Wall clock time and date at job start Tue Mar 31 2020 23:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86795 * 119.99956 * 2 1 4 4 H 1.48497 * 109.47152 * 269.99600 * 3 2 1 5 5 H 1.48498 * 109.47361 * 29.99896 * 3 2 1 6 6 H 1.48507 * 109.47249 * 149.99742 * 3 2 1 7 7 C 1.38815 * 120.00043 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99957 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00038 * 359.97438 * 7 2 1 10 10 C 1.48214 * 126.40000 * 359.93522 * 9 7 2 11 11 C 1.55292 * 107.01393 * 175.07885 * 10 9 7 12 12 C 1.53755 * 101.87150 * 337.56764 * 11 10 9 13 13 H 1.08993 * 111.30432 * 280.13744 * 12 11 10 14 14 C 1.52241 * 114.74293 * 152.74051 * 12 11 10 15 15 N 1.47718 * 106.36458 * 190.42036 * 14 12 11 16 16 C 1.34776 * 119.67970 * 232.08089 * 15 14 12 17 17 O 1.21593 * 120.00623 * 356.26451 * 16 15 14 18 18 C 1.47516 * 119.99265 * 176.26910 * 16 15 14 19 19 C 1.41047 * 119.38770 * 230.56951 * 18 16 15 20 20 C 1.35191 * 121.65144 * 179.72160 * 19 18 16 21 21 C 1.41383 * 119.93308 * 0.57248 * 20 19 18 22 22 N 1.31921 * 134.39902 * 179.72464 * 21 20 19 23 23 N 1.39920 * 109.06505 * 179.97438 * 22 21 20 24 24 H 0.96999 * 124.98888 * 180.02562 * 23 22 21 25 25 C 1.33816 * 110.02583 * 359.97438 * 23 22 21 26 26 C 1.38539 * 107.83770 * 359.97438 * 25 23 22 27 27 C 1.38213 * 119.39702 * 50.84619 * 18 16 15 28 28 C 1.46592 * 120.62751 * 52.06195 * 15 14 12 29 29 C 1.53950 * 110.57761 * 312.16716 * 28 15 14 30 30 C 1.45465 * 126.40336 * 180.02562 * 9 7 2 31 31 H 1.09004 * 108.77439 * 94.00295 * 30 9 7 32 32 H 0.97001 * 120.00445 * 359.97438 * 1 2 3 33 33 H 1.09001 * 109.91302 * 55.75654 * 10 9 7 34 34 H 1.09000 * 109.96012 * 294.42921 * 10 9 7 35 35 H 1.08995 * 110.95848 * 219.41339 * 11 10 9 36 36 H 1.09001 * 110.95454 * 95.71963 * 11 10 9 37 37 H 1.09002 * 110.06797 * 309.63878 * 14 12 11 38 38 H 1.08998 * 110.06824 * 71.09905 * 14 12 11 39 39 H 1.07991 * 119.17658 * 0.02562 * 19 18 16 40 40 H 1.07997 * 120.03709 * 180.26929 * 20 19 18 41 41 H 1.07999 * 126.08330 * 180.02562 * 25 23 22 42 42 H 1.07997 * 120.32855 * 359.95645 * 27 18 16 43 43 H 1.09000 * 109.26015 * 72.45543 * 28 15 14 44 44 H 1.09006 * 109.25146 * 191.92706 * 28 15 14 45 45 H 1.09007 * 109.87881 * 170.51838 * 29 28 15 46 46 H 1.08997 * 109.88475 * 291.59974 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1473 -2.5533 0.0036 11 6 -0.4341 -4.0743 -0.1232 12 6 0.8680 -4.5898 -0.7578 13 1 0.8839 -4.4078 -1.8323 14 6 1.2007 -6.0410 -0.4400 15 7 2.5819 -6.2647 -0.9136 16 6 2.8476 -7.3040 -1.7294 17 8 1.9670 -8.0914 -2.0177 18 6 4.2070 -7.4864 -2.2725 19 6 4.3781 -7.6795 -3.6592 20 6 5.6031 -7.8457 -4.2065 21 6 6.7511 -7.8403 -3.3813 22 7 8.0450 -7.9771 -3.5991 23 7 8.7260 -7.8826 -2.3805 24 1 9.6878 -7.9504 -2.2741 25 6 7.8559 -7.6839 -1.3834 26 6 6.5843 -7.6437 -1.9316 27 6 5.2889 -7.4707 -1.4126 28 6 3.6662 -5.3667 -0.5049 29 6 3.2473 -3.8961 -0.6840 30 6 1.9079 -3.7211 0.0028 31 1 1.9823 -4.0705 1.0326 32 1 -0.4851 0.8400 0.0004 33 1 -0.5817 -2.0217 -0.8430 34 1 -0.5631 -2.1737 0.9370 35 1 -1.2860 -4.2571 -0.7781 36 1 -0.5948 -4.5237 0.8568 37 1 1.1416 -6.2115 0.6350 38 1 0.5123 -6.7056 -0.9620 39 1 3.5093 -7.6901 -4.3005 40 1 5.7043 -7.9873 -5.2724 41 1 8.1014 -7.5736 -0.3375 42 1 5.1410 -7.3256 -0.3527 43 1 3.9067 -5.5469 0.5428 44 1 4.5471 -5.5658 -1.1153 45 1 3.9876 -3.2412 -0.2244 46 1 3.1534 -3.6640 -1.7449 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036802849.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:00 Heat of formation + Delta-G solvation = 77.740224 kcal Electronic energy + Delta-G solvation = -29553.956391 eV Core-core repulsion = 25638.133778 eV Total energy + Delta-G solvation = -3915.822613 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.33718 -41.45475 -39.78183 -37.73491 -36.78397 -34.56399 -33.30065 -32.97589 -31.77913 -31.41405 -30.26601 -29.20517 -26.75664 -25.86527 -24.87461 -23.73775 -23.24087 -21.87990 -21.66963 -21.23666 -20.29491 -19.11023 -18.77918 -18.06124 -17.44901 -17.12730 -16.91224 -16.36264 -16.05302 -15.84282 -15.65523 -15.43842 -15.19429 -14.96743 -14.71974 -14.47714 -14.08186 -14.06083 -13.76163 -13.71762 -13.28430 -13.18762 -13.07651 -12.73249 -12.65197 -12.54789 -12.42338 -12.06947 -11.97763 -11.74936 -11.59360 -11.49571 -11.40662 -11.29320 -10.98218 -10.77447 -10.67930 -9.86035 -9.65547 -8.83778 -8.63488 -7.80252 -5.14295 -0.44119 0.50946 1.40013 1.47607 1.49341 1.57433 1.69313 1.84680 2.03879 2.53094 2.78770 3.19254 3.38785 3.48297 3.66206 3.68584 3.87573 3.94572 4.04801 4.10466 4.20792 4.26143 4.27405 4.41958 4.46154 4.50079 4.54605 4.56267 4.69593 4.76040 4.86583 4.87146 4.95194 5.05984 5.11274 5.12917 5.24976 5.25660 5.35736 5.46226 5.51259 5.58759 5.59439 5.70166 5.74495 5.80019 6.24040 6.25648 6.40752 6.55473 7.12511 7.14316 7.83289 8.52286 9.31798 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013511 B = 0.003046 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.927391 B = 9189.016430 C =10616.686059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.072 4.072 3 Si 0.973 3.027 4 H -0.291 1.291 5 H -0.299 1.299 6 H -0.264 1.264 7 C -0.226 4.226 8 H 0.089 0.911 9 N -0.617 5.617 10 C 0.182 3.818 11 C -0.122 4.122 12 C -0.110 4.110 13 H 0.058 0.942 14 C 0.135 3.865 15 N -0.600 5.600 16 C 0.563 3.437 17 O -0.583 6.583 18 C -0.190 4.190 19 C -0.042 4.042 20 C -0.123 4.123 21 C 0.099 3.901 22 N -0.351 5.351 23 N -0.410 5.410 24 H 0.462 0.538 25 C 0.143 3.857 26 C -0.247 4.247 27 C 0.026 3.974 28 C 0.112 3.888 29 C -0.123 4.123 30 C 0.159 3.841 31 H 0.029 0.971 32 H 0.244 0.756 33 H 0.014 0.986 34 H 0.005 0.995 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.126 0.874 40 H 0.139 0.861 41 H 0.249 0.751 42 H 0.161 0.839 43 H 0.096 0.904 44 H 0.108 0.892 45 H 0.078 0.922 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.883 -18.163 0.642 25.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.265 4.265 3 Si 0.802 3.198 4 H -0.218 1.218 5 H -0.226 1.226 6 H -0.188 1.188 7 C -0.355 4.355 8 H 0.107 0.893 9 N -0.341 5.341 10 C 0.057 3.943 11 C -0.160 4.160 12 C -0.131 4.131 13 H 0.077 0.923 14 C 0.013 3.987 15 N -0.331 5.331 16 C 0.354 3.646 17 O -0.464 6.464 18 C -0.195 4.195 19 C -0.065 4.065 20 C -0.144 4.144 21 C -0.055 4.055 22 N -0.180 5.180 23 N -0.110 5.110 24 H 0.311 0.689 25 C -0.018 4.018 26 C -0.257 4.257 27 C 0.005 3.995 28 C -0.011 4.011 29 C -0.162 4.162 30 C 0.052 3.948 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.032 0.968 34 H 0.023 0.977 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.104 0.896 39 H 0.144 0.856 40 H 0.157 0.843 41 H 0.265 0.735 42 H 0.178 0.822 43 H 0.115 0.885 44 H 0.125 0.875 45 H 0.096 0.904 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 18.367 -18.528 -0.414 26.093 hybrid contribution -0.479 1.604 0.207 1.687 sum 17.889 -16.924 -0.207 24.627 Atomic orbital electron populations 1.70169 1.06385 1.24984 1.58985 1.25622 0.96499 1.00979 1.03363 0.85144 0.77882 0.79535 0.77223 1.21817 1.22585 1.18846 1.19426 0.91078 0.83374 1.41671 0.89324 1.44531 1.02199 1.00964 1.86416 1.21301 0.83851 0.91623 0.97503 1.22588 0.96856 0.95514 1.01065 1.22472 0.96650 0.94945 0.99025 0.92347 1.21501 0.82216 0.94615 1.00359 1.48284 1.09841 1.27338 1.47666 1.18636 0.88360 0.80352 0.77277 1.90741 1.49042 1.45400 1.61191 1.19310 0.92187 1.12941 0.95037 1.20501 0.97356 0.95223 0.93430 1.19801 0.88722 1.06275 0.99574 1.21232 0.92105 0.97497 0.94648 1.77611 1.05060 1.32329 1.02984 1.46426 1.11458 1.48987 1.04105 0.68919 1.23714 0.87418 0.93648 0.97021 1.19792 0.94693 1.18050 0.93134 1.20912 0.88599 0.90096 0.99934 1.22158 0.89429 0.87269 1.02210 1.21818 0.97639 0.96527 1.00248 1.20901 0.93111 0.84858 0.95943 0.95340 0.94710 0.96786 0.97670 0.90688 0.90049 0.89227 0.89637 0.85627 0.84343 0.73477 0.82186 0.88546 0.87452 0.90394 0.93465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.88 10.44 21.65 0.23 -57.65 16 2 C -0.07 -4.08 5.49 84.86 0.47 -3.62 16 3 Si 0.97 45.36 29.55 68.60 2.03 47.39 16 4 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 7 C -0.23 -12.25 9.88 84.03 0.83 -11.42 16 8 H 0.09 4.47 7.22 -2.91 -0.02 4.45 16 9 N -0.62 -30.67 3.35 -669.67 -2.24 -32.91 16 10 C 0.18 9.00 5.45 86.84 0.47 9.48 16 11 C -0.12 -4.42 6.53 31.64 0.21 -4.22 16 12 C -0.11 -3.81 2.86 -9.97 -0.03 -3.84 16 13 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 14 C 0.14 3.82 5.94 85.90 0.51 4.33 16 15 N -0.60 -15.87 3.00 -821.81 -2.46 -18.33 16 16 C 0.56 16.19 7.16 86.69 0.62 16.81 16 17 O -0.58 -20.95 16.41 -4.01 -0.07 -21.01 16 18 C -0.19 -4.52 4.92 -20.15 -0.10 -4.62 16 19 C -0.04 -1.02 9.54 22.26 0.21 -0.81 16 20 C -0.12 -2.75 10.05 22.34 0.22 -2.53 16 21 C 0.10 2.14 7.49 42.27 0.32 2.46 16 22 N -0.35 -7.05 12.69 -48.54 -0.62 -7.66 16 23 N -0.41 -3.80 7.17 -56.26 -0.40 -4.20 16 24 H 0.46 0.53 8.96 -213.44 -1.91 -1.38 16 25 C 0.14 0.96 12.09 84.46 1.02 1.98 16 26 C -0.25 -3.93 6.32 -20.26 -0.13 -4.06 16 27 C 0.03 0.43 7.39 22.84 0.17 0.60 16 28 C 0.11 2.47 5.04 86.68 0.44 2.91 16 29 C -0.12 -3.85 5.48 30.44 0.17 -3.68 16 30 C 0.16 5.99 2.55 45.53 0.12 6.11 16 31 H 0.03 1.07 7.95 -2.39 -0.02 1.05 16 32 H 0.24 14.47 8.31 -92.71 -0.77 13.70 16 33 H 0.01 0.78 7.21 -2.39 -0.02 0.77 16 34 H 0.01 0.28 7.77 -2.39 -0.02 0.26 16 35 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.08 2.61 8.11 -2.39 -0.02 2.59 16 37 H 0.09 2.21 8.08 -2.39 -0.02 2.19 16 38 H 0.09 2.56 7.02 -2.39 -0.02 2.54 16 39 H 0.13 3.05 8.06 -2.92 -0.02 3.02 16 40 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 41 H 0.25 -1.22 8.06 -2.91 -0.02 -1.25 16 42 H 0.16 1.77 7.03 -2.91 -0.02 1.75 16 43 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.11 2.03 4.72 -2.38 -0.01 2.02 16 45 H 0.08 2.40 7.62 -2.38 -0.02 2.38 16 46 H 0.05 1.66 8.13 -2.39 -0.02 1.64 16 Total: -1.00 -81.74 364.85 1.08 -80.65 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -0.89 Total: 7.83 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 5.52 Total: 5.90 kcal Atomic # 7 Polarization: -115.26 SS G_CDS: -5.50 Total: -120.76 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.07 Total: -21.01 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -81.74 1.08 -80.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036802849.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.395 kcal (2) G-P(sol) polarization free energy of solvation -81.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds