Wall clock time and date at job start Tue Mar 31 2020 23:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 120.00376 * 2 1 4 4 H 1.48498 * 109.47354 * 270.00358 * 3 2 1 5 5 H 1.48506 * 109.46719 * 30.00136 * 3 2 1 6 6 H 1.48497 * 109.46908 * 149.99790 * 3 2 1 7 7 C 1.38814 * 119.99946 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00205 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99646 * 359.97438 * 7 2 1 10 10 C 1.47654 * 126.20206 * 359.97438 * 9 7 2 11 11 C 1.54647 * 106.94003 * 178.34082 * 10 9 7 12 12 C 1.56262 * 102.20242 * 335.91374 * 11 10 9 13 13 H 1.09006 * 112.61113 * 158.91629 * 12 11 10 14 14 C 1.51871 * 106.82211 * 282.54950 * 12 11 10 15 15 N 1.43518 * 116.04231 * 130.06848 * 14 12 11 16 16 C 1.34784 * 115.76081 * 180.56830 * 15 14 12 17 17 O 1.21646 * 119.99967 * 0.02562 * 16 15 14 18 18 C 1.47274 * 119.99665 * 179.97438 * 16 15 14 19 19 C 1.38444 * 120.02546 * 179.97438 * 18 16 15 20 20 C 1.40659 * 118.26543 * 179.97438 * 19 18 16 21 21 C 1.38263 * 133.39625 * 180.02562 * 20 19 18 22 22 C 1.39672 * 106.99672 * 180.02562 * 21 20 19 23 23 C 1.35649 * 108.08216 * 359.97438 * 22 21 20 24 24 N 1.35916 * 109.06130 * 0.02562 * 23 22 21 25 25 C 1.36900 * 132.42562 * 179.97438 * 24 23 22 26 26 N 1.29796 * 121.47602 * 179.72961 * 25 24 23 27 27 C 1.44218 * 128.47580 * 0.85379 * 15 14 12 28 28 C 1.51797 * 112.78076 * 5.69837 * 27 15 14 29 29 C 1.46666 * 126.19735 * 179.97438 * 9 7 2 30 30 H 1.09003 * 108.98018 * 90.77225 * 29 9 7 31 31 H 0.97001 * 119.99524 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.97001 * 58.96124 * 10 9 7 33 33 H 1.09008 * 109.99698 * 297.72827 * 10 9 7 34 34 H 1.09000 * 110.85165 * 217.73640 * 11 10 9 35 35 H 1.09001 * 110.85645 * 94.09757 * 11 10 9 36 36 H 1.09000 * 108.16296 * 8.35940 * 14 12 11 37 37 H 1.09000 * 108.16735 * 251.77836 * 14 12 11 38 38 H 1.07992 * 120.86534 * 0.02562 * 19 18 16 39 39 H 1.07998 * 126.50397 * 0.02813 * 21 20 19 40 40 H 1.08002 * 125.96400 * 179.97438 * 22 21 20 41 41 H 1.08005 * 125.46807 * 180.02562 * 23 22 21 42 42 H 1.07994 * 119.26254 * 0.02562 * 25 24 23 43 43 H 1.09000 * 108.82612 * 126.75572 * 27 15 14 44 44 H 1.08996 * 108.82865 * 245.06548 * 27 15 14 45 45 H 1.08999 * 109.09519 * 203.86731 * 28 27 15 46 46 H 1.09001 * 108.72037 * 85.13577 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1425 -2.5475 0.0005 11 6 -0.4308 -4.0662 -0.0428 12 6 0.8750 -4.6321 -0.6880 13 1 1.0229 -5.6909 -0.4751 14 6 0.7857 -4.3529 -2.1781 15 7 1.9326 -3.7268 -2.7718 16 6 1.8425 -3.4708 -4.0920 17 8 0.8329 -3.7686 -4.7018 18 6 2.9660 -2.8296 -4.7960 19 6 2.8743 -2.5668 -6.1522 20 6 3.9689 -1.9527 -6.7872 21 6 4.2121 -1.5570 -8.0895 22 6 5.4926 -0.9996 -8.1145 23 6 6.0025 -1.0598 -6.8589 24 7 5.0884 -1.6379 -6.0358 25 6 5.1042 -1.9300 -4.6984 26 7 4.0897 -2.4918 -4.1154 27 6 3.1710 -3.3409 -2.1415 28 6 3.2581 -3.7885 -0.6936 29 6 1.9173 -3.7300 -0.0016 30 1 2.0484 -4.0605 1.0288 31 1 -0.4849 0.8401 -0.0004 32 1 -0.5703 -2.0622 -0.8767 33 1 -0.5638 -2.1143 0.9078 34 1 -1.2970 -4.2790 -0.6693 35 1 -0.5707 -4.4635 0.9626 36 1 -0.0793 -3.7130 -2.3527 37 1 0.6110 -5.2986 -2.6912 38 1 1.9852 -2.8258 -6.7078 39 1 3.5395 -1.6593 -8.9283 40 1 5.9900 -0.5919 -8.9821 41 1 6.9783 -0.7053 -6.5612 42 1 5.9785 -1.6832 -4.1144 43 1 4.0001 -3.7778 -2.6981 44 1 3.2601 -2.2551 -2.1765 45 1 3.9595 -3.1447 -0.1630 46 1 3.6272 -4.8137 -0.6660 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036749178.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:59 Heat of formation + Delta-G solvation = 97.083792 kcal Electronic energy + Delta-G solvation = -30756.927000 eV Core-core repulsion = 26841.943186 eV Total energy + Delta-G solvation = -3914.983813 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.36540 -41.79528 -39.87525 -38.40016 -36.60894 -34.73135 -34.15113 -33.39033 -32.02595 -31.29347 -29.86659 -29.02270 -26.87825 -26.03980 -25.14670 -24.15082 -23.85009 -22.18434 -21.85534 -21.19497 -19.69702 -19.40113 -18.43014 -18.10918 -17.54642 -17.29624 -16.76940 -16.76860 -16.48738 -16.34469 -15.90534 -15.71665 -15.24237 -15.10124 -14.89298 -14.41838 -14.09773 -13.93010 -13.66250 -13.56462 -13.43152 -13.30942 -13.17099 -13.00950 -12.92551 -12.76075 -12.43729 -12.20626 -12.03211 -11.68432 -11.64282 -11.54335 -11.42589 -11.39379 -11.20232 -10.68292 -10.47724 -9.91496 -9.46000 -8.81529 -8.51288 -7.79741 -5.11449 -0.66448 0.20862 1.40614 1.42343 1.50687 1.58640 1.63579 1.97185 2.05719 2.50121 2.61149 2.95580 3.39908 3.43337 3.55461 3.62409 3.78488 3.85330 3.90525 4.04388 4.07665 4.25592 4.28074 4.32784 4.46541 4.53200 4.57014 4.62635 4.63610 4.69272 4.79353 4.83105 5.02504 5.08842 5.15365 5.16368 5.19661 5.25508 5.39056 5.44562 5.51648 5.58400 5.66200 5.76139 5.78079 5.83665 6.21509 6.23025 6.32609 6.65398 7.09971 7.13172 7.84127 8.51747 9.32567 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011389 B = 0.004452 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2457.989594 B = 6287.768382 C = 7637.401101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.075 4.075 3 Si 0.964 3.036 4 H -0.299 1.299 5 H -0.302 1.302 6 H -0.258 1.258 7 C -0.204 4.204 8 H 0.090 0.910 9 N -0.607 5.607 10 C 0.186 3.814 11 C -0.130 4.130 12 C -0.097 4.097 13 H 0.128 0.872 14 C 0.144 3.856 15 N -0.561 5.561 16 C 0.548 3.452 17 O -0.586 6.586 18 C -0.016 4.016 19 C -0.042 4.042 20 C -0.015 4.015 21 C -0.167 4.167 22 C -0.155 4.155 23 C -0.006 4.006 24 N -0.397 5.397 25 C 0.309 3.691 26 N -0.477 5.477 27 C 0.147 3.853 28 C -0.126 4.126 29 C 0.159 3.841 30 H 0.034 0.966 31 H 0.239 0.761 32 H -0.004 1.004 33 H 0.004 0.996 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.027 0.973 37 H 0.064 0.936 38 H 0.152 0.848 39 H 0.162 0.838 40 H 0.183 0.817 41 H 0.219 0.781 42 H 0.252 0.748 43 H 0.099 0.901 44 H 0.051 0.949 45 H 0.074 0.926 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.977 -7.757 -11.892 21.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.267 4.267 3 Si 0.794 3.206 4 H -0.227 1.227 5 H -0.229 1.229 6 H -0.183 1.183 7 C -0.333 4.333 8 H 0.108 0.892 9 N -0.332 5.332 10 C 0.061 3.939 11 C -0.168 4.168 12 C -0.116 4.116 13 H 0.146 0.854 14 C 0.021 3.979 15 N -0.288 5.288 16 C 0.337 3.663 17 O -0.468 6.468 18 C -0.132 4.132 19 C -0.065 4.065 20 C -0.119 4.119 21 C -0.194 4.194 22 C -0.177 4.177 23 C -0.138 4.138 24 N -0.070 5.070 25 C 0.027 3.973 26 N -0.190 5.190 27 C 0.025 3.975 28 C -0.164 4.164 29 C 0.052 3.948 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.014 0.986 33 H 0.023 0.977 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.045 0.955 37 H 0.082 0.918 38 H 0.170 0.830 39 H 0.180 0.820 40 H 0.200 0.800 41 H 0.235 0.765 42 H 0.268 0.732 43 H 0.116 0.884 44 H 0.069 0.931 45 H 0.093 0.907 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 15.301 -8.029 -10.897 20.429 hybrid contribution -0.737 1.664 -0.644 1.931 sum 14.564 -6.365 -11.541 19.643 Atomic orbital electron populations 1.70197 1.06382 1.24432 1.59804 1.25530 0.96321 1.00703 1.04158 0.85261 0.78280 0.80247 0.76801 1.22669 1.22903 1.18258 1.19311 0.90899 0.83014 1.40117 0.89244 1.44612 1.01646 1.00750 1.86175 1.20983 0.84503 0.91643 0.96764 1.23206 0.96992 0.95462 1.01154 1.22507 0.96679 1.00638 0.91804 0.85408 1.20310 0.86628 0.96298 0.94632 1.46402 1.17090 1.57502 1.07817 1.18118 0.86201 0.79128 0.82855 1.90714 1.32265 1.55924 1.67924 1.20482 0.94142 1.06411 0.92142 1.21634 0.97841 0.93607 0.93390 1.18980 0.89440 1.09634 0.93834 1.21571 0.99461 1.04620 0.93705 1.21511 0.94793 1.03373 0.98005 1.22867 0.97251 1.04230 0.89406 1.43442 1.14291 1.40581 1.08679 1.25954 0.99107 0.92315 0.79904 1.68991 1.00257 1.15018 1.34711 1.21197 0.83454 0.99846 0.93036 1.21366 0.97698 1.02572 0.94801 1.20531 0.92609 0.85088 0.96541 0.94835 0.95208 0.98562 0.97733 0.90937 0.89870 0.95475 0.91829 0.83015 0.82012 0.79974 0.76478 0.73204 0.88366 0.93121 0.90708 0.89087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.09 10.41 21.65 0.23 -59.87 16 2 C -0.08 -4.36 5.49 84.86 0.47 -3.89 16 3 Si 0.96 46.79 29.55 68.60 2.03 48.82 16 4 H -0.30 -14.64 7.11 99.48 0.71 -13.94 16 5 H -0.30 -15.03 7.11 99.48 0.71 -14.32 16 6 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 7 C -0.20 -11.05 8.86 84.03 0.74 -10.31 16 8 H 0.09 4.52 6.89 -2.91 -0.02 4.50 16 9 N -0.61 -30.16 3.05 -673.27 -2.05 -32.21 16 10 C 0.19 9.51 4.82 86.72 0.42 9.93 16 11 C -0.13 -4.84 6.14 32.29 0.20 -4.64 16 12 C -0.10 -3.26 3.80 -9.70 -0.04 -3.30 16 13 H 0.13 3.25 8.14 -2.38 -0.02 3.23 16 14 C 0.14 5.57 4.61 86.56 0.40 5.97 16 15 N -0.56 -22.11 3.19 -843.35 -2.69 -24.80 16 16 C 0.55 22.77 7.48 86.62 0.65 23.42 16 17 O -0.59 -27.15 15.91 -4.18 -0.07 -27.21 16 18 C -0.02 -0.56 6.60 40.98 0.27 -0.29 16 19 C -0.04 -1.32 9.72 22.91 0.22 -1.10 16 20 C -0.02 -0.39 6.78 38.69 0.26 -0.13 16 21 C -0.17 -3.31 10.98 22.62 0.25 -3.06 16 22 C -0.15 -2.17 10.80 22.02 0.24 -1.93 16 23 C -0.01 -0.08 11.61 83.46 0.97 0.89 16 24 N -0.40 -8.22 2.95 -350.60 -1.04 -9.25 16 25 C 0.31 6.44 12.16 179.86 2.19 8.62 16 26 N -0.48 -14.09 5.36 -186.90 -1.00 -15.09 16 27 C 0.15 5.13 4.15 86.41 0.36 5.49 16 28 C -0.13 -4.04 5.08 29.55 0.15 -3.89 16 29 C 0.16 6.04 2.93 44.64 0.13 6.17 16 30 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.24 14.85 8.31 -92.71 -0.77 14.08 16 32 H 0.00 -0.24 7.13 -2.39 -0.02 -0.25 16 33 H 0.00 0.25 7.59 -2.38 -0.02 0.24 16 34 H 0.07 2.55 7.81 -2.39 -0.02 2.53 16 35 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 36 H 0.03 1.26 6.56 -2.39 -0.02 1.24 16 37 H 0.06 2.25 8.04 -2.39 -0.02 2.23 16 38 H 0.15 4.75 7.66 -2.91 -0.02 4.73 16 39 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 40 H 0.18 1.32 8.06 -2.91 -0.02 1.30 16 41 H 0.22 0.91 8.06 -2.91 -0.02 0.88 16 42 H 0.25 2.49 8.06 -2.91 -0.02 2.47 16 43 H 0.10 2.98 6.16 -2.39 -0.01 2.97 16 44 H 0.05 2.10 6.44 -2.39 -0.02 2.09 16 45 H 0.07 2.41 7.36 -2.39 -0.02 2.39 16 46 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -81.48 358.52 4.28 -77.20 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 1.00 Total: 14.49 kcal Atomic # 6 Polarization: 20.06 SS G_CDS: 7.87 Total: 27.93 kcal Atomic # 7 Polarization: -134.67 SS G_CDS: -6.55 Total: -141.23 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: -0.07 Total: -27.21 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.82 kcal Total: -81.48 4.28 -77.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036749178.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.279 kcal (2) G-P(sol) polarization free energy of solvation -81.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds