Wall clock time and date at job start Tue Mar 31 2020 23:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 120.00376 * 2 1 4 4 H 1.48498 * 109.47354 * 270.00358 * 3 2 1 5 5 H 1.48506 * 109.46719 * 30.00136 * 3 2 1 6 6 H 1.48497 * 109.46908 * 149.99790 * 3 2 1 7 7 C 1.38814 * 119.99946 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00205 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99646 * 359.97438 * 7 2 1 10 10 C 1.47654 * 126.20206 * 359.97438 * 9 7 2 11 11 C 1.54647 * 106.94003 * 178.34082 * 10 9 7 12 12 C 1.56262 * 102.20242 * 335.91374 * 11 10 9 13 13 H 1.09006 * 112.61113 * 158.91629 * 12 11 10 14 14 C 1.51871 * 106.82211 * 282.54950 * 12 11 10 15 15 N 1.43518 * 116.04231 * 130.06848 * 14 12 11 16 16 C 1.34784 * 115.76081 * 180.56830 * 15 14 12 17 17 O 1.21646 * 119.99967 * 0.02562 * 16 15 14 18 18 C 1.47274 * 119.99665 * 179.97438 * 16 15 14 19 19 C 1.38444 * 120.02546 * 179.97438 * 18 16 15 20 20 C 1.40659 * 118.26543 * 179.97438 * 19 18 16 21 21 C 1.38263 * 133.39625 * 180.02562 * 20 19 18 22 22 C 1.39672 * 106.99672 * 180.02562 * 21 20 19 23 23 C 1.35649 * 108.08216 * 359.97438 * 22 21 20 24 24 N 1.35916 * 109.06130 * 0.02562 * 23 22 21 25 25 C 1.36900 * 132.42562 * 179.97438 * 24 23 22 26 26 N 1.29796 * 121.47602 * 179.72961 * 25 24 23 27 27 C 1.44218 * 128.47580 * 0.85379 * 15 14 12 28 28 C 1.51797 * 112.78076 * 5.69837 * 27 15 14 29 29 C 1.46666 * 126.19735 * 179.97438 * 9 7 2 30 30 H 1.09003 * 108.98018 * 90.77225 * 29 9 7 31 31 H 0.97001 * 119.99524 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.97001 * 58.96124 * 10 9 7 33 33 H 1.09008 * 109.99698 * 297.72827 * 10 9 7 34 34 H 1.09000 * 110.85165 * 217.73640 * 11 10 9 35 35 H 1.09001 * 110.85645 * 94.09757 * 11 10 9 36 36 H 1.09000 * 108.16296 * 8.35940 * 14 12 11 37 37 H 1.09000 * 108.16735 * 251.77836 * 14 12 11 38 38 H 1.07992 * 120.86534 * 0.02562 * 19 18 16 39 39 H 1.07998 * 126.50397 * 0.02813 * 21 20 19 40 40 H 1.08002 * 125.96400 * 179.97438 * 22 21 20 41 41 H 1.08005 * 125.46807 * 180.02562 * 23 22 21 42 42 H 1.07994 * 119.26254 * 0.02562 * 25 24 23 43 43 H 1.09000 * 108.82612 * 126.75572 * 27 15 14 44 44 H 1.08996 * 108.82865 * 245.06548 * 27 15 14 45 45 H 1.08999 * 109.09519 * 203.86731 * 28 27 15 46 46 H 1.09001 * 108.72037 * 85.13577 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1425 -2.5475 0.0005 11 6 -0.4308 -4.0662 -0.0428 12 6 0.8750 -4.6321 -0.6880 13 1 1.0229 -5.6909 -0.4751 14 6 0.7857 -4.3529 -2.1781 15 7 1.9326 -3.7268 -2.7718 16 6 1.8425 -3.4708 -4.0920 17 8 0.8329 -3.7686 -4.7018 18 6 2.9660 -2.8296 -4.7960 19 6 2.8743 -2.5668 -6.1522 20 6 3.9689 -1.9527 -6.7872 21 6 4.2121 -1.5570 -8.0895 22 6 5.4926 -0.9996 -8.1145 23 6 6.0025 -1.0598 -6.8589 24 7 5.0884 -1.6379 -6.0358 25 6 5.1042 -1.9300 -4.6984 26 7 4.0897 -2.4918 -4.1154 27 6 3.1710 -3.3409 -2.1415 28 6 3.2581 -3.7885 -0.6936 29 6 1.9173 -3.7300 -0.0016 30 1 2.0484 -4.0605 1.0288 31 1 -0.4849 0.8401 -0.0004 32 1 -0.5703 -2.0622 -0.8767 33 1 -0.5638 -2.1143 0.9078 34 1 -1.2970 -4.2790 -0.6693 35 1 -0.5707 -4.4635 0.9626 36 1 -0.0793 -3.7130 -2.3527 37 1 0.6110 -5.2986 -2.6912 38 1 1.9852 -2.8258 -6.7078 39 1 3.5395 -1.6593 -8.9283 40 1 5.9900 -0.5919 -8.9821 41 1 6.9783 -0.7053 -6.5612 42 1 5.9785 -1.6832 -4.1144 43 1 4.0001 -3.7778 -2.6981 44 1 3.2601 -2.2551 -2.1765 45 1 3.9595 -3.1447 -0.1630 46 1 3.6272 -4.8137 -0.6660 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036749178.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:00 Heat of formation + Delta-G solvation = 115.752762 kcal Electronic energy + Delta-G solvation = -30756.117452 eV Core-core repulsion = 26841.943186 eV Total energy + Delta-G solvation = -3914.174266 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.48302 -40.35850 -38.38202 -37.30078 -35.01993 -33.25279 -32.81174 -31.78533 -31.08747 -29.56532 -28.57269 -27.59493 -25.22193 -24.64794 -23.94141 -22.78230 -22.51049 -21.31664 -20.13413 -19.89676 -18.58259 -17.85365 -17.13944 -16.47115 -16.21958 -15.97384 -15.58579 -15.52370 -15.22040 -14.72089 -14.44158 -14.34985 -14.08023 -13.57686 -13.33210 -12.93822 -12.76333 -12.68899 -12.56916 -12.36744 -12.35689 -11.99198 -11.52542 -11.42210 -11.20278 -10.88328 -10.75887 -10.67312 -10.64127 -10.23816 -10.09310 -9.91619 -9.78789 -9.65630 -9.56907 -9.21058 -9.09150 -8.57885 -8.00982 -7.53277 -6.78883 -5.68192 -2.99925 0.38368 1.10290 2.43711 2.71576 2.85862 3.38324 3.39779 3.42595 3.45880 3.78555 3.95982 4.46417 4.50020 4.53045 4.68405 5.03066 5.10419 5.17286 5.28378 5.33159 5.34869 5.44404 5.56233 5.59901 5.62621 5.72955 5.81768 5.91936 6.01201 6.08453 6.09424 6.14486 6.34348 6.38518 6.42253 6.45754 6.55846 6.57783 6.65587 6.74156 6.85038 6.94598 7.00654 7.24566 7.57571 7.58269 7.64856 7.82475 7.84752 8.27314 8.54331 9.23224 9.85854 10.53978 11.44436 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011389 B = 0.004452 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2457.989594 B = 6287.768382 C = 7637.401101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.904 3.096 4 H -0.292 1.292 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.217 4.217 8 H 0.077 0.923 9 N -0.590 5.590 10 C 0.177 3.823 11 C -0.143 4.143 12 C -0.113 4.113 13 H 0.081 0.919 14 C 0.142 3.858 15 N -0.553 5.553 16 C 0.559 3.441 17 O -0.549 6.549 18 C 0.023 3.977 19 C -0.046 4.046 20 C 0.031 3.969 21 C -0.179 4.179 22 C -0.148 4.148 23 C -0.033 4.033 24 N -0.385 5.385 25 C 0.296 3.704 26 N -0.448 5.448 27 C 0.137 3.863 28 C -0.129 4.129 29 C 0.170 3.830 30 H 0.024 0.976 31 H 0.251 0.749 32 H 0.046 0.954 33 H 0.042 0.958 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.050 0.950 38 H 0.161 0.839 39 H 0.150 0.850 40 H 0.150 0.850 41 H 0.175 0.825 42 H 0.207 0.793 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.074 0.926 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.559 -6.910 -11.067 17.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.735 3.265 4 H -0.220 1.220 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.345 4.345 8 H 0.095 0.905 9 N -0.316 5.316 10 C 0.052 3.948 11 C -0.181 4.181 12 C -0.133 4.133 13 H 0.100 0.900 14 C 0.020 3.980 15 N -0.281 5.281 16 C 0.345 3.655 17 O -0.428 6.428 18 C -0.095 4.095 19 C -0.068 4.068 20 C -0.074 4.074 21 C -0.204 4.204 22 C -0.170 4.170 23 C -0.165 4.165 24 N -0.057 5.057 25 C 0.014 3.986 26 N -0.160 5.160 27 C 0.014 3.986 28 C -0.168 4.168 29 C 0.062 3.938 30 H 0.041 0.959 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.179 0.821 39 H 0.167 0.833 40 H 0.167 0.833 41 H 0.192 0.808 42 H 0.223 0.777 43 H 0.093 0.907 44 H 0.101 0.899 45 H 0.093 0.907 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.847 -7.135 -10.093 16.445 hybrid contribution 0.481 1.328 -0.677 1.567 sum 11.328 -5.807 -10.770 16.674 Atomic orbital electron populations 1.69943 1.04808 1.24808 1.57164 1.24738 0.95587 0.97376 1.02637 0.86236 0.78681 0.84182 0.77390 1.21952 1.21758 1.20724 1.18902 0.90211 0.82139 1.43249 0.90483 1.44356 1.01393 0.99225 1.86640 1.21298 0.84379 0.88198 1.00878 1.23334 0.95675 0.99782 0.99338 1.22448 0.98639 0.98667 0.93524 0.90034 1.20349 0.87711 0.96688 0.93300 1.46255 1.16699 1.57446 1.07720 1.17549 0.85670 0.79596 0.82647 1.90769 1.30629 1.54277 1.67161 1.20886 0.93541 1.03449 0.91650 1.21628 0.97312 0.94064 0.93811 1.18904 0.88796 1.07088 0.92591 1.21108 0.98410 1.06667 0.94254 1.21013 0.95676 1.03735 0.96612 1.21956 0.96712 1.07826 0.89973 1.43241 1.14189 1.39826 1.08487 1.25147 0.99173 0.94670 0.79602 1.69188 0.99961 1.12806 1.34073 1.21227 0.83379 1.01603 0.92355 1.21357 0.99380 1.00246 0.95819 1.20226 0.90812 0.87289 0.95457 0.95913 0.93896 0.93603 0.94013 0.91950 0.92229 0.91352 0.93210 0.82099 0.83271 0.83267 0.80822 0.77697 0.90723 0.89933 0.90709 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.16 10.41 55.49 0.58 -26.58 16 2 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 3 Si 0.90 22.15 29.55 -169.99 -5.02 17.13 16 4 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.22 -5.77 8.86 -15.06 -0.13 -5.90 16 8 H 0.08 1.97 6.89 -52.49 -0.36 1.61 16 9 N -0.59 -14.40 3.05 -164.16 -0.50 -14.90 16 10 C 0.18 4.29 4.82 -2.54 -0.01 4.27 16 11 C -0.14 -2.67 6.14 -24.11 -0.15 -2.82 16 12 C -0.11 -2.00 3.80 -88.93 -0.34 -2.33 16 13 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 14 C 0.14 2.70 4.61 -6.19 -0.03 2.68 16 15 N -0.55 -10.69 3.19 -180.54 -0.58 -11.26 16 16 C 0.56 10.99 7.48 -12.58 -0.09 10.90 16 17 O -0.55 -11.83 15.91 5.24 0.08 -11.75 16 18 C 0.02 0.38 6.60 -82.43 -0.54 -0.16 16 19 C -0.05 -0.69 9.72 -38.59 -0.38 -1.07 16 20 C 0.03 0.42 6.78 -83.95 -0.57 -0.15 16 21 C -0.18 -1.97 10.98 -39.04 -0.43 -2.40 16 22 C -0.15 -1.35 10.80 -39.97 -0.43 -1.79 16 23 C -0.03 -0.31 11.61 -16.67 -0.19 -0.50 16 24 N -0.39 -4.53 2.95 -62.17 -0.18 -4.71 16 25 C 0.30 3.44 12.16 -89.23 -1.09 2.36 16 26 N -0.45 -6.73 5.36 -10.43 -0.06 -6.79 16 27 C 0.14 2.44 4.15 -5.87 -0.02 2.42 16 28 C -0.13 -2.23 5.08 -28.35 -0.14 -2.38 16 29 C 0.17 3.37 2.93 -68.33 -0.20 3.17 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.05 1.26 7.13 -51.93 -0.37 0.89 16 33 H 0.04 1.12 7.59 -51.92 -0.39 0.72 16 34 H 0.06 1.08 7.81 -51.93 -0.41 0.68 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.49 6.56 -51.93 -0.34 1.15 16 37 H 0.05 0.88 8.04 -51.93 -0.42 0.46 16 38 H 0.16 2.29 7.66 -52.49 -0.40 1.88 16 39 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 40 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.17 0.96 8.06 -52.48 -0.42 0.54 16 42 H 0.21 1.48 8.06 -52.49 -0.42 1.05 16 43 H 0.08 1.19 6.16 -51.93 -0.32 0.87 16 44 H 0.08 1.70 6.44 -51.93 -0.33 1.36 16 45 H 0.07 1.30 7.36 -51.93 -0.38 0.92 16 46 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 358.52 15.07 5.40 5.40 Total: -1.00 -33.68 358.52 -11.37 -45.05 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -6.25 Total: 2.41 kcal Atomic # 6 Polarization: 10.85 SS G_CDS: -4.85 Total: 6.00 kcal Atomic # 7 Polarization: -63.50 SS G_CDS: -0.74 Total: -64.24 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.08 Total: -11.75 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.68 -11.37 -45.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036749178.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.799 kcal (2) G-P(sol) polarization free energy of solvation -33.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds