Wall clock time and date at job start Tue Mar 31 2020 23:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 120.00050 * 2 1 4 4 H 1.48502 * 109.47367 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47289 * 300.00235 * 3 2 1 6 6 H 1.48501 * 109.47504 * 60.00118 * 3 2 1 7 7 C 1.38811 * 119.99935 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00446 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99898 * 0.02562 * 7 2 1 10 10 C 1.48164 * 126.40406 * 0.02562 * 9 7 2 11 11 C 1.55291 * 107.03985 * 175.08001 * 10 9 7 12 12 C 1.53748 * 101.84367 * 337.52197 * 11 10 9 13 13 H 1.08996 * 111.30989 * 280.15017 * 12 11 10 14 14 C 1.52244 * 114.73814 * 152.75333 * 12 11 10 15 15 N 1.47718 * 106.36243 * 190.43034 * 14 12 11 16 16 C 1.34777 * 119.68175 * 232.03139 * 15 14 12 17 17 O 1.21651 * 119.99987 * 172.80285 * 16 15 14 18 18 C 1.47276 * 119.99924 * 352.81032 * 16 15 14 19 19 C 1.38437 * 120.03019 * 164.17213 * 18 16 15 20 20 C 1.40658 * 118.27238 * 180.02562 * 19 18 16 21 21 C 1.38256 * 133.40112 * 180.02562 * 20 19 18 22 22 C 1.39675 * 106.99554 * 179.97438 * 21 20 19 23 23 C 1.35642 * 108.08467 * 359.97438 * 22 21 20 24 24 N 1.35909 * 109.06021 * 359.97438 * 23 22 21 25 25 C 1.36905 * 132.42874 * 179.97438 * 24 23 22 26 26 N 1.29794 * 121.47666 * 179.68497 * 25 24 23 27 27 C 1.46591 * 120.63710 * 52.05781 * 15 14 12 28 28 C 1.53953 * 110.57656 * 312.17436 * 27 15 14 29 29 C 1.45468 * 126.40661 * 179.70992 * 9 7 2 30 30 H 1.09002 * 109.26171 * 93.79909 * 29 9 7 31 31 H 0.97000 * 119.99792 * 359.97438 * 1 2 3 32 32 H 1.08994 * 109.92176 * 294.42558 * 10 9 7 33 33 H 1.08992 * 109.91838 * 55.73334 * 10 9 7 34 34 H 1.09000 * 110.95831 * 95.65907 * 11 10 9 35 35 H 1.09000 * 110.95708 * 219.38437 * 11 10 9 36 36 H 1.08994 * 110.06971 * 309.64041 * 14 12 11 37 37 H 1.08996 * 110.07105 * 71.21933 * 14 12 11 38 38 H 1.08011 * 120.86454 * 0.02562 * 19 18 16 39 39 H 1.08001 * 126.49961 * 0.02562 * 21 20 19 40 40 H 1.08005 * 125.95977 * 179.97438 * 22 21 20 41 41 H 1.08004 * 125.47533 * 179.97438 * 23 22 21 42 42 H 1.07994 * 119.26223 * 0.04302 * 25 24 23 43 43 H 1.09001 * 109.25951 * 72.45361 * 27 15 14 44 44 H 1.09007 * 109.25660 * 191.92784 * 27 15 14 45 45 H 1.09004 * 109.88415 * 170.51367 * 28 27 15 46 46 H 1.09005 * 109.88382 * 291.52351 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.1469 -2.5533 -0.0005 11 6 -0.4340 -4.0741 -0.1274 12 6 0.8689 -4.5896 -0.7602 13 1 0.8866 -4.4074 -1.8347 14 6 1.2011 -6.0408 -0.4420 15 7 2.5831 -6.2644 -0.9133 16 6 2.8504 -7.3042 -1.7281 17 8 3.9549 -7.4197 -2.2246 18 6 1.8051 -8.3006 -2.0174 19 6 1.9527 -9.1695 -3.0850 20 6 0.9317 -10.1059 -3.3279 21 6 0.7561 -11.0949 -4.2780 22 6 -0.4696 -11.7077 -4.0077 23 6 -1.0135 -11.1012 -2.9232 24 7 -0.1735 -10.1228 -2.4940 25 6 -0.2473 -9.2309 -1.4580 26 7 0.7004 -8.3729 -1.2336 27 6 3.6668 -5.3666 -0.5030 28 6 3.2483 -3.8959 -0.6825 29 6 1.9077 -3.7211 -0.0049 30 1 1.9932 -4.0803 1.0207 31 1 -0.4850 0.8401 0.0004 32 1 -0.5639 -2.1732 0.9320 33 1 -0.5796 -2.0217 -0.8480 34 1 -0.5959 -4.5234 0.8524 35 1 -1.2850 -4.2568 -0.7837 36 1 1.1403 -6.2115 0.6328 37 1 0.5148 -6.7054 -0.9668 38 1 2.8292 -9.1295 -3.7149 39 1 1.4378 -11.3464 -5.0770 40 1 -0.9080 -12.5223 -4.5652 41 1 -1.9618 -11.3551 -2.4728 42 1 -1.1107 -9.2453 -0.8094 43 1 3.9056 -5.5469 0.5452 44 1 4.5487 -5.5657 -1.1120 45 1 3.9879 -3.2411 -0.2216 46 1 3.1572 -3.6633 -1.7435 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036749177.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:57 Heat of formation + Delta-G solvation = 106.467291 kcal Electronic energy + Delta-G solvation = -29671.233177 eV Core-core repulsion = 25756.656262 eV Total energy + Delta-G solvation = -3914.576914 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.72754 -40.30995 -38.45874 -37.60467 -35.27515 -33.47839 -32.54599 -32.02466 -31.15775 -29.62197 -28.69319 -27.95762 -25.24075 -24.67204 -23.97141 -22.95097 -22.10642 -21.44295 -20.22139 -19.94345 -19.34680 -18.59096 -17.35965 -16.72630 -16.20659 -16.16854 -15.91229 -15.41143 -15.08642 -14.91996 -14.66769 -14.36018 -14.13467 -13.76906 -13.22439 -13.17717 -13.02140 -12.87070 -12.78932 -12.64788 -12.49351 -12.10052 -11.70984 -11.48304 -11.36940 -10.92856 -10.82152 -10.80732 -10.59388 -10.44021 -10.14780 -10.07973 -9.89533 -9.82174 -9.60073 -9.39609 -9.04652 -8.61274 -8.47783 -7.83704 -6.81433 -5.70409 -3.02969 0.13338 0.81915 2.19219 2.47875 2.57130 3.00740 3.40445 3.41236 3.46356 3.48400 3.69026 4.18971 4.25446 4.45813 4.50976 4.81904 4.84012 5.06669 5.10212 5.16278 5.31563 5.33712 5.42894 5.47390 5.58066 5.65780 5.70962 5.76267 5.85363 5.91319 5.94627 6.15883 6.18614 6.22980 6.27117 6.30349 6.35151 6.45371 6.51749 6.64530 6.69386 6.74746 6.91794 7.10931 7.26441 7.50411 7.57591 7.62642 7.82184 8.17250 8.25910 9.21349 9.84796 10.52916 11.42345 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022013 B = 0.002678 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.643774 B =10451.428684 C =11219.773503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.010 4.010 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.223 4.223 8 H 0.079 0.921 9 N -0.595 5.595 10 C 0.177 3.823 11 C -0.133 4.133 12 C -0.127 4.127 13 H 0.075 0.925 14 C 0.107 3.893 15 N -0.586 5.586 16 C 0.574 3.426 17 O -0.546 6.546 18 C 0.014 3.986 19 C -0.040 4.040 20 C 0.026 3.974 21 C -0.172 4.172 22 C -0.147 4.147 23 C -0.027 4.027 24 N -0.387 5.387 25 C 0.301 3.699 26 N -0.453 5.453 27 C 0.114 3.886 28 C -0.128 4.128 29 C 0.168 3.832 30 H 0.018 0.982 31 H 0.251 0.749 32 H 0.038 0.962 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.124 0.876 38 H 0.162 0.838 39 H 0.151 0.849 40 H 0.152 0.848 41 H 0.177 0.823 42 H 0.209 0.791 43 H 0.064 0.936 44 H 0.088 0.912 45 H 0.076 0.924 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.455 -24.266 -4.626 24.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.206 4.206 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.351 4.351 8 H 0.097 0.903 9 N -0.319 5.319 10 C 0.053 3.947 11 C -0.172 4.172 12 C -0.148 4.148 13 H 0.093 0.907 14 C -0.015 4.015 15 N -0.316 5.316 16 C 0.361 3.639 17 O -0.425 6.425 18 C -0.103 4.103 19 C -0.063 4.063 20 C -0.078 4.078 21 C -0.198 4.198 22 C -0.170 4.170 23 C -0.159 4.159 24 N -0.060 5.060 25 C 0.020 3.980 26 N -0.166 5.166 27 C -0.008 4.008 28 C -0.167 4.167 29 C 0.059 3.941 30 H 0.036 0.964 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.140 0.860 38 H 0.180 0.820 39 H 0.169 0.831 40 H 0.169 0.831 41 H 0.194 0.806 42 H 0.226 0.774 43 H 0.082 0.918 44 H 0.107 0.893 45 H 0.095 0.905 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.823 -23.216 -3.974 23.722 hybrid contribution 0.307 0.520 -0.540 0.810 sum -2.516 -22.696 -4.514 23.277 Atomic orbital electron populations 1.69951 1.04872 1.24845 1.57357 1.24786 0.95693 0.97617 1.02475 0.86076 0.78764 0.83949 0.77193 1.20517 1.21845 1.21809 1.19060 0.90420 0.82326 1.43273 0.90332 1.44227 1.01653 0.99513 1.86525 1.21521 0.83985 0.88316 1.00880 1.22687 0.95615 0.99687 0.99236 1.22630 0.97794 0.93976 1.00354 0.90665 1.22583 0.81400 0.97106 1.00393 1.48129 1.10526 1.26334 1.46614 1.17488 0.86224 0.81126 0.79069 1.90795 1.23160 1.76428 1.52106 1.20835 0.94142 0.99560 0.95730 1.21649 0.97501 0.90835 0.96266 1.18890 0.90065 1.02289 0.96594 1.21169 0.99576 0.98017 1.00996 1.21064 0.95994 1.02000 0.97923 1.22009 0.98494 0.94288 1.01060 1.43183 1.16699 1.24560 1.21518 1.25057 0.99408 0.85461 0.88099 1.68514 1.01657 1.18398 1.28080 1.21704 0.89630 0.89539 0.99947 1.21834 0.99307 0.93642 1.01963 1.20512 0.91230 0.87116 0.95214 0.96449 0.93873 0.94382 0.92855 0.92297 0.92292 0.91355 0.85957 0.82027 0.83098 0.83055 0.80603 0.77447 0.91752 0.89322 0.90534 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.12 10.44 55.49 0.58 -26.54 16 2 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 3 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.22 -6.14 9.88 -15.06 -0.15 -6.29 16 8 H 0.08 2.10 7.21 -52.49 -0.38 1.72 16 9 N -0.59 -15.02 3.35 -163.47 -0.55 -15.57 16 10 C 0.18 4.26 5.45 -1.91 -0.01 4.25 16 11 C -0.13 -2.42 6.54 -25.13 -0.16 -2.59 16 12 C -0.13 -2.27 2.85 -89.54 -0.26 -2.52 16 13 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 14 C 0.11 1.59 5.25 -3.76 -0.02 1.57 16 15 N -0.59 -9.29 3.00 -173.81 -0.52 -9.81 16 16 C 0.57 9.19 7.57 -12.59 -0.10 9.09 16 17 O -0.55 -9.92 15.78 5.23 0.08 -9.84 16 18 C 0.01 0.19 6.45 -82.43 -0.53 -0.34 16 19 C -0.04 -0.48 9.71 -38.60 -0.37 -0.85 16 20 C 0.03 0.27 6.78 -83.95 -0.57 -0.30 16 21 C -0.17 -1.46 10.98 -39.04 -0.43 -1.88 16 22 C -0.15 -0.99 10.80 -39.97 -0.43 -1.43 16 23 C -0.03 -0.18 11.61 -16.67 -0.19 -0.37 16 24 N -0.39 -3.38 2.95 -62.17 -0.18 -3.57 16 25 C 0.30 2.50 12.16 -89.23 -1.09 1.41 16 26 N -0.45 -5.17 6.34 -10.43 -0.07 -5.23 16 27 C 0.11 1.83 6.34 -3.50 -0.02 1.81 16 28 C -0.13 -2.37 5.48 -27.13 -0.15 -2.52 16 29 C 0.17 3.44 2.55 -68.30 -0.17 3.27 16 30 H 0.02 0.38 7.89 -51.93 -0.41 -0.03 16 31 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.04 1.00 7.77 -51.93 -0.40 0.60 16 33 H 0.05 1.43 7.21 -51.93 -0.37 1.05 16 34 H 0.06 0.98 8.11 -51.93 -0.42 0.56 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 0.99 8.07 -51.93 -0.42 0.57 16 37 H 0.12 1.67 4.28 -70.74 -0.30 1.37 16 38 H 0.16 1.79 7.74 -52.48 -0.41 1.38 16 39 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.15 0.63 8.06 -52.48 -0.42 0.21 16 41 H 0.18 0.52 8.06 -52.48 -0.42 0.10 16 42 H 0.21 0.80 8.06 -52.49 -0.42 0.38 16 43 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 44 H 0.09 1.43 6.92 -51.92 -0.36 1.07 16 45 H 0.08 1.43 7.62 -51.93 -0.40 1.03 16 46 H 0.07 1.31 8.13 -51.93 -0.42 0.88 16 LS Contribution 364.58 15.07 5.49 5.49 Total: -1.00 -33.96 364.58 -11.32 -45.29 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -6.39 Total: 0.61 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -4.75 Total: 1.94 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: -0.74 Total: -60.72 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.08 Total: -9.84 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.96 -11.32 -45.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036749177.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.755 kcal (2) G-P(sol) polarization free energy of solvation -33.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds