Wall clock time and date at job start Tue Mar 31 2020 23:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 120.00047 * 2 1 4 4 H 1.48501 * 109.46918 * 274.98680 * 3 2 1 5 5 H 1.48494 * 109.47199 * 34.98804 * 3 2 1 6 6 H 1.48494 * 109.46893 * 154.99242 * 3 2 1 7 7 C 1.38816 * 119.99450 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99248 * 172.56801 * 7 2 1 9 9 N 1.36936 * 120.00183 * 352.56407 * 7 2 1 10 10 C 1.47425 * 126.05772 * 353.64172 * 9 7 2 11 11 C 1.54501 * 107.15318 * 181.59423 * 10 9 7 12 12 C 1.56020 * 102.61838 * 22.82344 * 11 10 9 13 13 H 1.09005 * 112.89743 * 202.90193 * 12 11 10 14 14 C 1.53212 * 106.36205 * 78.29671 * 12 11 10 15 15 N 1.46524 * 110.25724 * 202.96374 * 14 12 11 16 16 C 1.34769 * 121.02218 * 235.57191 * 15 14 12 17 17 O 1.21606 * 119.99974 * 5.95489 * 16 15 14 18 18 C 1.47517 * 120.00413 * 185.96434 * 16 15 14 19 19 C 1.41042 * 119.39446 * 30.33273 * 18 16 15 20 20 C 1.35187 * 121.65641 * 179.97438 * 19 18 16 21 21 C 1.41381 * 119.93017 * 0.02562 * 20 19 18 22 22 N 1.31926 * 134.39257 * 180.02562 * 21 20 19 23 23 N 1.39919 * 109.06040 * 180.02562 * 22 21 20 24 24 H 0.97003 * 124.98578 * 179.97438 * 23 22 21 25 25 C 1.33814 * 110.03163 * 359.97438 * 23 22 21 26 26 C 1.38542 * 107.83391 * 0.02562 * 25 23 22 27 27 C 1.38225 * 119.39439 * 210.06693 * 18 16 15 28 28 C 1.47148 * 117.96711 * 55.49568 * 15 14 12 29 29 C 1.53046 * 107.73965 * 302.66824 * 28 15 14 30 30 C 1.46469 * 126.05428 * 173.63409 * 9 7 2 31 31 H 1.08995 * 108.34333 * 269.15428 * 30 9 7 32 32 H 0.97001 * 119.99745 * 359.97438 * 1 2 3 33 33 H 1.09006 * 109.90258 * 300.96973 * 10 9 7 34 34 H 1.08997 * 109.90427 * 62.03135 * 10 9 7 35 35 H 1.08996 * 110.78003 * 141.10470 * 11 10 9 36 36 H 1.09001 * 110.77620 * 264.35632 * 11 10 9 37 37 H 1.09000 * 109.34622 * 323.15647 * 14 12 11 38 38 H 1.09003 * 109.34880 * 82.70589 * 14 12 11 39 39 H 1.07995 * 119.16979 * 359.97438 * 19 18 16 40 40 H 1.07997 * 120.03639 * 180.02562 * 20 19 18 41 41 H 1.07992 * 126.08719 * 180.02562 * 25 23 22 42 42 H 1.08000 * 120.32540 * 359.97438 * 27 18 16 43 43 H 1.09003 * 109.81511 * 183.08928 * 28 15 14 44 44 H 1.08995 * 109.81581 * 62.25039 * 28 15 14 45 45 H 1.09003 * 109.14844 * 174.78674 * 29 28 15 46 46 H 1.08995 * 109.14991 * 293.94739 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5044 2.6199 0.8028 6 1 3.5965 1.4119 0.5919 7 6 2.0102 -1.2022 -0.0005 8 1 3.0834 -1.2061 -0.1215 9 7 1.3341 -2.3832 0.1524 10 6 -0.1010 -2.5283 0.4571 11 6 -0.3915 -4.0413 0.5733 12 6 1.0132 -4.6335 0.9057 13 1 1.1025 -5.6873 0.6416 14 6 1.2537 -4.3644 2.3947 15 7 2.6896 -4.3709 2.6860 16 6 3.2036 -5.1862 3.6280 17 8 2.4928 -6.0073 4.1750 18 6 4.6284 -5.0824 3.9959 19 6 5.2781 -3.8340 3.9030 20 6 6.5819 -3.6867 4.2288 21 6 7.3278 -4.8018 4.6751 22 7 8.5773 -4.9830 5.0576 23 7 8.7603 -6.3277 5.3983 24 1 9.5936 -6.7139 5.7104 25 6 7.6172 -7.0028 5.2305 26 6 6.6605 -6.1105 4.7747 27 6 5.3007 -6.2092 4.4304 28 6 3.5538 -3.4612 1.9173 29 6 3.3675 -3.7842 0.4329 30 6 1.9086 -3.7260 0.0421 31 1 1.8153 -4.0550 -0.9928 32 1 -0.4850 0.8401 0.0004 33 1 -0.3321 -2.0327 1.4001 34 1 -0.6966 -2.0940 -0.3458 35 1 -1.0956 -4.2389 1.3815 36 1 -0.7674 -4.4364 -0.3705 37 1 0.8371 -3.3922 2.6579 38 1 0.7619 -5.1374 2.9854 39 1 4.7201 -2.9741 3.5631 40 1 7.0532 -2.7183 4.1482 41 1 7.4670 -8.0558 5.4172 42 1 4.7879 -7.1570 4.5006 43 1 4.5953 -3.6134 2.2007 44 1 3.2660 -2.4277 2.1095 45 1 3.9264 -3.0626 -0.1629 46 1 3.7513 -4.7847 0.2338 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036802848.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:58 Heat of formation + Delta-G solvation = 111.780743 kcal Electronic energy + Delta-G solvation = -30037.442929 eV Core-core repulsion = 26123.096424 eV Total energy + Delta-G solvation = -3914.346506 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.56346 -40.21452 -38.36537 -36.80304 -35.00726 -32.82616 -32.36516 -31.58511 -31.07790 -29.54055 -28.94643 -27.60587 -25.52179 -24.75187 -23.81583 -22.67576 -22.15728 -20.90614 -20.09017 -19.77559 -18.56433 -18.35478 -17.45375 -16.57678 -16.06711 -15.94655 -15.26547 -15.23462 -14.83063 -14.61046 -14.21861 -14.15935 -13.93347 -13.89944 -13.37770 -13.27473 -12.88994 -12.77981 -12.26359 -12.14664 -11.91740 -11.78484 -11.49784 -11.19411 -11.03389 -10.94060 -10.75163 -10.65177 -10.56135 -10.53352 -10.13804 -10.02516 -9.90414 -9.59785 -9.59676 -9.49772 -8.88985 -8.60421 -8.17851 -7.81037 -6.79345 -5.70958 -3.04958 0.30820 1.36288 2.12970 2.36656 3.02218 3.32534 3.39265 3.44706 3.47014 3.80937 4.02531 4.31028 4.49050 4.71535 4.82137 4.95114 5.12398 5.20884 5.22547 5.37768 5.40378 5.41488 5.57005 5.60557 5.65604 5.80998 5.92073 5.92825 6.04574 6.13238 6.19917 6.22500 6.31643 6.33098 6.35409 6.37972 6.44595 6.57003 6.59086 6.71003 6.75973 6.81462 6.93680 6.98895 7.28850 7.49837 7.67211 7.81332 7.83018 8.26292 8.46444 9.20261 9.83639 10.51810 11.40147 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014366 B = 0.003389 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.586409 B = 8260.863000 C = 9699.378285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.007 4.007 3 Si 0.905 3.095 4 H -0.291 1.291 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.225 4.225 8 H 0.079 0.921 9 N -0.592 5.592 10 C 0.172 3.828 11 C -0.141 4.141 12 C -0.116 4.116 13 H 0.077 0.923 14 C 0.127 3.873 15 N -0.594 5.594 16 C 0.560 3.440 17 O -0.556 6.556 18 C -0.162 4.162 19 C -0.059 4.059 20 C -0.114 4.114 21 C 0.120 3.880 22 N -0.310 5.310 23 N -0.426 5.426 24 H 0.444 0.556 25 C 0.098 3.902 26 C -0.218 4.218 27 C 0.024 3.976 28 C 0.092 3.908 29 C -0.128 4.128 30 C 0.170 3.830 31 H 0.016 0.984 32 H 0.251 0.749 33 H 0.030 0.970 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.149 0.851 40 H 0.134 0.866 41 H 0.192 0.808 42 H 0.135 0.865 43 H 0.094 0.906 44 H 0.091 0.909 45 H 0.076 0.924 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.314 -14.323 8.692 21.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.353 4.353 8 H 0.097 0.903 9 N -0.318 5.318 10 C 0.047 3.953 11 C -0.180 4.180 12 C -0.136 4.136 13 H 0.095 0.905 14 C 0.005 3.995 15 N -0.324 5.324 16 C 0.350 3.650 17 O -0.436 6.436 18 C -0.166 4.166 19 C -0.081 4.081 20 C -0.135 4.135 21 C -0.034 4.034 22 N -0.138 5.138 23 N -0.125 5.125 24 H 0.288 0.712 25 C -0.061 4.061 26 C -0.228 4.228 27 C 0.003 3.997 28 C -0.030 4.030 29 C -0.168 4.168 30 C 0.062 3.938 31 H 0.034 0.966 32 H 0.062 0.938 33 H 0.049 0.951 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.167 0.833 40 H 0.152 0.848 41 H 0.209 0.791 42 H 0.153 0.847 43 H 0.112 0.888 44 H 0.109 0.891 45 H 0.094 0.906 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 14.046 -13.886 9.155 21.770 hybrid contribution 0.103 0.350 -0.131 0.387 sum 14.148 -13.536 9.024 21.560 Atomic orbital electron populations 1.69959 1.04919 1.24943 1.56636 1.24776 0.95562 0.97572 1.02413 0.86206 0.78744 0.83997 0.77460 1.21792 1.21788 1.20582 1.18953 0.90885 0.82419 1.43067 0.90330 1.44296 1.05144 0.99378 1.82952 1.21278 0.85486 0.88560 0.99928 1.23115 0.95214 0.99449 1.00240 1.22734 0.97394 0.98462 0.95003 0.90460 1.21542 0.79659 1.02761 0.95496 1.47925 1.09074 1.39117 1.36290 1.18155 0.86949 0.80430 0.79478 1.90734 1.61286 1.36762 1.54812 1.19506 0.94353 0.94541 1.08237 1.21210 0.94402 0.97448 0.95058 1.19780 0.93437 0.96371 1.03924 1.21084 0.90751 0.94723 0.96877 1.77666 1.17077 0.92302 1.26788 1.46319 1.11276 1.07448 1.47455 0.71185 1.22822 0.86228 0.98574 0.98461 1.19544 0.95821 0.93489 1.13914 1.20555 0.90338 0.98108 0.90705 1.22515 0.94397 0.94676 0.91392 1.21594 0.98633 1.00803 0.95737 1.20229 0.90871 0.87113 0.95569 0.96631 0.93841 0.95134 0.92384 0.92081 0.92271 0.90399 0.90208 0.83343 0.84771 0.79150 0.84683 0.88833 0.89106 0.90577 0.92719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.02 10.54 55.49 0.58 -25.44 16 2 C -0.01 -0.18 5.45 -17.43 -0.09 -0.27 16 3 Si 0.91 21.23 29.56 -169.99 -5.02 16.21 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.23 -5.73 9.03 -15.06 -0.14 -5.87 16 8 H 0.08 1.91 6.66 -52.49 -0.35 1.56 16 9 N -0.59 -13.83 3.12 -164.50 -0.51 -14.35 16 10 C 0.17 3.97 4.69 -2.75 -0.01 3.95 16 11 C -0.14 -2.57 6.29 -24.33 -0.15 -2.73 16 12 C -0.12 -2.02 3.86 -88.38 -0.34 -2.36 16 13 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 14 C 0.13 2.25 5.46 -3.92 -0.02 2.23 16 15 N -0.59 -9.88 2.94 -174.22 -0.51 -10.40 16 16 C 0.56 9.31 7.41 -12.48 -0.09 9.21 16 17 O -0.56 -10.64 16.08 5.27 0.08 -10.55 16 18 C -0.16 -2.26 5.48 -105.06 -0.58 -2.83 16 19 C -0.06 -0.75 7.22 -39.61 -0.29 -1.04 16 20 C -0.11 -1.39 10.05 -39.47 -0.40 -1.78 16 21 C 0.12 1.50 7.49 -82.98 -0.62 0.88 16 22 N -0.31 -3.64 12.69 33.30 0.42 -3.22 16 23 N -0.43 -3.09 7.17 30.87 0.22 -2.87 16 24 H 0.44 1.40 8.96 -182.73 -1.64 -0.24 16 25 C 0.10 0.68 12.09 -16.58 -0.20 0.48 16 26 C -0.22 -2.39 6.32 -105.23 -0.66 -3.05 16 27 C 0.02 0.30 9.63 -38.69 -0.37 -0.08 16 28 C 0.09 1.46 4.64 -3.66 -0.02 1.44 16 29 C -0.13 -2.16 5.16 -27.64 -0.14 -2.31 16 30 C 0.17 3.30 2.85 -68.37 -0.19 3.11 16 31 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.25 7.00 8.31 -40.82 -0.34 6.67 16 33 H 0.03 0.77 7.52 -51.93 -0.39 0.38 16 34 H 0.06 1.52 7.05 -51.93 -0.37 1.15 16 35 H 0.06 1.01 7.97 -51.93 -0.41 0.60 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.08 1.52 6.80 -51.93 -0.35 1.17 16 38 H 0.08 1.40 7.00 -51.93 -0.36 1.04 16 39 H 0.15 1.85 5.44 -52.49 -0.29 1.56 16 40 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 41 H 0.19 0.45 8.06 -52.49 -0.42 0.02 16 42 H 0.14 1.50 7.86 -52.49 -0.41 1.09 16 43 H 0.09 1.27 3.97 -51.93 -0.21 1.07 16 44 H 0.09 1.63 7.45 -51.93 -0.39 1.24 16 45 H 0.08 1.31 7.02 -51.93 -0.36 0.95 16 46 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 357.22 15.07 5.38 5.38 Total: -1.00 -33.38 357.22 -10.88 -44.26 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -7.20 Total: 1.99 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -4.32 Total: -1.01 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: 0.20 Total: -56.27 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.08 Total: -10.55 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.38 -10.88 -44.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036802848.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.036 kcal (2) G-P(sol) polarization free energy of solvation -33.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds