Wall clock time and date at job start Tue Mar 31 2020 23:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86795 * 119.99956 * 2 1 4 4 H 1.48497 * 109.47152 * 269.99600 * 3 2 1 5 5 H 1.48498 * 109.47361 * 29.99896 * 3 2 1 6 6 H 1.48507 * 109.47249 * 149.99742 * 3 2 1 7 7 C 1.38815 * 120.00043 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99957 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00038 * 359.97438 * 7 2 1 10 10 C 1.48214 * 126.40000 * 359.93522 * 9 7 2 11 11 C 1.55292 * 107.01393 * 175.07885 * 10 9 7 12 12 C 1.53755 * 101.87150 * 337.56764 * 11 10 9 13 13 H 1.08993 * 111.30432 * 280.13744 * 12 11 10 14 14 C 1.52241 * 114.74293 * 152.74051 * 12 11 10 15 15 N 1.47718 * 106.36458 * 190.42036 * 14 12 11 16 16 C 1.34776 * 119.67970 * 232.08089 * 15 14 12 17 17 O 1.21593 * 120.00623 * 356.26451 * 16 15 14 18 18 C 1.47516 * 119.99265 * 176.26910 * 16 15 14 19 19 C 1.41047 * 119.38770 * 230.56951 * 18 16 15 20 20 C 1.35191 * 121.65144 * 179.72160 * 19 18 16 21 21 C 1.41383 * 119.93308 * 0.57248 * 20 19 18 22 22 N 1.31921 * 134.39902 * 179.72464 * 21 20 19 23 23 N 1.39920 * 109.06505 * 179.97438 * 22 21 20 24 24 H 0.96999 * 124.98888 * 180.02562 * 23 22 21 25 25 C 1.33816 * 110.02583 * 359.97438 * 23 22 21 26 26 C 1.38539 * 107.83770 * 359.97438 * 25 23 22 27 27 C 1.38213 * 119.39702 * 50.84619 * 18 16 15 28 28 C 1.46592 * 120.62751 * 52.06195 * 15 14 12 29 29 C 1.53950 * 110.57761 * 312.16716 * 28 15 14 30 30 C 1.45465 * 126.40336 * 180.02562 * 9 7 2 31 31 H 1.09004 * 108.77439 * 94.00295 * 30 9 7 32 32 H 0.97001 * 120.00445 * 359.97438 * 1 2 3 33 33 H 1.09001 * 109.91302 * 55.75654 * 10 9 7 34 34 H 1.09000 * 109.96012 * 294.42921 * 10 9 7 35 35 H 1.08995 * 110.95848 * 219.41339 * 11 10 9 36 36 H 1.09001 * 110.95454 * 95.71963 * 11 10 9 37 37 H 1.09002 * 110.06797 * 309.63878 * 14 12 11 38 38 H 1.08998 * 110.06824 * 71.09905 * 14 12 11 39 39 H 1.07991 * 119.17658 * 0.02562 * 19 18 16 40 40 H 1.07997 * 120.03709 * 180.26929 * 20 19 18 41 41 H 1.07999 * 126.08330 * 180.02562 * 25 23 22 42 42 H 1.07997 * 120.32855 * 359.95645 * 27 18 16 43 43 H 1.09000 * 109.26015 * 72.45543 * 28 15 14 44 44 H 1.09006 * 109.25146 * 191.92706 * 28 15 14 45 45 H 1.09007 * 109.87881 * 170.51838 * 29 28 15 46 46 H 1.08997 * 109.88475 * 291.59974 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1473 -2.5533 0.0036 11 6 -0.4341 -4.0743 -0.1232 12 6 0.8680 -4.5898 -0.7578 13 1 0.8839 -4.4078 -1.8323 14 6 1.2007 -6.0410 -0.4400 15 7 2.5819 -6.2647 -0.9136 16 6 2.8476 -7.3040 -1.7294 17 8 1.9670 -8.0914 -2.0177 18 6 4.2070 -7.4864 -2.2725 19 6 4.3781 -7.6795 -3.6592 20 6 5.6031 -7.8457 -4.2065 21 6 6.7511 -7.8403 -3.3813 22 7 8.0450 -7.9771 -3.5991 23 7 8.7260 -7.8826 -2.3805 24 1 9.6878 -7.9504 -2.2741 25 6 7.8559 -7.6839 -1.3834 26 6 6.5843 -7.6437 -1.9316 27 6 5.2889 -7.4707 -1.4126 28 6 3.6662 -5.3667 -0.5049 29 6 3.2473 -3.8961 -0.6840 30 6 1.9079 -3.7211 0.0028 31 1 1.9823 -4.0705 1.0326 32 1 -0.4851 0.8400 0.0004 33 1 -0.5817 -2.0217 -0.8430 34 1 -0.5631 -2.1737 0.9370 35 1 -1.2860 -4.2571 -0.7781 36 1 -0.5948 -4.5237 0.8568 37 1 1.1416 -6.2115 0.6350 38 1 0.5123 -6.7056 -0.9620 39 1 3.5093 -7.6901 -4.3005 40 1 5.7043 -7.9873 -5.2724 41 1 8.1014 -7.5736 -0.3375 42 1 5.1410 -7.3256 -0.3527 43 1 3.9067 -5.5469 0.5428 44 1 4.5471 -5.5658 -1.1153 45 1 3.9876 -3.2412 -0.2244 46 1 3.1534 -3.6640 -1.7449 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036802849.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:01 Heat of formation + Delta-G solvation = 100.825720 kcal Electronic energy + Delta-G solvation = -29552.955329 eV Core-core repulsion = 25638.133778 eV Total energy + Delta-G solvation = -3914.821551 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.63716 -40.29463 -38.39585 -36.86182 -35.36984 -32.93949 -32.32683 -31.53599 -31.04706 -30.02949 -29.01287 -27.87114 -25.34459 -24.61384 -23.68001 -22.42639 -22.24591 -21.01501 -20.12861 -19.87560 -19.11132 -18.49771 -17.52627 -16.78553 -16.24978 -16.02672 -15.34959 -15.17584 -15.04556 -14.60211 -14.39105 -14.21651 -14.08162 -13.87099 -13.52810 -13.20028 -13.00457 -12.68524 -12.63141 -12.41142 -11.98484 -11.79770 -11.62517 -11.45195 -11.39652 -10.86148 -10.81946 -10.75366 -10.66253 -10.53200 -10.15783 -10.07616 -9.88130 -9.67174 -9.61274 -9.44366 -9.10634 -8.62318 -8.48494 -7.88693 -6.83095 -5.71380 -3.04419 0.22043 1.35304 2.05161 2.31504 2.77385 3.09679 3.39206 3.43904 3.46111 3.60898 3.91939 4.25174 4.48712 4.55203 4.69873 4.85798 5.01932 5.07069 5.12110 5.23433 5.28561 5.33261 5.36869 5.54894 5.58976 5.64264 5.79585 5.83051 5.90887 6.02708 6.06141 6.11163 6.16790 6.20844 6.24851 6.26435 6.38713 6.48010 6.54588 6.63736 6.66036 6.66262 6.85698 7.08642 7.22169 7.51180 7.55852 7.62545 7.81495 8.24686 8.25518 9.19531 9.83306 10.51612 11.41168 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013511 B = 0.003046 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.927391 B = 9189.016430 C =10616.686059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.225 4.225 8 H 0.078 0.922 9 N -0.595 5.595 10 C 0.177 3.823 11 C -0.136 4.136 12 C -0.124 4.124 13 H 0.080 0.920 14 C 0.127 3.873 15 N -0.600 5.600 16 C 0.560 3.440 17 O -0.544 6.544 18 C -0.154 4.154 19 C -0.034 4.034 20 C -0.110 4.110 21 C 0.118 3.882 22 N -0.310 5.310 23 N -0.423 5.423 24 H 0.445 0.555 25 C 0.098 3.902 26 C -0.215 4.215 27 C -0.002 4.002 28 C 0.102 3.898 29 C -0.129 4.129 30 C 0.168 3.832 31 H 0.020 0.980 32 H 0.252 0.748 33 H 0.054 0.946 34 H 0.038 0.962 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.090 0.910 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.193 0.807 42 H 0.134 0.866 43 H 0.065 0.935 44 H 0.088 0.912 45 H 0.075 0.925 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.323 -16.711 -1.355 22.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.353 4.353 8 H 0.096 0.904 9 N -0.320 5.320 10 C 0.053 3.947 11 C -0.175 4.175 12 C -0.144 4.144 13 H 0.098 0.902 14 C 0.005 3.995 15 N -0.331 5.331 16 C 0.348 3.652 17 O -0.422 6.422 18 C -0.159 4.159 19 C -0.057 4.057 20 C -0.131 4.131 21 C -0.036 4.036 22 N -0.138 5.138 23 N -0.122 5.122 24 H 0.289 0.711 25 C -0.061 4.061 26 C -0.225 4.225 27 C -0.023 4.023 28 C -0.021 4.021 29 C -0.168 4.168 30 C 0.060 3.940 31 H 0.037 0.963 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.209 0.791 42 H 0.151 0.849 43 H 0.083 0.917 44 H 0.106 0.894 45 H 0.094 0.906 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 14.731 -17.044 -2.399 22.656 hybrid contribution 0.469 1.190 0.782 1.499 sum 15.200 -15.855 -1.616 22.023 Atomic orbital electron populations 1.69936 1.04881 1.25009 1.57048 1.24787 0.95667 0.97604 1.02397 0.86164 0.78580 0.83742 0.77540 1.21669 1.21727 1.20757 1.18988 0.90328 0.82340 1.43662 0.90416 1.44232 1.01666 0.99486 1.86612 1.21538 0.83923 0.88316 1.00927 1.22720 0.95809 0.99654 0.99316 1.22642 0.97820 0.93304 1.00670 0.90193 1.21635 0.81491 0.97140 0.99218 1.48248 1.09936 1.27249 1.47710 1.18305 0.87755 0.80985 0.78150 1.90770 1.47499 1.43906 1.60030 1.19495 0.92847 1.08909 0.94606 1.20530 0.97288 0.94617 0.93234 1.19736 0.88638 1.05673 0.99042 1.21047 0.91893 0.97337 0.93334 1.77663 1.05028 1.30482 1.00662 1.46325 1.10321 1.50639 1.04953 0.71093 1.22847 0.89298 0.98672 0.95243 1.19491 0.93385 1.15933 0.93721 1.20694 0.89174 0.93233 0.99196 1.22093 0.89605 0.90443 0.99987 1.21887 0.99317 0.93542 1.02067 1.20647 0.91146 0.87180 0.95073 0.96269 0.93771 0.92734 0.94396 0.92055 0.92344 0.91283 0.89180 0.84805 0.84847 0.79051 0.84864 0.91679 0.89387 0.90633 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.76 10.44 55.49 0.58 -26.19 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 21.76 29.55 -169.99 -5.02 16.74 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.22 -6.04 9.88 -15.06 -0.15 -6.19 16 8 H 0.08 1.99 7.22 -52.49 -0.38 1.61 16 9 N -0.60 -14.62 3.35 -163.02 -0.55 -15.17 16 10 C 0.18 4.22 5.45 -1.88 -0.01 4.21 16 11 C -0.14 -2.50 6.53 -25.12 -0.16 -2.66 16 12 C -0.12 -2.18 2.86 -89.35 -0.26 -2.43 16 13 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 14 C 0.13 1.92 5.94 -3.76 -0.02 1.89 16 15 N -0.60 -8.58 3.00 -173.73 -0.52 -9.10 16 16 C 0.56 8.36 7.16 -12.48 -0.09 8.27 16 17 O -0.54 -9.79 16.41 5.28 0.09 -9.70 16 18 C -0.15 -1.93 4.92 -105.06 -0.52 -2.45 16 19 C -0.03 -0.40 9.54 -39.60 -0.38 -0.78 16 20 C -0.11 -1.22 10.05 -39.47 -0.40 -1.62 16 21 C 0.12 1.37 7.49 -82.98 -0.62 0.75 16 22 N -0.31 -3.41 12.69 33.30 0.42 -2.99 16 23 N -0.42 -2.82 7.17 30.87 0.22 -2.60 16 24 H 0.44 1.21 8.96 -182.73 -1.64 -0.43 16 25 C 0.10 0.61 12.09 -16.58 -0.20 0.40 16 26 C -0.22 -2.11 6.32 -105.23 -0.66 -2.77 16 27 C 0.00 -0.02 7.39 -38.69 -0.29 -0.30 16 28 C 0.10 1.30 5.04 -3.50 -0.02 1.29 16 29 C -0.13 -2.13 5.48 -26.97 -0.15 -2.28 16 30 C 0.17 3.26 2.55 -67.96 -0.17 3.09 16 31 H 0.02 0.39 7.95 -51.93 -0.41 -0.02 16 32 H 0.25 7.14 8.31 -40.82 -0.34 6.81 16 33 H 0.05 1.45 7.21 -51.93 -0.37 1.08 16 34 H 0.04 0.99 7.77 -51.93 -0.40 0.58 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.06 0.98 8.11 -51.93 -0.42 0.56 16 37 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 38 H 0.09 1.40 7.02 -51.93 -0.36 1.04 16 39 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 40 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 41 H 0.19 0.32 8.06 -52.49 -0.42 -0.11 16 42 H 0.13 1.10 7.03 -52.49 -0.37 0.73 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.09 1.00 4.72 -51.93 -0.24 0.75 16 45 H 0.08 1.25 7.62 -51.93 -0.40 0.86 16 46 H 0.07 1.22 8.13 -51.93 -0.42 0.80 16 LS Contribution 364.85 15.07 5.50 5.50 Total: -1.00 -35.02 364.85 -10.99 -46.01 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -7.52 Total: -0.59 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -4.19 Total: -1.91 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: 0.16 Total: -56.04 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.02 -10.99 -46.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036802849.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.834 kcal (2) G-P(sol) polarization free energy of solvation -35.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds