Wall clock time and date at job start Tue Mar 31 2020 23:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 120.00213 * 2 1 4 4 H 1.48503 * 109.46885 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.47470 * 240.00100 * 3 2 1 6 6 H 1.48501 * 109.47107 * 119.99872 * 3 2 1 7 7 C 1.38807 * 120.00068 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99925 * 6.13296 * 7 2 1 9 9 N 1.36936 * 120.00334 * 186.13259 * 7 2 1 10 10 C 1.48159 * 126.40266 * 19.05384 * 9 7 2 11 11 C 1.55289 * 107.04003 * 175.04076 * 10 9 7 12 12 C 1.53738 * 101.84368 * 337.51989 * 11 10 9 13 13 H 1.09004 * 111.30600 * 281.04599 * 12 11 10 14 14 C 1.52242 * 114.74998 * 152.76232 * 12 11 10 15 15 N 1.47789 * 106.12353 * 189.87963 * 14 12 11 16 16 C 1.34782 * 119.83122 * 232.11586 * 15 14 12 17 17 O 1.21644 * 120.00327 * 354.97066 * 16 15 14 18 18 C 1.47166 * 120.00008 * 174.97137 * 16 15 14 19 19 C 1.38596 * 120.72371 * 35.95318 * 18 16 15 20 20 C 1.38924 * 121.35991 * 179.97438 * 19 18 16 21 21 C 1.35828 * 122.60064 * 0.02562 * 20 19 18 22 22 C 1.40845 * 120.55563 * 0.02562 * 21 20 19 23 23 C 1.38425 * 134.89820 * 179.97438 * 22 21 20 24 24 N 1.33889 * 107.83941 * 180.02562 * 23 22 21 25 25 H 0.97001 * 125.01504 * 179.97438 * 24 23 22 26 26 N 1.39974 * 109.96588 * 0.02562 * 24 23 22 27 27 C 1.31482 * 109.01758 * 359.69225 * 26 24 23 28 28 C 1.46593 * 120.48599 * 52.46478 * 15 14 12 29 29 C 1.53953 * 110.57762 * 311.85074 * 28 15 14 30 30 C 1.45466 * 126.40522 * 198.74144 * 9 7 2 31 31 H 1.09004 * 109.27004 * 93.83767 * 30 9 7 32 32 H 0.96989 * 120.00222 * 179.71311 * 1 2 3 33 33 H 1.09003 * 109.91663 * 294.38290 * 10 9 7 34 34 H 1.08995 * 109.92509 * 55.49166 * 10 9 7 35 35 H 1.09006 * 110.95482 * 95.65796 * 11 10 9 36 36 H 1.09001 * 110.95781 * 219.37884 * 11 10 9 37 37 H 1.09002 * 110.06415 * 309.63759 * 14 12 11 38 38 H 1.09001 * 110.06754 * 71.20358 * 14 12 11 39 39 H 1.07990 * 119.31983 * 0.02562 * 19 18 16 40 40 H 1.08003 * 118.69956 * 180.02562 * 20 19 18 41 41 H 1.08000 * 119.72483 * 179.97438 * 21 20 19 42 42 H 1.07995 * 126.07825 * 0.02562 * 23 22 21 43 43 H 1.08999 * 109.26226 * 191.56491 * 28 15 14 44 44 H 1.09007 * 109.22539 * 72.11090 * 28 15 14 45 45 H 1.09005 * 109.87566 * 291.59331 * 29 28 15 46 46 H 1.08998 * 109.88466 * 170.50943 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6964 -1.2125 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 1.4749 -2.1347 -0.1009 9 7 3.3737 -1.2056 0.1261 10 6 4.2105 -0.1033 0.6553 11 6 5.6703 -0.6293 0.7167 12 6 5.4558 -2.1509 0.7626 13 1 5.1784 -2.4817 1.7635 14 6 6.6023 -2.9738 0.1915 15 7 6.1070 -4.3635 0.1053 16 6 6.8232 -5.3657 0.6522 17 8 7.9170 -5.1392 1.1340 18 6 6.2821 -6.7342 0.6665 19 6 5.5242 -7.2070 -0.3932 20 6 5.0074 -8.4966 -0.3938 21 6 5.2082 -9.3659 0.6304 22 6 5.9638 -8.9840 1.7560 23 6 6.3454 -9.6047 2.9330 24 7 7.0731 -8.7312 3.6401 25 1 7.4665 -8.9089 4.5088 26 7 7.1816 -7.5232 2.9412 27 6 6.5365 -7.6289 1.8004 28 6 4.8448 -4.6621 -0.5779 29 6 3.7343 -3.7063 -0.1052 30 6 4.2709 -2.2946 -0.2277 31 1 4.6357 -2.1444 -1.2438 32 1 -0.4850 -0.8399 -0.0042 33 1 4.1538 0.7582 -0.0102 34 1 3.8706 0.1751 1.6528 35 1 6.2264 -0.3407 -0.1753 36 1 6.1733 -0.2791 1.6180 37 1 6.8746 -2.6009 -0.7959 38 1 7.4627 -2.9304 0.8593 39 1 5.3320 -6.5600 -1.2361 40 1 4.4229 -8.8207 -1.2421 41 1 4.7842 -10.3580 0.5816 42 1 6.0997 -10.6140 3.2284 43 1 4.5520 -5.6891 -0.3596 44 1 4.9831 -4.5486 -1.6531 45 1 3.4809 -3.9176 0.9338 46 1 2.8519 -3.8234 -0.7341 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036787501.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:40 Heat of formation + Delta-G solvation = 128.107284 kcal Electronic energy + Delta-G solvation = -29838.383108 eV Core-core repulsion = 25924.744574 eV Total energy + Delta-G solvation = -3913.638534 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.55287 -40.31818 -38.45446 -37.12168 -35.52372 -33.00634 -32.28509 -31.60707 -31.30754 -30.17532 -29.14956 -28.10158 -25.65975 -24.40580 -23.45093 -22.79023 -21.93761 -21.66098 -20.51261 -19.69942 -19.00693 -18.42093 -17.69315 -17.16035 -16.26444 -16.07155 -15.55987 -15.38593 -15.08521 -14.99861 -14.78499 -14.29396 -14.10698 -13.81596 -13.52423 -13.13985 -13.05826 -12.79060 -12.61258 -12.45072 -12.28672 -12.10196 -11.84561 -11.63626 -11.25090 -11.06914 -10.83078 -10.75241 -10.67883 -10.52570 -10.51459 -9.96497 -9.80303 -9.58647 -9.16159 -9.01309 -8.99804 -8.67910 -8.51473 -7.88770 -6.98612 -6.27097 -3.24613 0.10638 1.51323 1.99151 2.35605 2.84959 3.05740 3.45139 3.50850 3.62925 3.72878 3.93694 4.18408 4.53794 4.63608 4.67938 4.79340 4.90141 4.97451 5.03436 5.06998 5.16682 5.24503 5.29900 5.35669 5.44205 5.53101 5.61862 5.64157 5.72068 5.86688 5.94916 6.00501 6.03990 6.08372 6.11984 6.17693 6.23389 6.31201 6.33946 6.49367 6.50428 6.55243 6.73442 6.75620 6.82835 6.97447 7.31959 7.49999 7.76871 8.29264 8.35469 9.05572 9.60807 10.29788 11.22680 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018469 B = 0.002974 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.713305 B = 9411.390441 C =10004.664398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.022 4.022 3 Si 1.077 2.923 4 H -0.303 1.303 5 H -0.297 1.297 6 H -0.285 1.285 7 C -0.317 4.317 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.108 3.892 11 C -0.119 4.119 12 C -0.126 4.126 13 H 0.082 0.918 14 C 0.130 3.870 15 N -0.602 5.602 16 C 0.560 3.440 17 O -0.533 6.533 18 C -0.112 4.112 19 C -0.046 4.046 20 C -0.168 4.168 21 C -0.016 4.016 22 C -0.218 4.218 23 C 0.090 3.910 24 N -0.429 5.429 25 H 0.445 0.555 26 N -0.279 5.279 27 C 0.138 3.862 28 C 0.082 3.918 29 C -0.127 4.127 30 C 0.168 3.832 31 H 0.025 0.975 32 H 0.260 0.740 33 H 0.031 0.969 34 H 0.048 0.952 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.150 0.850 40 H 0.130 0.870 41 H 0.127 0.873 42 H 0.191 0.809 43 H 0.105 0.895 44 H 0.070 0.930 45 H 0.066 0.934 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.197 -21.562 1.936 25.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.222 4.222 3 Si 0.911 3.089 4 H -0.232 1.232 5 H -0.226 1.226 6 H -0.212 1.212 7 C -0.445 4.445 8 H 0.094 0.906 9 N -0.330 5.330 10 C -0.016 4.016 11 C -0.158 4.158 12 C -0.147 4.147 13 H 0.101 0.899 14 C 0.009 3.991 15 N -0.334 5.334 16 C 0.349 3.651 17 O -0.410 6.410 18 C -0.119 4.119 19 C -0.068 4.068 20 C -0.187 4.187 21 C -0.036 4.036 22 C -0.229 4.229 23 C -0.067 4.067 24 N -0.129 5.129 25 H 0.289 0.711 26 N -0.105 5.105 27 C -0.020 4.020 28 C -0.041 4.041 29 C -0.166 4.166 30 C 0.060 3.940 31 H 0.042 0.958 32 H 0.070 0.930 33 H 0.049 0.951 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.109 0.891 39 H 0.167 0.833 40 H 0.148 0.852 41 H 0.145 0.855 42 H 0.208 0.792 43 H 0.122 0.878 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 14.193 -18.955 2.959 23.864 hybrid contribution -0.270 -2.379 -0.010 2.395 sum 13.922 -21.334 2.949 25.645 Atomic orbital electron populations 1.70919 1.05645 1.29058 1.51802 1.25939 0.96587 1.01193 0.98446 0.83759 0.73040 0.75720 0.76398 1.23154 1.22574 1.21186 1.20105 0.79422 0.95148 1.49780 0.90578 1.44504 1.02621 1.12320 1.73598 1.22435 0.89671 0.92057 0.97474 1.22413 0.97238 0.94589 1.01554 1.22644 0.96537 0.94891 1.00590 0.89926 1.21574 0.97096 0.79061 1.01411 1.48158 1.22233 1.07160 1.55883 1.17996 0.84789 0.84299 0.78006 1.90792 1.20100 1.83797 1.46356 1.19756 1.04436 0.93408 0.94278 1.21692 0.92079 0.95832 0.97227 1.20386 1.04384 0.93804 1.00145 1.20288 0.93659 0.99003 0.90665 1.19589 1.09963 0.95162 0.98141 1.22770 0.95018 0.96632 0.92296 1.46502 1.38085 1.09775 1.18513 0.71092 1.77776 1.25443 1.00056 1.07196 1.21461 0.95111 0.93002 0.92455 1.22694 0.83697 1.01373 0.96312 1.21856 0.97282 0.95282 1.02225 1.20577 0.89697 0.88787 0.94981 0.95767 0.92993 0.95136 0.93394 0.91315 0.91229 0.90968 0.89103 0.83278 0.85184 0.85520 0.79243 0.87780 0.91194 0.91553 0.90276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.36 13.71 55.49 0.76 -28.60 16 2 C -0.02 -0.66 5.50 -17.43 -0.10 -0.76 16 3 Si 1.08 27.16 24.60 -169.99 -4.18 22.97 16 4 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 5 H -0.30 -7.24 6.86 56.52 0.39 -6.85 16 6 H -0.28 -6.59 5.31 56.52 0.30 -6.29 16 7 C -0.32 -8.94 10.22 -15.06 -0.15 -9.09 16 8 H 0.08 2.24 7.46 -52.48 -0.39 1.84 16 9 N -0.60 -14.65 3.23 -163.26 -0.53 -15.17 16 10 C 0.11 2.36 4.66 -1.92 -0.01 2.36 16 11 C -0.12 -2.04 6.54 -25.13 -0.16 -2.21 16 12 C -0.13 -2.19 2.84 -89.52 -0.25 -2.44 16 13 H 0.08 1.56 8.12 -51.93 -0.42 1.14 16 14 C 0.13 2.00 5.96 -3.72 -0.02 1.98 16 15 N -0.60 -9.13 2.99 -173.79 -0.52 -9.65 16 16 C 0.56 9.29 7.41 -12.63 -0.09 9.19 16 17 O -0.53 -10.56 16.31 5.24 0.09 -10.47 16 18 C -0.11 -1.60 5.62 -102.74 -0.58 -2.18 16 19 C -0.05 -0.49 7.34 -39.20 -0.29 -0.78 16 20 C -0.17 -1.42 9.83 -40.19 -0.39 -1.82 16 21 C -0.02 -0.13 10.02 -39.46 -0.40 -0.52 16 22 C -0.22 -2.23 6.34 -105.21 -0.67 -2.89 16 23 C 0.09 0.62 12.08 -16.59 -0.20 0.42 16 24 N -0.43 -3.70 7.18 30.86 0.22 -3.48 16 25 H 0.44 2.06 8.96 -182.69 -1.64 0.42 16 26 N -0.28 -4.06 12.67 34.35 0.44 -3.63 16 27 C 0.14 1.97 7.34 -80.98 -0.59 1.37 16 28 C 0.08 1.10 4.78 -3.49 -0.02 1.08 16 29 C -0.13 -2.19 5.40 -26.98 -0.15 -2.33 16 30 C 0.17 3.29 2.57 -68.13 -0.18 3.11 16 31 H 0.02 0.49 7.91 -51.93 -0.41 0.08 16 32 H 0.26 8.07 8.72 -40.82 -0.36 7.72 16 33 H 0.03 0.70 4.03 -51.93 -0.21 0.49 16 34 H 0.05 1.10 6.76 -51.93 -0.35 0.75 16 35 H 0.07 1.06 8.12 -51.93 -0.42 0.64 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 38 H 0.09 1.44 7.02 -51.93 -0.36 1.08 16 39 H 0.15 1.33 5.39 -52.49 -0.28 1.05 16 40 H 0.13 0.75 8.06 -52.48 -0.42 0.32 16 41 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 42 H 0.19 0.32 8.06 -52.49 -0.42 -0.10 16 43 H 0.10 1.21 3.69 -52.21 -0.19 1.02 16 44 H 0.07 0.82 8.05 -51.93 -0.42 0.40 16 45 H 0.07 1.23 8.11 -51.93 -0.42 0.81 16 46 H 0.08 1.41 7.75 -51.93 -0.40 1.00 16 LS Contribution 354.89 15.07 5.35 5.35 Total: -1.00 -38.76 354.89 -9.93 -48.69 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -7.30 Total: -0.50 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -4.25 Total: -5.51 kcal Atomic # 7 Polarization: -60.90 SS G_CDS: 0.37 Total: -60.53 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.47 kcal Atomic # 14 Polarization: 27.16 SS G_CDS: -4.18 Total: 22.97 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -38.76 -9.93 -48.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036787501.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.797 kcal (2) G-P(sol) polarization free energy of solvation -38.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds