Wall clock time and date at job start Tue Mar 31 2020 23:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 119.99975 * 2 1 4 4 H 1.48509 * 109.46866 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47153 * 300.00057 * 3 2 1 6 6 H 1.48498 * 109.47170 * 60.00415 * 3 2 1 7 7 C 1.38815 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00220 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99885 * 0.02562 * 7 2 1 10 10 C 1.47775 * 125.96064 * 359.95465 * 9 7 2 11 11 C 1.55098 * 104.91643 * 201.62067 * 10 9 7 12 12 C 1.56121 * 101.08217 * 322.94138 * 11 10 9 13 13 H 1.08997 * 112.18789 * 157.72886 * 12 11 10 14 14 C 1.53607 * 106.54690 * 281.23683 * 12 11 10 15 15 N 1.46693 * 108.85622 * 160.21516 * 14 12 11 16 16 C 1.34778 * 120.97787 * 121.15069 * 15 14 12 17 17 O 1.21599 * 119.99947 * 3.34847 * 16 15 14 18 18 C 1.47510 * 120.00006 * 183.35700 * 16 15 14 19 19 C 1.41038 * 119.39610 * 129.12596 * 18 16 15 20 20 C 1.35188 * 121.65522 * 180.02562 * 19 18 16 21 21 C 1.41381 * 119.93265 * 359.97438 * 20 19 18 22 22 N 1.31929 * 134.39514 * 180.02562 * 21 20 19 23 23 N 1.39919 * 109.05905 * 179.97438 * 22 21 20 24 24 H 0.97004 * 124.98573 * 180.02562 * 23 22 21 25 25 C 1.33814 * 110.02843 * 359.97438 * 23 22 21 26 26 C 1.38536 * 107.83956 * 0.02562 * 25 23 22 27 27 C 1.38224 * 119.38909 * 308.85514 * 18 16 15 28 28 C 1.46528 * 118.04439 * 300.87797 * 15 14 12 29 29 C 1.51782 * 110.13449 * 54.04427 * 28 15 14 30 30 C 1.46251 * 125.96384 * 180.02562 * 9 7 2 31 31 H 1.09001 * 105.49801 * 71.44840 * 30 9 7 32 32 H 0.97007 * 119.99789 * 359.97438 * 1 2 3 33 33 H 1.09004 * 110.35441 * 320.47629 * 10 9 7 34 34 H 1.09000 * 110.35318 * 82.65105 * 10 9 7 35 35 H 1.08997 * 111.10324 * 80.88970 * 11 10 9 36 36 H 1.08998 * 111.10103 * 204.99229 * 11 10 9 37 37 H 1.09001 * 109.68521 * 40.38482 * 14 12 11 38 38 H 1.09005 * 109.63854 * 280.01032 * 14 12 11 39 39 H 1.07999 * 119.17285 * 359.97438 * 19 18 16 40 40 H 1.08002 * 120.03616 * 179.97438 * 20 19 18 41 41 H 1.08001 * 126.07824 * 179.97438 * 25 23 22 42 42 H 1.08003 * 120.32970 * 359.92467 * 27 18 16 43 43 H 1.09005 * 109.36035 * 174.24479 * 28 15 14 44 44 H 1.08994 * 109.35959 * 293.84114 * 28 15 14 45 45 H 1.08997 * 108.36589 * 79.84695 * 29 28 15 46 46 H 1.09001 * 108.36299 * 196.95172 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1442 -2.5415 -0.0013 11 6 -0.3964 -3.9693 0.5494 12 6 0.7953 -4.7514 -0.0873 13 1 1.0308 -5.6623 0.4631 14 6 0.4054 -5.0309 -1.5465 15 7 1.6206 -5.3230 -2.3144 16 6 1.7677 -6.4967 -2.9604 17 8 0.8613 -7.3073 -2.9626 18 6 3.0284 -6.7982 -3.6645 19 6 3.6849 -8.0214 -3.4157 20 6 4.8424 -8.3441 -4.0350 21 6 5.4230 -7.4447 -4.9585 22 7 6.5103 -7.4627 -5.7055 23 7 6.5794 -6.2741 -6.4405 24 1 7.2861 -6.0465 -7.0648 25 6 5.5270 -5.4979 -6.1567 26 6 4.7461 -6.1650 -5.2270 27 6 3.5416 -5.8790 -4.5602 28 6 2.6674 -4.2988 -2.3635 29 6 3.0605 -3.8857 -0.9569 30 6 1.9212 -3.7238 -0.0017 31 1 2.3443 -3.8541 0.9943 32 1 -0.4850 0.8401 0.0004 33 1 -0.6030 -1.7975 0.6500 34 1 -0.5351 -2.4498 -1.0147 35 1 -0.3397 -3.9858 1.6378 36 1 -1.3527 -4.3606 0.2022 37 1 -0.0907 -4.1566 -1.9679 38 1 -0.2669 -5.8880 -1.5883 39 1 3.2524 -8.7174 -2.7122 40 1 5.3232 -9.2880 -3.8245 41 1 5.3231 -4.5242 -6.5770 42 1 3.0240 -4.9490 -4.7440 43 1 3.5401 -4.6985 -2.8799 44 1 2.2964 -3.4288 -2.9052 45 1 3.7405 -4.6372 -0.5556 46 1 3.5974 -2.9388 -1.0144 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036802850.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:05 Heat of formation + Delta-G solvation = 102.226817 kcal Electronic energy + Delta-G solvation = -29876.976624 eV Core-core repulsion = 25962.215830 eV Total energy + Delta-G solvation = -3914.760795 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.58316 -40.20173 -38.39325 -36.79364 -35.17281 -32.95159 -32.33500 -31.75388 -30.99850 -29.77094 -28.96147 -27.55582 -25.62418 -24.61379 -24.01201 -22.59452 -22.38900 -20.97235 -20.14662 -19.83359 -18.48199 -18.28178 -17.39378 -16.71660 -16.27373 -16.04696 -15.30905 -15.24859 -14.98586 -14.67928 -14.27046 -14.17269 -14.04288 -13.92995 -13.50378 -13.08050 -12.91866 -12.74361 -12.46570 -12.11281 -12.02903 -11.76010 -11.67715 -11.36322 -11.20035 -11.01099 -10.80668 -10.65684 -10.54621 -10.48625 -10.14848 -10.08698 -9.92036 -9.65552 -9.62173 -9.49036 -9.05998 -8.65455 -8.23879 -7.82980 -6.82232 -5.69886 -3.08591 0.27261 1.40240 2.10280 2.35951 2.86628 3.24205 3.35942 3.41482 3.44138 3.66789 3.98074 4.30925 4.44934 4.65082 4.77164 4.92128 5.08687 5.18558 5.24868 5.28943 5.33157 5.36912 5.48317 5.54169 5.56964 5.74064 5.85349 5.86745 5.95860 6.08062 6.13899 6.16221 6.23192 6.31125 6.33671 6.37312 6.45426 6.53734 6.61628 6.69879 6.70574 6.77524 6.95336 7.00503 7.26501 7.49922 7.61465 7.70466 7.83955 8.31786 8.36552 9.18628 9.81142 10.48119 11.36155 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013279 B = 0.003340 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.022212 B = 8382.414749 C = 9955.860343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.009 4.009 3 Si 0.910 3.090 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.220 4.220 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.156 3.844 11 C -0.143 4.143 12 C -0.106 4.106 13 H 0.077 0.923 14 C 0.121 3.879 15 N -0.595 5.595 16 C 0.561 3.439 17 O -0.547 6.547 18 C -0.153 4.153 19 C -0.033 4.033 20 C -0.112 4.112 21 C 0.118 3.882 22 N -0.312 5.312 23 N -0.424 5.424 24 H 0.444 0.556 25 C 0.099 3.901 26 C -0.215 4.215 27 C -0.001 4.001 28 C 0.107 3.893 29 C -0.135 4.135 30 C 0.172 3.828 31 H 0.008 0.992 32 H 0.251 0.749 33 H 0.098 0.902 34 H 0.014 0.986 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.193 0.807 42 H 0.135 0.865 43 H 0.083 0.917 44 H 0.071 0.929 45 H 0.050 0.950 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.578 -11.473 -10.829 18.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.205 4.205 3 Si 0.741 3.259 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.348 4.348 8 H 0.096 0.904 9 N -0.318 5.318 10 C 0.032 3.968 11 C -0.182 4.182 12 C -0.126 4.126 13 H 0.095 0.905 14 C -0.001 4.001 15 N -0.326 5.326 16 C 0.350 3.650 17 O -0.426 6.426 18 C -0.158 4.158 19 C -0.056 4.056 20 C -0.133 4.133 21 C -0.036 4.036 22 N -0.140 5.140 23 N -0.123 5.123 24 H 0.289 0.711 25 C -0.060 4.060 26 C -0.225 4.225 27 C -0.022 4.022 28 C -0.015 4.015 29 C -0.175 4.175 30 C 0.065 3.935 31 H 0.025 0.975 32 H 0.062 0.938 33 H 0.116 0.884 34 H 0.032 0.968 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.210 0.790 42 H 0.152 0.848 43 H 0.101 0.899 44 H 0.089 0.911 45 H 0.069 0.931 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 10.143 -12.352 -11.149 19.487 hybrid contribution 0.282 1.706 -0.179 1.738 sum 10.425 -10.646 -11.328 18.717 Atomic orbital electron populations 1.69857 1.04856 1.24671 1.57412 1.24751 0.95654 0.97552 1.02539 0.86070 0.78648 0.83940 0.77249 1.20594 1.21860 1.21803 1.19014 0.90446 0.82297 1.43041 0.90444 1.44493 1.01805 0.99279 1.86270 1.21908 0.84657 0.91703 0.98541 1.23292 0.96037 0.98980 0.99904 1.22416 0.97366 0.97682 0.95164 0.90501 1.21803 0.85952 1.01754 0.90570 1.47924 1.19589 1.15688 1.49388 1.18222 0.86837 0.81239 0.78744 1.90763 1.41927 1.47664 1.62247 1.19484 0.97416 0.96625 1.02287 1.20515 0.93216 0.94514 0.97326 1.19714 0.96678 0.99127 0.97787 1.21043 0.92109 0.94638 0.95841 1.77651 1.21167 1.01754 1.13424 1.46316 1.19640 1.13368 1.32962 0.71114 1.22870 0.88607 0.97477 0.97012 1.19494 1.00246 0.97251 1.05487 1.20725 0.91807 0.97340 0.92293 1.21597 0.90575 0.90625 0.98706 1.21224 0.99601 1.01767 0.94869 1.19430 0.91652 0.86630 0.95835 0.97453 0.93818 0.88435 0.96762 0.91954 0.92012 0.90341 0.89650 0.84874 0.84923 0.79018 0.84772 0.89868 0.91095 0.93135 0.90048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.83 10.18 55.49 0.56 -25.27 16 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 3 Si 0.91 21.21 29.55 -169.99 -5.02 16.19 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 7 C -0.22 -5.72 9.59 -15.06 -0.14 -5.86 16 8 H 0.08 1.95 7.02 -52.49 -0.37 1.58 16 9 N -0.59 -14.14 3.32 -165.67 -0.55 -14.69 16 10 C 0.16 3.61 5.35 -2.23 -0.01 3.60 16 11 C -0.14 -2.64 6.47 -23.95 -0.15 -2.79 16 12 C -0.11 -1.87 3.70 -88.80 -0.33 -2.20 16 13 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 14 C 0.12 2.05 5.56 -3.62 -0.02 2.03 16 15 N -0.59 -9.45 2.94 -175.11 -0.51 -9.96 16 16 C 0.56 8.96 7.18 -12.48 -0.09 8.88 16 17 O -0.55 -10.34 16.47 5.28 0.09 -10.26 16 18 C -0.15 -2.05 5.01 -105.06 -0.53 -2.57 16 19 C -0.03 -0.40 9.55 -39.61 -0.38 -0.78 16 20 C -0.11 -1.27 10.05 -39.47 -0.40 -1.67 16 21 C 0.12 1.42 7.49 -82.97 -0.62 0.80 16 22 N -0.31 -3.55 12.69 33.30 0.42 -3.13 16 23 N -0.42 -3.07 7.17 30.87 0.22 -2.85 16 24 H 0.44 1.46 8.96 -182.73 -1.64 -0.18 16 25 C 0.10 0.70 12.09 -16.58 -0.20 0.50 16 26 C -0.21 -2.29 6.32 -105.24 -0.66 -2.95 16 27 C 0.00 -0.01 7.39 -38.69 -0.29 -0.29 16 28 C 0.11 1.61 5.41 -4.64 -0.03 1.58 16 29 C -0.13 -2.29 5.62 -29.05 -0.16 -2.46 16 30 C 0.17 3.40 2.64 -69.93 -0.18 3.22 16 31 H 0.01 0.17 8.07 -51.93 -0.42 -0.25 16 32 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 33 H 0.10 2.57 6.09 -51.93 -0.32 2.25 16 34 H 0.01 0.35 7.10 -51.93 -0.37 -0.02 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.06 1.01 7.98 -51.93 -0.41 0.60 16 37 H 0.08 1.44 6.50 -51.93 -0.34 1.10 16 38 H 0.09 1.44 7.01 -51.93 -0.36 1.08 16 39 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 40 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 41 H 0.19 0.54 8.06 -52.49 -0.42 0.12 16 42 H 0.13 1.36 7.08 -52.48 -0.37 0.99 16 43 H 0.08 1.06 4.57 -51.93 -0.24 0.82 16 44 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.08 1.48 6.64 -51.93 -0.34 1.14 16 LS Contribution 360.60 15.07 5.43 5.43 Total: -1.00 -33.50 360.60 -10.92 -44.43 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -7.27 Total: 1.41 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -4.29 Total: -1.31 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: 0.15 Total: -55.89 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.26 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.50 -10.92 -44.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036802850.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.654 kcal (2) G-P(sol) polarization free energy of solvation -33.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds