Wall clock time and date at job start Tue Mar 31 2020 23:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00181 * 2 1 4 4 H 1.48491 * 109.47089 * 270.00280 * 3 2 1 5 5 H 1.48498 * 109.46907 * 30.00616 * 3 2 1 6 6 H 1.48507 * 109.46816 * 149.99947 * 3 2 1 7 7 C 1.38817 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00268 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.47167 * 136.00009 * 359.63482 * 9 7 2 11 11 C 1.52938 * 87.85777 * 206.92018 * 10 9 7 12 12 C 1.47156 * 136.00392 * 179.97438 * 9 7 2 13 13 C 1.52556 * 114.11440 * 87.94830 * 11 10 9 14 14 C 1.53351 * 109.12827 * 190.31629 * 13 11 10 15 15 N 1.46880 * 108.75019 * 307.75497 * 14 13 11 16 16 C 1.34781 * 120.46414 * 235.64587 * 15 14 13 17 17 O 1.21666 * 120.00225 * 174.35920 * 16 15 14 18 18 C 1.46937 * 119.99652 * 354.35870 * 16 15 14 19 19 C 1.36468 * 126.72782 * 317.32500 * 18 16 15 20 20 N 1.35357 * 109.77549 * 179.97438 * 19 18 16 21 21 H 0.97001 * 124.82803 * 179.97438 * 20 19 18 22 22 C 1.37868 * 110.35126 * 359.97438 * 20 19 18 23 23 C 1.39215 * 133.47678 * 180.02562 * 22 20 19 24 24 C 1.38338 * 118.29619 * 179.97438 * 23 22 20 25 25 C 1.38598 * 119.64662 * 359.97438 * 24 23 22 26 26 N 1.31638 * 121.19023 * 0.02562 * 25 24 23 27 27 C 1.32694 * 121.42317 * 359.72004 * 26 25 24 28 28 C 1.46889 * 119.07444 * 55.62628 * 15 14 13 29 29 C 1.52557 * 114.11693 * 220.61329 * 11 10 9 30 30 H 0.97000 * 120.00135 * 359.97438 * 1 2 3 31 31 H 1.09004 * 113.48370 * 321.66640 * 10 9 7 32 32 H 1.08996 * 113.49460 * 92.16859 * 10 9 7 33 33 H 1.09005 * 113.48947 * 267.83177 * 12 9 7 34 34 H 1.09004 * 113.48659 * 38.33580 * 12 9 7 35 35 H 1.09000 * 109.52539 * 310.20988 * 13 11 10 36 36 H 1.09000 * 109.52946 * 70.41808 * 13 11 10 37 37 H 1.09006 * 109.59421 * 187.97393 * 14 13 11 38 38 H 1.09003 * 109.58847 * 67.53572 * 14 13 11 39 39 H 1.08003 * 125.11551 * 359.97438 * 19 18 16 40 40 H 1.08001 * 120.85710 * 359.97438 * 23 22 20 41 41 H 1.08004 * 120.17669 * 180.02562 * 24 23 22 42 42 H 1.07998 * 119.40530 * 179.97438 * 25 24 23 43 43 H 1.08999 * 109.59123 * 184.58551 * 28 15 14 44 44 H 1.09007 * 109.59461 * 64.14642 * 28 15 14 45 45 H 1.09002 * 109.52702 * 289.56570 * 29 11 10 46 46 H 1.08991 * 109.52736 * 49.71019 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5478 1.4400 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.0891 -2.7938 0.0064 11 6 0.3455 -4.0903 0.6914 12 6 1.6814 -3.8160 -0.0015 13 6 0.4038 -4.0019 2.2133 14 6 1.0902 -5.2580 2.7636 15 7 0.4241 -6.4426 2.2064 16 6 -0.0828 -7.3884 3.0219 17 8 -0.7219 -8.3135 2.5572 18 6 0.1364 -7.3022 4.4723 19 6 1.3000 -6.9707 5.1035 20 7 1.1171 -6.9966 6.4444 21 1 1.8026 -6.7964 7.1010 22 6 -0.1818 -7.3478 6.7444 23 6 -0.8770 -7.5166 7.9388 24 6 -2.2094 -7.8832 7.8758 25 6 -2.8114 -8.0704 6.6415 26 7 -2.1377 -7.9061 5.5225 27 6 -0.8594 -7.5501 5.5305 28 6 0.3178 -6.5818 0.7480 29 6 -0.3745 -5.3355 0.1831 30 1 -0.4850 0.8400 0.0004 31 1 -0.7191 -2.1618 0.6324 32 1 -0.5022 -2.9465 -0.9906 33 1 1.7490 -4.2463 -1.0007 34 1 2.5479 -4.0481 0.6179 35 1 0.9717 -3.1187 2.5055 36 1 -0.6079 -3.9346 2.6134 37 1 1.0107 -5.2714 3.8507 38 1 2.1404 -5.2580 2.4719 39 1 2.2275 -6.7246 4.6077 40 1 -0.3887 -7.3652 8.8901 41 1 -2.7778 -8.0220 8.7836 42 1 -3.8517 -8.3570 6.5969 43 1 -0.2704 -7.4674 0.5074 44 1 1.3143 -6.6739 0.3160 45 1 -1.4135 -5.3153 0.5120 46 1 -0.3373 -5.3588 -0.9059 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035835358.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:18 Heat of formation + Delta-G solvation = 105.024015 kcal Electronic energy + Delta-G solvation = -29505.760802 eV Core-core repulsion = 25591.121303 eV Total energy + Delta-G solvation = -3914.639499 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.97572 -40.06932 -38.57895 -38.04199 -35.59877 -33.14216 -32.48639 -31.36427 -30.40828 -30.19897 -29.48972 -26.88607 -24.90869 -24.18190 -24.07610 -23.18074 -22.67017 -22.31259 -20.86895 -19.37119 -18.42342 -17.35923 -17.17610 -16.66597 -16.51394 -16.17067 -15.60560 -15.29633 -14.91166 -14.85979 -14.61612 -14.52823 -13.78491 -13.59850 -13.53002 -13.39056 -13.24153 -12.90022 -12.80876 -12.50262 -12.40167 -12.11871 -12.07494 -11.59926 -11.05611 -10.99266 -10.84316 -10.77144 -10.55113 -10.36360 -10.20059 -9.76531 -9.69288 -9.53725 -9.41538 -9.14997 -8.78800 -8.74803 -8.42613 -8.22062 -6.84167 -5.74901 -3.06796 0.64404 1.08428 1.88844 2.56616 2.98051 3.34697 3.38291 3.42849 3.45235 3.78311 3.98631 4.33906 4.46448 4.51352 4.66570 4.72411 4.95841 5.04058 5.10769 5.13491 5.23763 5.26796 5.36833 5.43159 5.46117 5.60880 5.67243 5.73428 5.82990 5.89926 5.93927 5.96710 6.08726 6.10811 6.25649 6.35330 6.43431 6.57185 6.59127 6.66372 6.73582 6.87206 6.90846 6.95159 7.26451 7.40494 7.60243 7.63487 7.92933 7.99960 8.43218 9.05512 9.72270 10.68321 11.42409 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015780 B = 0.002770 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.025694 B =10107.345152 C =10843.450288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.008 4.008 3 Si 0.910 3.090 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.216 4.216 8 H 0.079 0.921 9 N -0.609 5.609 10 C 0.166 3.834 11 C -0.114 4.114 12 C 0.128 3.872 13 C -0.094 4.094 14 C 0.103 3.897 15 N -0.603 5.603 16 C 0.591 3.409 17 O -0.534 6.534 18 C -0.203 4.203 19 C 0.117 3.883 20 N -0.575 5.575 21 H 0.423 0.577 22 C 0.035 3.965 23 C -0.078 4.078 24 C -0.160 4.160 25 C 0.098 3.902 26 N -0.438 5.438 27 C 0.136 3.864 28 C 0.118 3.882 29 C -0.114 4.114 30 H 0.253 0.747 31 H 0.069 0.931 32 H 0.024 0.976 33 H 0.030 0.970 34 H 0.035 0.965 35 H 0.086 0.914 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.189 0.811 40 H 0.134 0.866 41 H 0.140 0.860 42 H 0.160 0.840 43 H 0.088 0.912 44 H 0.066 0.934 45 H 0.064 0.936 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.485 -16.272 16.702 23.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.343 4.343 8 H 0.097 0.903 9 N -0.334 5.334 10 C 0.040 3.960 11 C -0.115 4.115 12 C 0.002 3.998 13 C -0.132 4.132 14 C -0.019 4.019 15 N -0.336 5.336 16 C 0.379 3.621 17 O -0.411 6.411 18 C -0.215 4.215 19 C -0.016 4.016 20 N -0.177 5.177 21 H 0.261 0.739 22 C -0.073 4.073 23 C -0.107 4.107 24 C -0.181 4.181 25 C -0.069 4.069 26 N -0.146 5.146 27 C 0.002 3.998 28 C -0.004 4.004 29 C -0.153 4.153 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.041 0.959 33 H 0.048 0.952 34 H 0.054 0.946 35 H 0.105 0.895 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.206 0.794 40 H 0.151 0.849 41 H 0.158 0.842 42 H 0.177 0.823 43 H 0.106 0.894 44 H 0.085 0.915 45 H 0.083 0.917 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.910 -16.475 15.668 22.754 hybrid contribution 1.240 1.389 0.957 2.094 sum 2.150 -15.086 16.625 22.552 Atomic orbital electron populations 1.69832 1.04962 1.25228 1.56528 1.24777 0.95633 0.97396 1.02675 0.86157 0.78579 0.83671 0.77572 1.21687 1.21687 1.20687 1.18906 0.90015 0.81583 1.43840 0.90318 1.45580 1.02725 0.99190 1.85934 1.22039 0.88674 0.89039 0.96219 1.22061 0.98647 0.95778 0.95016 1.22395 0.94460 0.86708 0.96270 1.21395 1.00890 0.96743 0.94140 1.22006 0.96495 0.84954 0.98473 1.47971 1.57738 1.21179 1.06743 1.17142 0.78655 0.81923 0.84388 1.90781 1.39616 1.34197 1.76462 1.19889 0.93007 1.15675 0.92910 1.22245 0.99492 0.97623 0.82264 1.41347 1.09930 1.59376 1.07032 0.73917 1.19077 0.86013 1.05518 0.96657 1.20499 0.94298 1.00584 0.95329 1.21887 0.94516 1.01844 0.99829 1.22738 1.00004 0.97219 0.86912 1.67086 1.06422 1.09947 1.31128 1.19465 0.90201 0.99893 0.90237 1.21599 1.00942 0.99341 0.78516 1.21729 0.99628 0.93668 1.00299 0.93710 0.91272 0.95862 0.95216 0.94648 0.89508 0.92112 0.90104 0.91267 0.79379 0.84851 0.84190 0.82330 0.89364 0.91526 0.91742 0.90821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.16 11.52 55.49 0.64 -26.53 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 3 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.22 -5.95 10.74 -15.06 -0.16 -6.11 16 8 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 9 N -0.61 -15.23 3.55 -184.71 -0.66 -15.89 16 10 C 0.17 3.87 6.54 -8.23 -0.05 3.81 16 11 C -0.11 -2.05 0.84 -155.01 -0.13 -2.18 16 12 C 0.13 2.52 7.63 -8.22 -0.06 2.45 16 13 C -0.09 -1.56 5.27 -26.78 -0.14 -1.70 16 14 C 0.10 1.33 5.48 -3.65 -0.02 1.31 16 15 N -0.60 -8.67 2.94 -174.08 -0.51 -9.18 16 16 C 0.59 9.50 7.58 -12.74 -0.10 9.41 16 17 O -0.53 -10.54 16.51 5.22 0.09 -10.45 16 18 C -0.20 -2.75 5.31 -103.28 -0.55 -3.30 16 19 C 0.12 1.04 9.45 -16.63 -0.16 0.88 16 20 N -0.57 -4.21 5.98 -10.46 -0.06 -4.27 16 21 H 0.42 1.44 8.96 -40.82 -0.37 1.08 16 22 C 0.04 0.36 7.27 -83.94 -0.61 -0.25 16 23 C -0.08 -0.63 10.19 -39.18 -0.40 -1.03 16 24 C -0.16 -1.27 10.09 -39.41 -0.40 -1.67 16 25 C 0.10 1.04 11.16 -17.50 -0.20 0.85 16 26 N -0.44 -6.59 10.41 -9.70 -0.10 -6.69 16 27 C 0.14 1.93 7.51 -82.91 -0.62 1.30 16 28 C 0.12 1.69 6.35 -3.65 -0.02 1.66 16 29 C -0.11 -1.79 5.30 -26.77 -0.14 -1.93 16 30 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.07 1.81 7.11 -51.93 -0.37 1.44 16 32 H 0.02 0.56 8.09 -51.93 -0.42 0.14 16 33 H 0.03 0.58 8.06 -51.93 -0.42 0.16 16 34 H 0.04 0.65 7.53 -51.93 -0.39 0.26 16 35 H 0.09 1.63 7.95 -51.93 -0.41 1.22 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.08 0.90 4.79 -51.93 -0.25 0.65 16 38 H 0.07 0.81 7.60 -51.93 -0.39 0.41 16 39 H 0.19 1.05 7.42 -52.48 -0.39 0.66 16 40 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 41 H 0.14 0.64 8.06 -52.48 -0.42 0.22 16 42 H 0.16 1.24 8.06 -52.49 -0.42 0.81 16 43 H 0.09 1.32 6.97 -51.93 -0.36 0.96 16 44 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 46 H 0.07 1.10 8.09 -51.93 -0.42 0.68 16 LS Contribution 371.33 15.07 5.60 5.60 Total: -1.00 -37.35 371.33 -10.17 -47.51 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -6.28 Total: -0.19 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: -3.86 Total: 3.20 kcal Atomic # 7 Polarization: -61.86 SS G_CDS: -0.69 Total: -62.55 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.45 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -37.35 -10.17 -47.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035835358.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.538 kcal (2) G-P(sol) polarization free energy of solvation -37.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds