42 H 0.135 0.865 43 H 0.088 0.912 44 H 0.067 0.933 45 H 0.064 0.936 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.460 -15.429 13.708 21.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.344 4.344 8 H 0.097 0.903 9 N -0.334 5.334 10 C 0.001 3.999 11 C -0.116 4.116 12 C 0.040 3.960 13 C -0.132 4.132 14 C -0.023 4.023 15 N -0.331 5.331 16 C 0.351 3.649 17 O -0.425 6.425 18 C -0.163 4.163 19 C -0.055 4.055 20 C -0.133 4.133 21 C -0.035 4.035 22 N -0.139 5.139 23 N -0.122 5.122 24 H 0.289 0.711 25 C -0.058 4.058 26 C -0.227 4.227 27 C -0.018 4.018 28 C -0.006 4.006 29 C -0.153 4.153 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.088 0.912 34 H 0.041 0.959 35 H 0.106 0.894 36 H 0.080 0.920 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.152 0.848 40 H 0.151 0.849 41 H 0.210 0.790 42 H 0.152 0.848 43 H 0.107 0.893 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.865 -15.577 14.748 21.796 hybrid contribution 1.117 1.294 -0.680 1.839 sum 4.982 -14.283 14.068 20.657 Atomic orbital electron populations 1.69825 1.04970 1.25252 1.56504 1.24769 0.95633 0.97397 1.02620 0.86158 0.78603 0.83653 0.77568 1.21693 1.21666 1.20667 1.18907 0.90027 0.81576 1.43893 0.90313 1.45586 1.02705 0.99170 1.85907 1.22394 0.94449 0.86755 0.96273 1.22065 0.98672 0.95749 0.95095 1.22033 0.88730 0.89015 0.96191 1.21415 1.00947 0.96832 0.94021 1.22156 0.96566 0.84656 0.98890 1.48040 1.57064 1.21194 1.06851 1.18248 0.78662 0.81938 0.86042 1.90760 1.40452 1.34444 1.76829 1.19481 0.94964 1.08650 0.93206 1.20544 0.98324 0.94698 0.91948 1.19733 0.93996 1.05156 0.94425 1.21058 0.95222 0.97239 0.89995 1.77663 0.89302 1.27848 1.19088 1.46333 1.09770 1.48696 1.07400 0.71067 1.22876 0.99603 0.98724 0.84620 1.19500 0.93610 1.14961 0.94657 1.20766 0.96288 0.92355 0.92408 1.21636 1.01104 0.99362 0.78535 1.21723 0.99574 0.93637 1.00336 0.93699 0.95258 0.94629 0.91226 0.95908 0.89395 0.92027 0.89380 0.91189 0.84755 0.84887 0.78997 0.84752 0.89349 0.91437 0.91745 0.90795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.89 11.51 55.49 0.64 -26.25 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 3 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.22 -5.91 10.74 -15.06 -0.16 -6.07 16 8 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 9 N -0.61 -15.01 3.55 -184.67 -0.66 -15.66 16 10 C 0.13 2.46 7.63 -8.21 -0.06 2.40 16 11 C -0.11 -2.00 0.84 -155.04 -0.13 -2.13 16 12 C 0.17 3.79 6.54 -8.23 -0.05 3.73 16 13 C -0.09 -1.51 5.27 -26.77 -0.14 -1.65 16 14 C 0.10 1.26 4.90 -3.65 -0.02 1.24 16 15 N -0.60 -8.05 2.94 -173.86 -0.51 -8.57 16 16 C 0.56 8.07 7.23 -12.48 -0.09 7.98 16 17 O -0.55 -9.47 16.34 5.28 0.09 -9.38 16 18 C -0.16 -1.94 5.04 -105.06 -0.53 -2.47 16 19 C -0.03 -0.37 9.47 -39.61 -0.38 -0.75 16 20 C -0.11 -1.23 10.05 -39.47 -0.40 -1.63 16 21 C 0.12 1.38 7.49 -82.97 -0.62 0.76 16 22 N -0.31 -3.44 12.69 33.31 0.42 -3.02 16 23 N -0.42 -2.90 7.17 30.87 0.22 -2.68 16 24 H 0.44 1.31 8.96 -182.73 -1.64 -0.33 16 25 C 0.10 0.65 12.09 -16.58 -0.20 0.45 16 26 C -0.22 -2.15 6.32 -105.23 -0.66 -2.82 16 27 C 0.00 0.03 7.40 -38.69 -0.29 -0.26 16 28 C 0.12 1.55 6.35 -3.64 -0.02 1.53 16 29 C -0.11 -1.68 5.30 -26.78 -0.14 -1.82 16 30 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 31 H 0.03 0.56 8.06 -51.93 -0.42 0.14 16 32 H 0.04 0.65 7.53 -51.93 -0.39 0.25 16 33 H 0.07 1.78 7.11 -51.93 -0.37 1.42 16 34 H 0.02 0.54 8.09 -51.93 -0.42 0.12 16 35 H 0.09 1.62 7.95 -51.93 -0.41 1.21 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.09 1.01 4.77 -51.93 -0.25 0.76 16 38 H 0.07 0.82 7.60 -51.93 -0.39 0.43 16 39 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 40 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 41 H 0.19 0.40 8.06 -52.49 -0.42 -0.03 16 42 H 0.13 1.14 6.84 -52.49 -0.36 0.78 16 43 H 0.09 1.22 6.97 -51.93 -0.36 0.86 16 44 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 LS Contribution 369.96 15.07 5.58 5.58 Total: -1.00 -35.42 369.96 -10.75 -46.17 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -7.52 Total: -1.08 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -3.99 Total: -1.82 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: 0.12 Total: -56.19 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.09 Total: -9.38 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.42 -10.75 -46.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035779508.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.616 kcal (2) G-P(sol) polarization free energy of solvation -35.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds