Wall clock time and date at job start Tue Mar 31 2020 23:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86791 * 119.99987 * 2 1 4 4 H 1.48501 * 109.47313 * 239.99839 * 3 2 1 5 5 H 1.48503 * 109.47417 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47459 * 119.99732 * 3 2 1 7 7 C 1.38810 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99969 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99930 * 0.02562 * 7 2 1 10 10 C 1.46864 * 125.34058 * 0.02562 * 9 7 2 11 11 C 1.54462 * 106.65798 * 195.41105 * 10 9 7 12 12 C 1.53383 * 102.53909 * 332.25946 * 11 10 9 13 13 H 1.09005 * 105.68448 * 278.45920 * 12 11 10 14 14 C 1.49274 * 114.29575 * 161.97309 * 12 11 10 15 15 N 1.45651 * 114.67390 * 259.00861 * 14 12 11 16 16 C 1.34773 * 120.30346 * 143.50170 * 15 14 12 17 17 O 1.21641 * 120.00310 * 175.76107 * 16 15 14 18 18 C 1.47175 * 119.99911 * 355.76229 * 16 15 14 19 19 C 1.38591 * 120.72341 * 50.42037 * 18 16 15 20 20 C 1.38928 * 121.36157 * 180.02562 * 19 18 16 21 21 C 1.35826 * 122.59597 * 359.97023 * 20 19 18 22 22 C 1.40840 * 120.55607 * 0.02562 * 21 20 19 23 23 C 1.38428 * 134.89570 * 179.97438 * 22 21 20 24 24 N 1.33895 * 107.84208 * 180.02562 * 23 22 21 25 25 H 0.97004 * 125.01438 * 180.02562 * 24 23 22 26 26 N 1.39981 * 109.96355 * 359.97438 * 24 23 22 27 27 C 1.31478 * 109.01375 * 359.74436 * 26 24 23 28 28 C 1.46822 * 119.39268 * 323.52691 * 15 14 12 29 29 C 1.52966 * 107.39431 * 55.01277 * 28 15 14 30 30 C 1.48013 * 125.33310 * 179.71747 * 9 7 2 31 31 H 1.09003 * 110.21712 * 303.19751 * 30 9 7 32 32 H 0.96994 * 120.00227 * 0.02562 * 1 2 3 33 33 H 1.09000 * 110.01718 * 314.70953 * 10 9 7 34 34 H 1.09004 * 110.01906 * 76.10472 * 10 9 7 35 35 H 1.08996 * 110.79818 * 90.51944 * 11 10 9 36 36 H 1.09001 * 110.79317 * 213.99901 * 11 10 9 37 37 H 1.08997 * 108.44197 * 20.34985 * 14 12 11 38 38 H 1.08995 * 108.44568 * 137.66131 * 14 12 11 39 39 H 1.07996 * 119.32211 * 359.97438 * 19 18 16 40 40 H 1.07996 * 118.70079 * 179.97438 * 20 19 18 41 41 H 1.07998 * 119.72001 * 179.97438 * 21 20 19 42 42 H 1.08001 * 126.07882 * 359.97438 * 23 22 21 43 43 H 1.09005 * 109.87277 * 174.48935 * 28 15 14 44 44 H 1.09005 * 109.87245 * 295.46883 * 28 15 14 45 45 H 1.09005 * 109.37685 * 58.68445 * 29 28 15 46 46 H 1.09001 * 109.38380 * 178.46646 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1367 -2.5247 -0.0005 11 6 -0.4451 -3.9861 0.3931 12 6 0.8042 -4.7323 -0.0917 13 1 0.6539 -4.8964 -1.1588 14 6 0.9879 -6.0828 0.5172 15 7 1.9647 -6.1355 1.5963 16 6 1.7601 -6.9369 2.6603 17 8 2.6142 -7.0354 3.5208 18 6 0.5031 -7.6929 2.7812 19 6 0.0355 -8.4623 1.7275 20 6 -1.1494 -9.1807 1.8270 21 6 -1.9159 -9.1763 2.9483 22 6 -1.5300 -8.4266 4.0764 23 6 -2.0637 -8.2107 5.3353 24 7 -1.2396 -7.3866 5.9944 25 1 -1.3760 -7.0715 6.9017 26 7 -0.1516 -7.0479 5.1815 27 6 -0.2788 -7.6533 4.0213 28 6 3.1742 -5.3071 1.5144 29 6 2.7240 -3.8594 1.3113 30 6 1.9432 -3.7331 -0.0049 31 1 2.6061 -3.8398 -0.8636 32 1 -0.4850 0.8400 -0.0004 33 1 -0.5758 -1.8417 0.7267 34 1 -0.5304 -2.3150 -0.9951 35 1 -0.5574 -4.0806 1.4732 36 1 -1.3354 -4.3461 -0.1226 37 1 0.0267 -6.4196 0.9055 38 1 1.3008 -6.7742 -0.2652 39 1 0.6035 -8.5035 0.8099 40 1 -1.4738 -9.7659 0.9792 41 1 -2.8293 -9.7519 2.9748 42 1 -2.9821 -8.6314 5.7175 43 1 3.7444 -5.3915 2.4396 44 1 3.7865 -5.6276 0.6715 45 1 2.0865 -3.5588 2.1428 46 1 3.5989 -3.2104 1.2732 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036787500.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:36 Heat of formation + Delta-G solvation = 103.585575 kcal Electronic energy + Delta-G solvation = -30088.592268 eV Core-core repulsion = 26173.890394 eV Total energy + Delta-G solvation = -3914.701875 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.44530 -40.11486 -38.17957 -36.98140 -35.18363 -32.67087 -32.52523 -31.74592 -30.78045 -29.60359 -28.92821 -28.05733 -25.46685 -24.56400 -23.48122 -22.89065 -21.99051 -21.38725 -20.20790 -19.55984 -18.43387 -17.86840 -17.50427 -16.87018 -16.48281 -15.92986 -15.34431 -15.24476 -14.90956 -14.83543 -14.64381 -14.08791 -13.76765 -13.67854 -13.44453 -13.00071 -12.78888 -12.46478 -12.24559 -12.19967 -12.04865 -11.96554 -11.61979 -11.38759 -11.27354 -10.87636 -10.79227 -10.69764 -10.66606 -10.44584 -10.10888 -9.99077 -9.87023 -9.58114 -9.49533 -9.40886 -8.99152 -8.57899 -8.32088 -7.79951 -6.79303 -5.63895 -3.00980 0.22937 1.61988 2.10225 2.43726 2.88116 3.22373 3.43244 3.47520 3.48415 3.68186 4.02636 4.27663 4.51332 4.64923 4.76814 4.96419 4.99158 5.11139 5.14721 5.28031 5.30708 5.39481 5.46526 5.57078 5.60998 5.73641 5.81923 5.90642 5.99283 6.03636 6.10823 6.13386 6.15775 6.32010 6.32113 6.40994 6.47550 6.59337 6.62422 6.71636 6.82094 6.82588 7.00664 7.17741 7.40064 7.58204 7.64532 7.69085 7.89329 8.35558 8.38788 9.26894 9.87071 10.51875 11.43574 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015653 B = 0.003154 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.339783 B = 8876.054664 C = 9102.820371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.010 4.010 3 Si 0.911 3.089 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.221 4.221 8 H 0.077 0.923 9 N -0.600 5.600 10 C 0.167 3.833 11 C -0.135 4.135 12 C -0.108 4.108 13 H 0.065 0.935 14 C 0.125 3.875 15 N -0.594 5.594 16 C 0.564 3.436 17 O -0.534 6.534 18 C -0.105 4.105 19 C -0.040 4.040 20 C -0.164 4.164 21 C -0.020 4.020 22 C -0.216 4.216 23 C 0.089 3.911 24 N -0.427 5.427 25 H 0.445 0.555 26 N -0.281 5.281 27 C 0.135 3.865 28 C 0.112 3.888 29 C -0.138 4.138 30 C 0.173 3.827 31 H 0.042 0.958 32 H 0.251 0.749 33 H 0.082 0.918 34 H 0.018 0.982 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.083 0.917 38 H 0.058 0.942 39 H 0.135 0.865 40 H 0.128 0.872 41 H 0.126 0.874 42 H 0.191 0.809 43 H 0.087 0.913 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.086 -21.288 5.705 23.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.350 4.350 8 H 0.094 0.906 9 N -0.324 5.324 10 C 0.042 3.958 11 C -0.173 4.173 12 C -0.128 4.128 13 H 0.084 0.916 14 C 0.001 3.999 15 N -0.327 5.327 16 C 0.353 3.647 17 O -0.412 6.412 18 C -0.111 4.111 19 C -0.062 4.062 20 C -0.184 4.184 21 C -0.040 4.040 22 C -0.226 4.226 23 C -0.068 4.068 24 N -0.127 5.127 25 H 0.289 0.711 26 N -0.107 5.107 27 C -0.023 4.023 28 C -0.010 4.010 29 C -0.178 4.178 30 C 0.066 3.934 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.100 0.900 34 H 0.036 0.964 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.076 0.924 39 H 0.153 0.847 40 H 0.146 0.854 41 H 0.144 0.856 42 H 0.207 0.793 43 H 0.106 0.894 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.928 -20.236 6.853 22.172 hybrid contribution -0.309 0.622 -0.085 0.699 sum -6.237 -19.615 6.768 21.667 Atomic orbital electron populations 1.69920 1.04847 1.24859 1.57481 1.24771 0.95692 0.97592 1.02496 0.86205 0.78432 0.83302 0.77871 1.21258 1.21678 1.21204 1.18982 0.90447 0.82375 1.43166 0.90557 1.44702 1.01510 0.99422 1.86806 1.21373 0.84512 0.90143 0.99732 1.22669 0.95344 0.99217 1.00117 1.20724 0.97878 0.93735 1.00416 0.91648 1.20740 0.92864 0.97251 0.89041 1.47677 1.22227 1.42326 1.20454 1.17966 0.86168 0.79409 0.81194 1.90786 1.45146 1.64985 1.40265 1.19735 0.96068 1.03797 0.91497 1.21250 0.95117 0.93338 0.96530 1.20318 0.96004 1.03197 0.98864 1.20245 0.98221 0.94872 0.90676 1.19567 0.98511 1.08446 0.96084 1.22763 0.96783 0.94742 0.92522 1.46472 1.16575 1.34185 1.15463 0.71064 1.77750 1.05497 1.24388 1.03114 1.21476 0.93765 0.94959 0.92059 1.21698 0.85991 0.90913 1.02423 1.22488 1.01236 0.93422 1.00648 1.20560 0.92387 0.86027 0.94461 0.94077 0.93835 0.89996 0.96442 0.92690 0.92143 0.89905 0.92405 0.84717 0.85378 0.85615 0.79260 0.89447 0.91620 0.91461 0.91258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.18 10.22 55.49 0.57 -26.62 16 2 C -0.01 -0.28 5.48 -17.43 -0.10 -0.37 16 3 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.22 -6.13 9.83 -15.06 -0.15 -6.28 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.60 -15.15 3.04 -163.71 -0.50 -15.65 16 10 C 0.17 4.08 5.54 -3.08 -0.02 4.07 16 11 C -0.13 -2.56 6.37 -25.77 -0.16 -2.72 16 12 C -0.11 -1.84 2.45 -92.88 -0.23 -2.07 16 13 H 0.07 1.05 8.04 -51.93 -0.42 0.63 16 14 C 0.12 1.76 4.69 -6.33 -0.03 1.73 16 15 N -0.59 -9.63 3.00 -177.69 -0.53 -10.16 16 16 C 0.56 9.90 7.26 -12.63 -0.09 9.81 16 17 O -0.53 -11.18 16.47 5.24 0.09 -11.09 16 18 C -0.10 -1.56 5.02 -102.74 -0.52 -2.08 16 19 C -0.04 -0.44 7.54 -39.20 -0.30 -0.74 16 20 C -0.16 -1.44 9.83 -40.19 -0.39 -1.84 16 21 C -0.02 -0.17 10.02 -39.46 -0.40 -0.56 16 22 C -0.22 -2.34 6.34 -105.21 -0.67 -3.01 16 23 C 0.09 0.68 12.08 -16.58 -0.20 0.48 16 24 N -0.43 -4.10 7.18 30.86 0.22 -3.88 16 25 H 0.44 2.53 8.96 -182.68 -1.64 0.89 16 26 N -0.28 -4.39 12.67 34.35 0.44 -3.96 16 27 C 0.14 2.04 7.47 -80.98 -0.60 1.43 16 28 C 0.11 1.86 6.42 -3.88 -0.02 1.83 16 29 C -0.14 -2.67 5.19 -26.46 -0.14 -2.81 16 30 C 0.17 3.51 3.44 -67.44 -0.23 3.28 16 31 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.08 2.28 6.41 -51.93 -0.33 1.94 16 34 H 0.02 0.46 8.12 -51.93 -0.42 0.04 16 35 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.08 1.11 5.01 -51.93 -0.26 0.85 16 38 H 0.06 0.66 7.73 -51.93 -0.40 0.26 16 39 H 0.14 1.22 6.77 -52.49 -0.36 0.87 16 40 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 42 H 0.19 0.46 8.06 -52.49 -0.42 0.03 16 43 H 0.09 1.53 7.01 -51.93 -0.36 1.16 16 44 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 46 H 0.07 1.36 8.11 -51.93 -0.42 0.94 16 LS Contribution 365.62 15.07 5.51 5.51 Total: -1.00 -37.23 365.62 -11.02 -48.25 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -7.54 Total: 0.11 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -4.24 Total: 0.16 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: 0.19 Total: -60.26 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.09 Total: -11.09 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -37.23 -11.02 -48.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036787500.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.835 kcal (2) G-P(sol) polarization free energy of solvation -37.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds