Wall clock time and date at job start Tue Mar 31 2020 23:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99940 * 2 1 4 4 H 1.48501 * 109.46927 * 270.00234 * 3 2 1 5 5 H 1.48497 * 109.46749 * 30.00200 * 3 2 1 6 6 H 1.48497 * 109.46760 * 150.00252 * 3 2 1 7 7 C 1.38812 * 119.99868 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99887 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00167 * 359.97438 * 7 2 1 10 10 C 1.47425 * 126.05411 * 0.02562 * 9 7 2 11 11 C 1.54506 * 107.15065 * 181.57410 * 10 9 7 12 12 C 1.55513 * 102.19448 * 23.34171 * 11 10 9 13 13 H 1.08996 * 112.35929 * 202.10575 * 12 11 10 14 14 C 1.52734 * 106.81258 * 77.70144 * 12 11 10 15 15 N 1.46524 * 110.46901 * 202.66985 * 14 12 11 16 16 C 1.34776 * 121.01495 * 235.56216 * 15 14 12 17 17 O 1.21647 * 119.99800 * 358.76468 * 16 15 14 18 18 C 1.47272 * 120.00517 * 179.04054 * 16 15 14 19 19 C 1.38441 * 120.03540 * 203.76922 * 18 16 15 20 20 C 1.40651 * 118.27348 * 179.76079 * 19 18 16 21 21 C 1.38257 * 133.40201 * 180.19564 * 20 19 18 22 22 C 1.39675 * 107.00067 * 180.28139 * 21 20 19 23 23 C 1.35653 * 108.07855 * 0.02562 * 22 21 20 24 24 N 1.35909 * 109.06121 * 359.97438 * 23 22 21 25 25 C 1.36903 * 132.42871 * 180.02562 * 24 23 22 26 26 N 1.29789 * 121.48489 * 179.97438 * 25 24 23 27 27 C 1.47146 * 117.97604 * 55.28787 * 15 14 12 28 28 C 1.53047 * 107.68704 * 302.83410 * 27 15 14 29 29 C 1.46463 * 126.05246 * 179.97438 * 9 7 2 30 30 H 1.08998 * 108.34652 * 269.16790 * 29 9 7 31 31 H 0.97000 * 120.00045 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.90746 * 300.95905 * 10 9 7 33 33 H 1.09001 * 109.90411 * 62.01654 * 10 9 7 34 34 H 1.08996 * 110.77770 * 141.11495 * 11 10 9 35 35 H 1.09006 * 110.77906 * 264.54876 * 11 10 9 36 36 H 1.09000 * 109.25212 * 82.33888 * 14 12 11 37 37 H 1.09004 * 109.18253 * 322.94507 * 14 12 11 38 38 H 1.08001 * 120.85830 * 359.97438 * 19 18 16 39 39 H 1.08003 * 126.49786 * 0.26538 * 21 20 19 40 40 H 1.07995 * 125.96057 * 180.02562 * 22 21 20 41 41 H 1.08000 * 125.46504 * 180.02562 * 23 22 21 42 42 H 1.08007 * 119.25250 * 359.95690 * 25 24 23 43 43 H 1.09000 * 109.81225 * 62.37570 * 27 15 14 44 44 H 1.08993 * 109.82014 * 183.28485 * 27 15 14 45 45 H 1.08999 * 109.14941 * 174.81653 * 28 27 15 46 46 H 1.09002 * 109.14830 * 293.97946 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1404 -2.5436 -0.0005 11 6 -0.4379 -4.0592 0.0400 12 6 0.8667 -4.6334 0.6620 13 1 1.0098 -5.6877 0.4252 14 6 0.7959 -4.3642 2.1637 15 7 2.1395 -4.3638 2.7482 16 6 2.4492 -5.1764 3.7778 17 8 1.6010 -5.9091 4.2508 18 6 3.8126 -5.1730 4.3345 19 6 4.2869 -6.2826 5.0130 20 6 5.5963 -6.2412 5.5249 21 6 6.3696 -7.1446 6.2300 22 6 7.6007 -6.5295 6.4688 23 6 7.5647 -5.2891 5.9208 24 7 6.3511 -5.0951 5.3407 25 6 5.8099 -4.0357 4.6632 26 7 4.6030 -4.0802 4.1879 27 6 3.1423 -3.4536 2.1727 28 6 3.2669 -3.7811 0.6828 29 6 1.9201 -3.7266 -0.0016 30 1 2.0448 -4.0458 -1.0363 31 1 -0.4850 0.8400 0.0004 32 1 -0.5651 -2.0585 0.8783 33 1 -0.5602 -2.1045 -0.9056 34 1 -1.2926 -4.2684 0.6832 35 1 -0.6044 -4.4477 -0.9648 36 1 0.1951 -5.1391 2.6399 37 1 0.3287 -3.3938 2.3320 38 1 3.6686 -7.1586 5.1428 39 1 6.0772 -8.1376 6.5381 40 1 8.4355 -6.9653 6.9973 41 1 8.3714 -4.5713 5.9415 42 1 6.4006 -3.1426 4.5213 43 1 2.8185 -2.4204 2.2980 44 1 4.1029 -3.6030 2.6654 45 1 3.9359 -3.0602 0.2130 46 1 3.6847 -4.7816 0.5704 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036749176.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:53 Heat of formation + Delta-G solvation = 105.436552 kcal Electronic energy + Delta-G solvation = -30198.134962 eV Core-core repulsion = 26283.513352 eV Total energy + Delta-G solvation = -3914.621610 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.64221 -40.16582 -38.48363 -37.44044 -34.94690 -33.38414 -32.75180 -31.57264 -31.26976 -29.47496 -28.62774 -27.46969 -25.44350 -24.68738 -24.09104 -22.84895 -22.42195 -21.45510 -20.16278 -19.90511 -18.83464 -18.18569 -17.24624 -16.40261 -16.36023 -16.04449 -15.77381 -15.36109 -15.10314 -14.81309 -14.58572 -14.44875 -13.91842 -13.75669 -13.25291 -12.99891 -12.89648 -12.80628 -12.70149 -12.55099 -12.21187 -12.06189 -11.47643 -11.40513 -11.10968 -11.02145 -10.84336 -10.80585 -10.68356 -10.31566 -10.13257 -10.04732 -9.86185 -9.60940 -9.59768 -9.36632 -9.02946 -8.58709 -8.17548 -7.73446 -6.79697 -5.70114 -3.02466 0.24178 0.91829 2.27145 2.56520 2.68931 3.21550 3.39200 3.43765 3.46427 3.47767 3.85930 4.30810 4.37995 4.49717 4.54387 4.89458 4.95019 5.15973 5.22008 5.28496 5.36643 5.43631 5.46206 5.60143 5.62014 5.77254 5.84458 5.84874 5.93208 6.03597 6.13476 6.17460 6.26926 6.34210 6.40624 6.40925 6.48838 6.51366 6.68442 6.73753 6.83981 6.85730 6.96453 7.03980 7.39181 7.58121 7.62992 7.80713 7.83428 8.26429 8.36521 9.22342 9.84642 10.52510 11.42106 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014641 B = 0.003441 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.973129 B = 8135.890124 C = 9503.174726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.221 4.221 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.176 3.824 11 C -0.143 4.143 12 C -0.115 4.115 13 H 0.074 0.926 14 C 0.125 3.875 15 N -0.576 5.576 16 C 0.572 3.428 17 O -0.552 6.552 18 C 0.023 3.977 19 C -0.048 4.048 20 C 0.030 3.970 21 C -0.176 4.176 22 C -0.147 4.147 23 C -0.030 4.030 24 N -0.387 5.387 25 C 0.301 3.699 26 N -0.450 5.450 27 C 0.087 3.913 28 C -0.129 4.129 29 C 0.170 3.830 30 H 0.016 0.984 31 H 0.251 0.749 32 H 0.047 0.953 33 H 0.042 0.958 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.161 0.839 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.176 0.824 42 H 0.209 0.791 43 H 0.087 0.913 44 H 0.124 0.876 45 H 0.073 0.927 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.844 -12.188 10.165 21.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.349 4.349 8 H 0.096 0.904 9 N -0.319 5.319 10 C 0.051 3.949 11 C -0.182 4.182 12 C -0.136 4.136 13 H 0.093 0.907 14 C 0.003 3.997 15 N -0.304 5.304 16 C 0.359 3.641 17 O -0.431 6.431 18 C -0.094 4.094 19 C -0.070 4.070 20 C -0.075 4.075 21 C -0.202 4.202 22 C -0.170 4.170 23 C -0.161 4.161 24 N -0.059 5.059 25 C 0.020 3.980 26 N -0.163 5.163 27 C -0.035 4.035 28 C -0.168 4.168 29 C 0.062 3.938 30 H 0.034 0.966 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.178 0.822 39 H 0.168 0.832 40 H 0.169 0.831 41 H 0.193 0.807 42 H 0.225 0.775 43 H 0.105 0.895 44 H 0.140 0.860 45 H 0.091 0.909 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 12.730 -11.452 9.799 19.729 hybrid contribution 0.778 0.460 0.168 0.919 sum 13.508 -10.992 9.967 20.066 Atomic orbital electron populations 1.69955 1.04840 1.24904 1.57130 1.24767 0.95629 0.97492 1.02523 0.86191 0.78609 0.83918 0.77481 1.21779 1.21830 1.20715 1.18952 0.90353 0.82192 1.43451 0.90389 1.44323 1.01456 0.99406 1.86732 1.21246 0.84348 0.88280 1.00988 1.23051 0.95921 0.99747 0.99444 1.22558 0.97946 0.98465 0.94615 0.90726 1.21493 0.82556 1.03077 0.92558 1.47924 1.13442 1.37777 1.31281 1.17407 0.85583 0.80509 0.80575 1.90786 1.48492 1.42440 1.61399 1.20908 0.95365 0.90955 1.02176 1.21593 0.92272 0.99555 0.93572 1.18888 0.93042 0.88802 1.06785 1.21135 0.94110 1.00026 1.04880 1.21043 0.98566 0.94052 1.03316 1.21989 0.88137 1.00627 1.05377 1.43197 1.12946 1.12796 1.36985 1.25090 0.91802 0.90739 0.90389 1.68380 1.03285 1.26058 1.18565 1.22762 0.93527 0.94238 0.92953 1.21623 0.98828 1.00207 0.96155 1.20288 0.90973 0.87076 0.95461 0.96628 0.93849 0.93528 0.93982 0.92017 0.92227 0.90285 0.90058 0.82169 0.83179 0.83140 0.80683 0.77450 0.89477 0.85961 0.90865 0.93360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.47 10.38 55.49 0.58 -25.90 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 3 Si 0.91 21.58 29.55 -169.99 -5.02 16.56 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 7 C -0.22 -5.79 8.94 -15.06 -0.13 -5.92 16 8 H 0.08 1.96 6.71 -52.49 -0.35 1.61 16 9 N -0.59 -14.30 3.08 -164.47 -0.51 -14.80 16 10 C 0.18 4.16 4.62 -2.75 -0.01 4.15 16 11 C -0.14 -2.67 6.32 -24.60 -0.16 -2.83 16 12 C -0.12 -2.10 3.78 -88.89 -0.34 -2.44 16 13 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 14 C 0.13 2.35 5.43 -4.16 -0.02 2.33 16 15 N -0.58 -10.47 2.94 -174.60 -0.51 -10.99 16 16 C 0.57 10.19 7.59 -12.59 -0.10 10.10 16 17 O -0.55 -10.93 16.01 5.24 0.08 -10.85 16 18 C 0.02 0.35 6.45 -82.43 -0.53 -0.19 16 19 C -0.05 -0.61 9.72 -38.60 -0.37 -0.99 16 20 C 0.03 0.34 6.78 -83.95 -0.57 -0.23 16 21 C -0.18 -1.62 10.98 -39.04 -0.43 -2.05 16 22 C -0.15 -1.11 10.80 -39.97 -0.43 -1.54 16 23 C -0.03 -0.23 11.61 -16.67 -0.19 -0.42 16 24 N -0.39 -3.82 2.95 -62.17 -0.18 -4.00 16 25 C 0.30 2.97 12.16 -89.23 -1.09 1.88 16 26 N -0.45 -6.00 6.50 -10.42 -0.07 -6.07 16 27 C 0.09 1.54 5.97 -3.67 -0.02 1.52 16 28 C -0.13 -2.31 5.18 -27.63 -0.14 -2.45 16 29 C 0.17 3.43 2.89 -68.34 -0.20 3.23 16 30 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.05 1.22 6.94 -51.93 -0.36 0.86 16 33 H 0.04 1.11 7.56 -51.93 -0.39 0.72 16 34 H 0.06 1.05 7.97 -51.93 -0.41 0.64 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.08 1.46 7.00 -51.93 -0.36 1.09 16 37 H 0.08 1.72 6.73 -51.93 -0.35 1.37 16 38 H 0.16 1.90 7.84 -52.49 -0.41 1.49 16 39 H 0.15 1.10 8.06 -52.48 -0.42 0.67 16 40 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 41 H 0.18 0.69 8.06 -52.49 -0.42 0.27 16 42 H 0.21 1.16 8.06 -52.48 -0.42 0.74 16 43 H 0.09 1.81 7.39 -51.93 -0.38 1.43 16 44 H 0.12 1.94 3.93 -77.29 -0.30 1.64 16 45 H 0.07 1.33 7.05 -51.93 -0.37 0.97 16 46 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 359.66 15.07 5.42 5.42 Total: -1.00 -32.54 359.66 -11.26 -43.79 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -6.21 Total: 2.99 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: -4.83 Total: 3.84 kcal Atomic # 7 Polarization: -61.07 SS G_CDS: -0.70 Total: -61.76 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.08 Total: -10.85 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.54 -11.26 -43.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036749176.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.231 kcal (2) G-P(sol) polarization free energy of solvation -32.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds