Wall clock time and date at job start Tue Mar 31 2020 23:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00543 * 2 1 4 4 H 1.48500 * 109.46980 * 239.99877 * 3 2 1 5 5 H 1.48495 * 109.46735 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47141 * 119.99946 * 3 2 1 7 7 C 1.38818 * 119.99568 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00164 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00197 * 0.02562 * 7 2 1 10 10 C 1.47435 * 126.05187 * 0.02562 * 9 7 2 11 11 C 1.54500 * 107.14823 * 181.57428 * 10 9 7 12 12 C 1.55514 * 102.19520 * 23.34311 * 11 10 9 13 13 H 1.09001 * 112.35818 * 202.10732 * 12 11 10 14 14 C 1.52733 * 106.81958 * 77.70158 * 12 11 10 15 15 N 1.46521 * 110.47026 * 202.66903 * 14 12 11 16 16 C 1.34778 * 121.00906 * 235.55505 * 15 14 12 17 17 O 1.21787 * 120.00513 * 4.84021 * 16 15 14 18 18 C 1.41698 * 119.99729 * 184.83441 * 16 15 14 19 19 C 1.39183 * 125.87656 * 64.49543 * 18 16 15 20 20 C 1.38092 * 107.67997 * 179.97438 * 19 18 16 21 21 C 1.39499 * 107.56835 * 0.02562 * 20 19 18 22 22 C 1.40621 * 132.41513 * 180.02562 * 21 20 19 23 23 C 1.36296 * 119.15890 * 179.97438 * 22 21 20 24 24 C 1.39966 * 120.04113 * 359.97438 * 23 22 21 25 25 N 1.30648 * 120.99193 * 0.02562 * 24 23 22 26 26 N 1.37157 * 108.20637 * 359.97438 * 21 20 19 27 27 C 1.47146 * 117.97358 * 55.28912 * 15 14 12 28 28 C 1.53043 * 107.68356 * 302.82623 * 27 15 14 29 29 C 1.46466 * 126.05616 * 179.97438 * 9 7 2 30 30 H 1.08997 * 108.34264 * 269.16798 * 29 9 7 31 31 H 0.97007 * 119.99667 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.90184 * 300.95267 * 10 9 7 33 33 H 1.09000 * 109.90370 * 62.01534 * 10 9 7 34 34 H 1.08999 * 110.77971 * 141.11405 * 11 10 9 35 35 H 1.09000 * 110.78324 * 264.54958 * 11 10 9 36 36 H 1.08997 * 109.25106 * 82.33542 * 14 12 11 37 37 H 1.09004 * 109.17289 * 322.95443 * 14 12 11 38 38 H 1.08000 * 126.15989 * 359.74410 * 19 18 16 39 39 H 1.07998 * 126.21137 * 180.02562 * 20 19 18 40 40 H 1.07995 * 120.41566 * 359.93829 * 22 21 20 41 41 H 1.08003 * 119.97647 * 180.02562 * 23 22 21 42 42 H 1.07999 * 119.50266 * 180.02562 * 24 23 22 43 43 H 1.09001 * 109.81470 * 62.37739 * 27 15 14 44 44 H 1.08995 * 109.81321 * 183.28019 * 27 15 14 45 45 H 1.08997 * 109.14713 * 174.82169 * 28 27 15 46 46 H 1.09002 * 109.15155 * 293.98432 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0101 -1.2023 0.0005 8 1 3.0902 -1.2024 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1407 -2.5435 -0.0005 11 6 -0.4382 -4.0590 0.0405 12 6 0.8658 -4.6331 0.6637 13 1 1.0090 -5.6875 0.4275 14 6 0.7939 -4.3632 2.1653 15 7 2.1371 -4.3627 2.7507 16 6 2.4458 -5.1749 3.7810 17 8 1.6310 -5.9862 4.1823 18 6 3.7186 -5.0848 4.3974 19 6 4.2094 -3.9874 5.0987 20 6 5.4799 -4.3041 5.5373 21 6 5.7653 -5.5983 5.1019 22 6 6.8939 -6.4232 5.2547 23 6 6.8838 -7.6707 4.7058 24 6 5.7599 -8.1171 4.0012 25 7 4.7094 -7.3539 3.8569 26 7 4.6798 -6.0653 4.4057 27 6 3.1404 -3.4528 2.1755 28 6 3.2660 -3.7811 0.6860 29 6 1.9198 -3.7268 0.0005 30 1 2.0452 -4.0464 -1.0339 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5659 -2.0580 0.8778 33 1 -0.5597 -2.1048 -0.9061 34 1 -1.2934 -4.2680 0.6831 35 1 -0.6040 -4.4480 -0.9642 36 1 0.1928 -5.1379 2.6413 37 1 0.3266 -3.3928 2.3327 38 1 3.6915 -3.0546 5.2662 39 1 6.1338 -3.6657 6.1129 40 1 7.7578 -6.0723 5.7995 41 1 7.7433 -8.3155 4.8155 42 1 5.7611 -9.1074 3.5702 43 1 2.8166 -2.4195 2.3003 44 1 4.1006 -3.6021 2.6691 45 1 3.9355 -3.0605 0.2163 46 1 3.6839 -4.7816 0.5744 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036838148.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:57 Heat of formation + Delta-G solvation = 115.371027 kcal Electronic energy + Delta-G solvation = -30454.799437 eV Core-core repulsion = 26540.608617 eV Total energy + Delta-G solvation = -3914.190819 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.10202 -39.96153 -38.27454 -37.20936 -34.93187 -33.47322 -32.79986 -31.60986 -30.70020 -29.65524 -28.79658 -27.46703 -25.63129 -24.68123 -23.92229 -22.79245 -22.50500 -21.37642 -20.16765 -19.89777 -18.63825 -17.60774 -17.23224 -16.54957 -16.32419 -16.10456 -15.66450 -15.37937 -15.10567 -14.59535 -14.46982 -13.92370 -13.90496 -13.72467 -13.44525 -13.20980 -12.84508 -12.60490 -12.43251 -12.28340 -12.21365 -12.08542 -11.50653 -11.39788 -11.08047 -11.02769 -10.97090 -10.76153 -10.71841 -10.63029 -10.18245 -10.03044 -9.87605 -9.68438 -9.60782 -9.59190 -8.98278 -8.59638 -8.17293 -7.82989 -6.81465 -5.71351 -3.04077 0.29108 0.99822 1.66921 2.39857 2.97675 3.08476 3.38988 3.43841 3.45325 3.45697 4.14367 4.28381 4.41083 4.48695 4.67962 4.83107 5.06429 5.20534 5.22617 5.30725 5.39379 5.46105 5.55672 5.56483 5.58371 5.68256 5.74577 5.83736 5.89381 5.94171 6.03367 6.08455 6.17350 6.32185 6.33260 6.37940 6.46661 6.50153 6.58456 6.63115 6.73678 6.81294 6.92424 6.98078 7.47178 7.56580 7.62540 7.75199 7.82257 8.25108 8.38365 9.20948 9.83126 10.51174 11.40634 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014915 B = 0.003602 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.894688 B = 7770.644357 C = 8724.160522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.006 4.006 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.225 4.225 8 H 0.078 0.922 9 N -0.594 5.594 10 C 0.176 3.824 11 C -0.143 4.143 12 C -0.115 4.115 13 H 0.075 0.925 14 C 0.128 3.872 15 N -0.584 5.584 16 C 0.587 3.413 17 O -0.541 6.541 18 C 0.007 3.993 19 C -0.119 4.119 20 C -0.159 4.159 21 C -0.018 4.018 22 C -0.006 4.006 23 C -0.211 4.211 24 C 0.130 3.870 25 N -0.263 5.263 26 N -0.225 5.225 27 C 0.114 3.886 28 C -0.126 4.126 29 C 0.171 3.829 30 H 0.018 0.982 31 H 0.252 0.748 32 H 0.047 0.953 33 H 0.042 0.958 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.163 0.837 39 H 0.156 0.844 40 H 0.153 0.847 41 H 0.148 0.852 42 H 0.193 0.807 43 H 0.093 0.907 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.370 -12.989 9.102 20.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.202 4.202 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.353 4.353 8 H 0.096 0.904 9 N -0.320 5.320 10 C 0.052 3.948 11 C -0.182 4.182 12 C -0.136 4.136 13 H 0.093 0.907 14 C 0.006 3.994 15 N -0.316 5.316 16 C 0.374 3.626 17 O -0.419 6.419 18 C -0.113 4.113 19 C -0.143 4.143 20 C -0.185 4.185 21 C -0.128 4.128 22 C -0.033 4.033 23 C -0.233 4.233 24 C -0.063 4.063 25 N -0.071 5.071 26 N 0.013 4.987 27 C -0.008 4.008 28 C -0.166 4.166 29 C 0.063 3.937 30 H 0.036 0.964 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.180 0.820 39 H 0.173 0.827 40 H 0.171 0.829 41 H 0.165 0.835 42 H 0.210 0.790 43 H 0.111 0.889 44 H 0.091 0.909 45 H 0.094 0.906 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.837 -13.450 8.709 19.922 hybrid contribution 1.341 0.939 0.224 1.652 sum 13.178 -12.511 8.933 20.247 Atomic orbital electron populations 1.69944 1.04846 1.25075 1.56848 1.24761 0.95613 0.97471 1.02375 0.86281 0.78512 0.83600 0.77856 1.21307 1.21710 1.21162 1.18909 0.90323 0.82207 1.43882 0.90449 1.44331 1.01493 0.99350 1.86811 1.21246 0.84266 0.88288 1.01015 1.23050 0.95926 0.99714 0.99468 1.22552 0.97866 0.98523 0.94613 0.90685 1.21468 0.82321 1.03054 0.92590 1.48001 1.13576 1.39008 1.30989 1.15739 0.85540 0.81107 0.80213 1.90826 1.50784 1.36542 1.63746 1.19096 0.92486 0.88413 1.11292 1.21351 0.95490 0.97218 1.00234 1.20991 0.97617 0.93690 1.06216 1.19338 0.90638 0.97278 1.05499 1.20883 0.95707 0.92117 0.94601 1.21370 1.00588 0.97922 1.03456 1.24024 0.89053 0.99250 0.93932 1.75934 1.24459 0.89789 1.16895 1.45424 1.11751 1.08169 1.33393 1.21834 0.90761 0.94731 0.93473 1.21571 0.99193 1.00504 0.95292 1.20265 0.90724 0.87153 0.95532 0.96446 0.93752 0.93458 0.93979 0.91971 0.92225 0.90183 0.89978 0.81966 0.82687 0.82911 0.83471 0.79024 0.88879 0.90897 0.90642 0.93104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.10 10.38 55.49 0.58 -25.52 16 2 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 3 Si 0.91 21.33 29.55 -169.99 -5.02 16.30 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.23 -5.81 8.95 -15.06 -0.13 -5.95 16 8 H 0.08 1.92 6.71 -52.48 -0.35 1.56 16 9 N -0.59 -14.14 3.08 -164.47 -0.51 -14.65 16 10 C 0.18 4.12 4.62 -2.74 -0.01 4.11 16 11 C -0.14 -2.67 6.32 -24.61 -0.16 -2.82 16 12 C -0.12 -2.12 3.78 -88.89 -0.34 -2.45 16 13 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 14 C 0.13 2.40 5.43 -4.17 -0.02 2.38 16 15 N -0.58 -10.68 2.94 -176.66 -0.52 -11.20 16 16 C 0.59 11.10 7.38 -14.94 -0.11 10.99 16 17 O -0.54 -11.84 16.52 5.11 0.08 -11.75 16 18 C 0.01 0.11 5.15 -83.74 -0.43 -0.32 16 19 C -0.12 -1.60 9.58 -39.28 -0.38 -1.98 16 20 C -0.16 -1.80 10.92 -39.17 -0.43 -2.22 16 21 C -0.02 -0.22 6.80 -84.11 -0.57 -0.79 16 22 C -0.01 -0.05 10.12 -39.38 -0.40 -0.45 16 23 C -0.21 -1.52 10.04 -39.63 -0.40 -1.92 16 24 C 0.13 1.21 11.29 -17.41 -0.20 1.01 16 25 N -0.26 -3.81 11.92 30.61 0.36 -3.44 16 26 N -0.23 -3.45 4.01 -8.28 -0.03 -3.48 16 27 C 0.11 2.00 6.03 -3.67 -0.02 1.97 16 28 C -0.13 -2.28 5.18 -27.63 -0.14 -2.42 16 29 C 0.17 3.45 2.89 -68.34 -0.20 3.25 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.05 1.22 6.94 -51.93 -0.36 0.86 16 33 H 0.04 1.10 7.56 -51.93 -0.39 0.71 16 34 H 0.06 1.06 7.97 -51.93 -0.41 0.64 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.08 1.51 6.99 -51.93 -0.36 1.14 16 37 H 0.08 1.68 6.73 -51.93 -0.35 1.33 16 38 H 0.16 1.93 8.06 -52.49 -0.42 1.51 16 39 H 0.16 1.23 8.06 -52.49 -0.42 0.80 16 40 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 41 H 0.15 0.52 8.06 -52.48 -0.42 0.10 16 42 H 0.19 0.98 8.06 -52.49 -0.42 0.56 16 43 H 0.09 1.82 7.39 -51.93 -0.38 1.43 16 44 H 0.07 1.16 5.73 -51.93 -0.30 0.86 16 45 H 0.08 1.37 7.05 -51.93 -0.37 1.01 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 363.92 15.07 5.48 5.48 Total: -1.00 -33.93 363.92 -9.82 -43.75 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -6.22 Total: 2.37 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: -4.03 Total: 2.14 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: -0.12 Total: -58.29 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.08 Total: -11.75 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.93 -9.82 -43.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036838148.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.126 kcal (2) G-P(sol) polarization free energy of solvation -33.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds