Wall clock time and date at job start Tue Mar 31 2020 23:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99911 * 2 1 4 4 H 1.48499 * 109.47171 * 264.98928 * 3 2 1 5 5 H 1.48495 * 109.47049 * 24.98891 * 3 2 1 6 6 H 1.48501 * 109.47202 * 144.99312 * 3 2 1 7 7 C 1.38817 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00174 * 186.81442 * 7 2 1 9 9 N 1.36934 * 120.00087 * 6.81909 * 7 2 1 10 10 C 1.48255 * 126.39431 * 4.63512 * 9 7 2 11 11 C 1.55291 * 106.99802 * 184.94375 * 10 9 7 12 12 C 1.53751 * 101.87149 * 22.48995 * 11 10 9 13 13 H 1.09000 * 111.30428 * 79.82164 * 12 11 10 14 14 C 1.52233 * 114.74272 * 207.22225 * 12 11 10 15 15 N 1.47715 * 106.36660 * 169.57849 * 14 12 11 16 16 C 1.34781 * 119.68656 * 127.93532 * 15 14 12 17 17 O 1.21644 * 120.00127 * 180.32358 * 16 15 14 18 18 C 1.47277 * 119.99692 * 0.32813 * 16 15 14 19 19 C 1.38442 * 120.02816 * 203.13100 * 18 16 15 20 20 C 1.40649 * 118.27152 * 179.97438 * 19 18 16 21 21 C 1.38258 * 133.40252 * 179.97438 * 20 19 18 22 22 C 1.39682 * 106.99677 * 180.02562 * 21 20 19 23 23 C 1.35647 * 108.08309 * 0.02562 * 22 21 20 24 24 N 1.35913 * 109.05922 * 359.97438 * 23 22 21 25 25 C 1.36902 * 132.42397 * 180.02562 * 24 23 22 26 26 N 1.29798 * 121.47884 * 179.73779 * 25 24 23 27 27 C 1.46601 * 120.63415 * 307.96627 * 15 14 12 28 28 C 1.53954 * 110.57307 * 47.79789 * 27 15 14 29 29 C 1.45467 * 126.40761 * 184.66930 * 9 7 2 30 30 H 1.08999 * 108.77429 * 265.95761 * 29 9 7 31 31 H 0.96996 * 120.00567 * 359.97438 * 1 2 3 32 32 H 1.09006 * 109.94886 * 65.60806 * 10 9 7 33 33 H 1.09004 * 109.94045 * 304.27583 * 10 9 7 34 34 H 1.09004 * 110.95525 * 264.33813 * 11 10 9 35 35 H 1.08998 * 110.95716 * 140.64152 * 11 10 9 36 36 H 1.09004 * 110.07068 * 288.78772 * 14 12 11 37 37 H 1.08998 * 110.06868 * 50.36672 * 14 12 11 38 38 H 1.08004 * 120.86055 * 0.02562 * 19 18 16 39 39 H 1.07992 * 126.50220 * 0.02562 * 21 20 19 40 40 H 1.08002 * 125.95788 * 179.97438 * 22 21 20 41 41 H 1.07994 * 125.47043 * 180.02562 * 23 22 21 42 42 H 1.08004 * 119.26429 * 0.02562 * 25 24 23 43 43 H 1.08991 * 109.25837 * 168.08555 * 27 15 14 44 44 H 1.09002 * 109.25103 * 287.51830 * 27 15 14 45 45 H 1.08994 * 109.88157 * 68.41412 * 28 27 15 46 46 H 1.09001 * 109.87818 * 189.49071 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.6035 1.9853 -1.3947 5 1 1.3986 2.6809 0.5914 6 1 3.4908 1.4731 0.8032 7 6 2.0103 -1.2022 0.0005 8 1 3.0845 -1.2055 0.1115 9 7 1.3329 -2.3840 -0.1397 10 6 -0.1188 -2.5406 -0.3965 11 6 -0.4267 -4.0620 -0.3485 12 6 0.7457 -4.5956 0.4909 13 1 0.5775 -4.4319 1.5553 14 6 1.1241 -6.0430 0.2093 15 7 2.4029 -6.2826 0.9087 16 6 2.5220 -7.3373 1.7393 17 8 3.5706 -7.5367 2.3228 18 6 1.3826 -8.2486 1.9404 19 6 1.3022 -9.0138 3.0913 20 6 0.1979 -9.8711 3.2455 21 6 -0.1899 -10.7516 4.2384 22 6 -1.3933 -11.3282 3.8257 23 6 -1.7172 -10.8065 2.6162 24 7 -0.7593 -9.9161 2.2460 25 6 -0.6100 -9.1282 1.1365 26 7 0.4079 -8.3343 1.0009 27 6 3.5436 -5.3837 0.7087 28 6 3.1037 -3.9141 0.8390 29 6 1.9029 -3.7201 -0.0640 30 1 2.1525 -4.0527 -1.0716 31 1 -0.4851 0.8400 0.0004 32 1 -0.3677 -2.1423 -1.3802 33 1 -0.6906 -2.0216 0.3728 34 1 -0.4176 -4.4933 -1.3495 35 1 -1.3789 -4.2516 0.1470 36 1 0.3554 -6.7126 0.5954 37 1 1.2499 -6.1949 -0.8627 38 1 2.0671 -8.9533 3.8514 39 1 0.3376 -10.9550 5.1586 40 1 -1.9657 -12.0622 4.3736 41 1 -2.5956 -11.0575 2.0403 42 1 -1.3583 -9.1647 0.3585 43 1 4.3061 -5.5985 1.4572 44 1 3.9602 -5.5475 -0.2852 45 1 2.8294 -3.6996 1.8719 46 1 3.9136 -3.2556 0.5252 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036749175.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:49 Heat of formation + Delta-G solvation = 106.603538 kcal Electronic energy + Delta-G solvation = -29712.885461 eV Core-core repulsion = 25798.314455 eV Total energy + Delta-G solvation = -3914.571006 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.72120 -40.30343 -38.43919 -37.60717 -35.26754 -33.47680 -32.54176 -32.00939 -31.15765 -29.62268 -28.68827 -27.95630 -25.23419 -24.68063 -23.97006 -22.94569 -22.09533 -21.43444 -20.21676 -19.94293 -19.33695 -18.59541 -17.38183 -16.72912 -16.21502 -16.16372 -15.90773 -15.41990 -15.09513 -14.90246 -14.66321 -14.35830 -14.11915 -13.76858 -13.22514 -13.17709 -13.02240 -12.85710 -12.78229 -12.68032 -12.49201 -12.08720 -11.68164 -11.50869 -11.38422 -10.92756 -10.81803 -10.79259 -10.59931 -10.43615 -10.13827 -10.11842 -9.88992 -9.82116 -9.59986 -9.38550 -9.02291 -8.63556 -8.48776 -7.82699 -6.81176 -5.68300 -3.04254 0.15063 0.82664 2.19837 2.48842 2.57981 3.00013 3.37400 3.40973 3.46076 3.47388 3.71515 4.19332 4.26086 4.46764 4.51030 4.82898 4.84075 5.06286 5.10444 5.16921 5.32140 5.35013 5.42220 5.47051 5.56988 5.66535 5.71876 5.76763 5.85698 5.90755 5.94623 6.16241 6.19131 6.23295 6.26224 6.31017 6.36204 6.44334 6.51567 6.63862 6.69527 6.75799 6.91746 7.11036 7.26543 7.46784 7.52625 7.66602 7.82326 8.17496 8.27475 9.20334 9.84637 10.52820 11.41430 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020460 B = 0.002735 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.209511 B =10233.406989 C =10966.687404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.224 4.224 8 H 0.078 0.922 9 N -0.594 5.594 10 C 0.170 3.830 11 C -0.132 4.132 12 C -0.127 4.127 13 H 0.075 0.925 14 C 0.100 3.900 15 N -0.585 5.585 16 C 0.574 3.426 17 O -0.546 6.546 18 C 0.016 3.984 19 C -0.042 4.042 20 C 0.027 3.973 21 C -0.172 4.172 22 C -0.147 4.147 23 C -0.028 4.028 24 N -0.387 5.387 25 C 0.301 3.699 26 N -0.453 5.453 27 C 0.114 3.886 28 C -0.127 4.127 29 C 0.167 3.833 30 H 0.021 0.979 31 H 0.251 0.749 32 H 0.027 0.973 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.128 0.872 37 H 0.068 0.932 38 H 0.161 0.839 39 H 0.151 0.849 40 H 0.152 0.848 41 H 0.177 0.823 42 H 0.209 0.791 43 H 0.088 0.912 44 H 0.064 0.936 45 H 0.066 0.934 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.704 -23.510 3.820 24.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.352 4.352 8 H 0.096 0.904 9 N -0.319 5.319 10 C 0.045 3.955 11 C -0.171 4.171 12 C -0.147 4.147 13 H 0.094 0.906 14 C -0.022 4.022 15 N -0.315 5.315 16 C 0.361 3.639 17 O -0.425 6.425 18 C -0.101 4.101 19 C -0.064 4.064 20 C -0.077 4.077 21 C -0.198 4.198 22 C -0.169 4.169 23 C -0.159 4.159 24 N -0.059 5.059 25 C 0.020 3.980 26 N -0.167 5.167 27 C -0.008 4.008 28 C -0.166 4.166 29 C 0.058 3.942 30 H 0.038 0.962 31 H 0.062 0.938 32 H 0.046 0.954 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.145 0.855 37 H 0.086 0.914 38 H 0.179 0.821 39 H 0.169 0.831 40 H 0.169 0.831 41 H 0.194 0.806 42 H 0.226 0.774 43 H 0.106 0.894 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.925 -22.584 3.204 23.146 hybrid contribution 0.203 0.594 0.530 0.821 sum -3.722 -21.990 3.733 22.613 Atomic orbital electron populations 1.69917 1.04915 1.24974 1.57039 1.24789 0.95637 0.97646 1.02457 0.86173 0.78601 0.83588 0.77634 1.21624 1.21776 1.20754 1.18995 0.90771 0.82554 1.42880 0.90432 1.44267 1.04418 0.99513 1.83662 1.21647 0.84947 0.88700 1.00157 1.22663 0.96549 0.99535 0.98373 1.22684 0.97942 0.93892 1.00187 0.90636 1.22701 0.85035 0.97457 0.97013 1.48157 1.14670 1.25449 1.43183 1.17489 0.86072 0.80908 0.79461 1.90798 1.28360 1.73965 1.49387 1.20822 0.95513 1.00786 0.92935 1.21617 0.95566 0.91580 0.97648 1.18880 0.92811 1.03889 0.92159 1.21166 0.98736 1.00190 0.99706 1.21066 0.97627 1.02544 0.95701 1.22004 0.96454 0.97773 0.99655 1.43169 1.18453 1.28995 1.15331 1.25049 0.97513 0.87236 0.88178 1.68421 1.02045 1.16928 1.29287 1.21706 0.87797 0.89477 1.01858 1.21870 0.99858 0.93547 1.01356 1.20682 0.91495 0.87023 0.94977 0.96205 0.93816 0.95445 0.91382 0.92415 0.92288 0.85529 0.91351 0.82106 0.83101 0.83055 0.80604 0.77436 0.89356 0.91747 0.91507 0.90546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.02 10.52 55.49 0.58 -26.44 16 2 C -0.01 -0.26 5.46 -17.43 -0.10 -0.35 16 3 Si 0.91 22.21 29.56 -169.99 -5.02 17.19 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.22 -6.17 9.84 -15.06 -0.15 -6.32 16 8 H 0.08 2.07 7.28 -52.49 -0.38 1.68 16 9 N -0.59 -14.99 3.35 -163.03 -0.55 -15.54 16 10 C 0.17 4.07 5.57 -1.86 -0.01 4.06 16 11 C -0.13 -2.40 6.53 -25.13 -0.16 -2.57 16 12 C -0.13 -2.26 2.85 -89.37 -0.26 -2.52 16 13 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 14 C 0.10 1.49 5.41 -3.77 -0.02 1.47 16 15 N -0.58 -9.30 3.00 -173.81 -0.52 -9.82 16 16 C 0.57 9.24 7.56 -12.58 -0.10 9.14 16 17 O -0.55 -9.97 15.90 5.24 0.08 -9.89 16 18 C 0.02 0.22 6.41 -82.43 -0.53 -0.31 16 19 C -0.04 -0.50 9.71 -38.60 -0.37 -0.88 16 20 C 0.03 0.29 6.78 -83.95 -0.57 -0.28 16 21 C -0.17 -1.48 10.98 -39.03 -0.43 -1.91 16 22 C -0.15 -1.01 10.80 -39.97 -0.43 -1.44 16 23 C -0.03 -0.18 11.61 -16.67 -0.19 -0.38 16 24 N -0.39 -3.43 2.95 -62.17 -0.18 -3.61 16 25 C 0.30 2.53 12.16 -89.23 -1.09 1.44 16 26 N -0.45 -5.22 6.40 -10.42 -0.07 -5.28 16 27 C 0.11 1.83 6.33 -3.49 -0.02 1.81 16 28 C -0.13 -2.35 5.50 -27.00 -0.15 -2.50 16 29 C 0.17 3.41 2.55 -68.00 -0.17 3.24 16 30 H 0.02 0.43 7.94 -51.93 -0.41 0.01 16 31 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.03 0.71 8.09 -51.93 -0.42 0.29 16 33 H 0.07 1.83 6.78 -51.93 -0.35 1.48 16 34 H 0.06 0.96 8.12 -51.93 -0.42 0.53 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.13 1.74 4.06 -77.18 -0.31 1.43 16 37 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 38 H 0.16 1.79 7.83 -52.48 -0.41 1.38 16 39 H 0.15 1.03 8.06 -52.49 -0.42 0.60 16 40 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 41 H 0.18 0.54 8.06 -52.49 -0.42 0.12 16 42 H 0.21 0.81 8.06 -52.48 -0.42 0.39 16 43 H 0.09 1.43 6.94 -51.93 -0.36 1.07 16 44 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.07 1.33 8.13 -51.93 -0.42 0.90 16 46 H 0.08 1.42 7.64 -51.93 -0.40 1.02 16 LS Contribution 364.92 15.07 5.50 5.50 Total: -1.00 -33.90 364.92 -11.33 -45.23 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -6.41 Total: 0.96 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: -4.74 Total: 1.71 kcal Atomic # 7 Polarization: -59.96 SS G_CDS: -0.73 Total: -60.69 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.08 Total: -9.89 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.90 -11.33 -45.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036749175.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.832 kcal (2) G-P(sol) polarization free energy of solvation -33.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds