Wall clock time and date at job start Tue Mar 31 2020 23:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86802 * 119.99970 * 2 1 4 4 H 1.48496 * 109.47138 * 274.98675 * 3 2 1 5 5 H 1.48493 * 109.47065 * 34.98873 * 3 2 1 6 6 H 1.48505 * 109.46990 * 154.98964 * 3 2 1 7 7 C 1.38812 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99601 * 187.56761 * 7 2 1 9 9 N 1.36935 * 120.00416 * 7.57359 * 7 2 1 10 10 C 1.48158 * 126.40177 * 356.00172 * 9 7 2 11 11 C 1.55289 * 107.04489 * 175.08055 * 10 9 7 12 12 C 1.53741 * 101.84114 * 337.52458 * 11 10 9 13 13 H 1.09002 * 111.30975 * 280.15202 * 12 11 10 14 14 C 1.52242 * 114.74401 * 152.75190 * 12 11 10 15 15 N 1.47719 * 106.36733 * 190.42915 * 14 12 11 16 16 C 1.34774 * 119.68343 * 232.03486 * 15 14 12 17 17 O 1.21795 * 119.99707 * 354.13190 * 16 15 14 18 18 C 1.41692 * 120.00472 * 174.13446 * 16 15 14 19 19 C 1.39187 * 125.87857 * 217.00475 * 18 16 15 20 20 C 1.38087 * 107.68023 * 179.83306 * 19 18 16 21 21 C 1.39500 * 107.56694 * 0.41945 * 20 19 18 22 22 C 1.40619 * 132.41674 * 179.73466 * 21 20 19 23 23 C 1.36290 * 119.16743 * 180.02562 * 22 21 20 24 24 C 1.39976 * 120.03236 * 359.95419 * 23 22 21 25 25 N 1.30640 * 120.99705 * 0.04690 * 24 23 22 26 26 N 1.37165 * 108.20722 * 359.73565 * 21 20 19 27 27 C 1.46601 * 120.63518 * 52.05733 * 15 14 12 28 28 C 1.53955 * 110.57249 * 312.17359 * 27 15 14 29 29 C 1.45459 * 126.40834 * 175.69763 * 9 7 2 30 30 H 1.09005 * 109.26580 * 93.79754 * 29 9 7 31 31 H 0.97005 * 120.00528 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.91991 * 294.42576 * 10 9 7 33 33 H 1.08996 * 109.92269 * 55.73103 * 10 9 7 34 34 H 1.09006 * 110.95432 * 95.65836 * 11 10 9 35 35 H 1.08996 * 110.95918 * 219.38156 * 11 10 9 36 36 H 1.09006 * 110.06457 * 309.63786 * 14 12 11 37 37 H 1.08997 * 110.06856 * 71.21468 * 14 12 11 38 38 H 1.08007 * 126.15737 * 359.97147 * 19 18 16 39 39 H 1.07993 * 126.21282 * 180.15470 * 20 19 18 40 40 H 1.08007 * 120.41662 * 359.97438 * 22 21 20 41 41 H 1.08001 * 119.98357 * 179.97438 * 23 22 21 42 42 H 1.08003 * 119.49799 * 180.02562 * 24 23 22 43 43 H 1.08993 * 109.25737 * 72.45758 * 27 15 14 44 44 H 1.09005 * 109.24949 * 191.92988 * 27 15 14 45 45 H 1.08998 * 109.88055 * 170.52051 * 28 27 15 46 46 H 1.09007 * 109.88157 * 291.52314 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1073 -1.3947 5 1 1.5043 2.6199 0.8028 6 1 3.5965 1.4120 0.5919 7 6 2.0101 -1.2022 -0.0005 8 1 3.0831 -1.2063 0.1226 9 7 1.3345 -2.3828 -0.1574 10 6 -0.1346 -2.5491 -0.2538 11 6 -0.4045 -4.0495 -0.5494 12 6 0.9336 -4.4963 -1.1606 13 1 1.0069 -4.2058 -2.2087 14 6 1.2583 -5.9719 -0.9740 15 7 2.6648 -6.1446 -1.3911 16 6 2.9818 -7.0958 -2.2918 17 8 2.1308 -7.8772 -2.6773 18 6 4.3051 -7.1869 -2.7901 19 6 4.6650 -7.5155 -4.0938 20 6 6.0437 -7.4905 -4.1673 21 6 6.5267 -7.1550 -2.9024 22 6 7.8286 -6.9908 -2.3971 23 6 7.9951 -6.6530 -1.0872 24 6 6.8783 -6.4728 -0.2628 25 7 5.6670 -6.6244 -0.7282 26 7 5.4532 -6.9716 -2.0684 27 6 3.7192 -5.2916 -0.8345 28 6 3.3008 -3.8109 -0.8861 29 6 1.9251 -3.7076 -0.2666 30 1 1.9585 -4.1690 0.7204 31 1 -0.4851 0.8400 0.0004 32 1 -0.6030 -2.2662 0.6890 33 1 -0.5255 -1.9347 -1.0648 34 1 -0.6150 -4.5962 0.3699 35 1 -1.2182 -4.1656 -1.2652 36 1 1.1418 -6.2509 0.0733 37 1 0.6052 -6.5806 -1.5994 38 1 3.9877 -7.7462 -4.9029 39 1 6.6397 -7.6977 -5.0437 40 1 8.6860 -7.1315 -3.0387 41 1 8.9892 -6.5240 -0.6852 42 1 7.0202 -6.2048 0.7738 43 1 3.9034 -5.5773 0.2011 44 1 4.6333 -5.4267 -1.4127 45 1 4.0105 -3.2053 -0.3225 46 1 3.2645 -3.4718 -1.9214 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036838149.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:01 Heat of formation + Delta-G solvation = 147.915624 kcal Electronic energy + Delta-G solvation = -30395.695188 eV Core-core repulsion = 26482.915609 eV Total energy + Delta-G solvation = -3912.779580 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.43158 -39.93659 -38.37599 -37.30451 -35.41683 -33.78683 -32.58063 -31.53887 -30.69629 -30.06736 -28.84241 -27.96876 -25.21161 -24.87669 -23.90487 -22.70583 -22.36523 -21.40224 -20.10355 -19.99865 -19.29062 -17.92553 -17.53914 -16.62198 -16.37286 -16.31451 -15.71175 -15.51032 -15.04875 -14.69332 -14.43247 -14.02814 -13.86940 -13.77248 -13.51575 -13.19618 -12.91305 -12.82259 -12.57621 -12.44528 -12.40933 -12.12993 -11.67250 -11.49484 -11.38090 -11.07927 -10.89246 -10.83085 -10.60686 -10.37756 -10.16945 -10.04155 -9.88487 -9.73186 -9.59807 -9.41089 -9.14329 -8.59243 -8.43633 -7.95863 -6.82953 -5.72992 -3.04011 0.16687 0.79904 1.59872 2.15505 2.95277 3.09117 3.31623 3.38735 3.43616 3.45995 3.96379 4.21217 4.32953 4.49046 4.58292 4.72757 4.97467 5.10650 5.13740 5.18587 5.29988 5.36556 5.42039 5.48954 5.55990 5.64400 5.65589 5.76648 5.80240 5.86011 5.92425 6.02008 6.08906 6.20066 6.25203 6.29329 6.35305 6.40632 6.48622 6.57286 6.64854 6.67234 6.88223 7.09442 7.29980 7.54085 7.55752 7.63768 7.80966 8.22975 8.24453 9.19305 9.83182 10.52315 11.40263 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013345 B = 0.003610 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.586552 B = 7755.439815 C = 9084.143865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.595 5.595 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.123 4.123 13 H 0.079 0.921 14 C 0.127 3.873 15 N -0.594 5.594 16 C 0.585 3.415 17 O -0.542 6.542 18 C -0.010 4.010 19 C -0.091 4.091 20 C -0.167 4.167 21 C -0.004 4.004 22 C -0.012 4.012 23 C -0.200 4.200 24 C 0.122 3.878 25 N -0.257 5.257 26 N -0.240 5.240 27 C 0.112 3.888 28 C -0.132 4.132 29 C 0.170 3.830 30 H 0.017 0.983 31 H 0.252 0.748 32 H 0.039 0.961 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.163 0.837 39 H 0.156 0.844 40 H 0.154 0.846 41 H 0.149 0.851 42 H 0.197 0.803 43 H 0.072 0.928 44 H 0.091 0.909 45 H 0.072 0.928 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.888 -15.634 -3.935 22.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.319 5.319 10 C 0.053 3.947 11 C -0.174 4.174 12 C -0.144 4.144 13 H 0.097 0.903 14 C 0.005 3.995 15 N -0.325 5.325 16 C 0.374 3.626 17 O -0.420 6.420 18 C -0.128 4.128 19 C -0.116 4.116 20 C -0.193 4.193 21 C -0.115 4.115 22 C -0.039 4.039 23 C -0.222 4.222 24 C -0.069 4.069 25 N -0.065 5.065 26 N -0.004 5.004 27 C -0.011 4.011 28 C -0.171 4.171 29 C 0.062 3.938 30 H 0.035 0.965 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.181 0.819 39 H 0.174 0.826 40 H 0.171 0.829 41 H 0.167 0.833 42 H 0.213 0.787 43 H 0.090 0.910 44 H 0.108 0.892 45 H 0.091 0.909 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 14.332 -15.648 -3.425 21.494 hybrid contribution 1.441 1.107 -0.170 1.825 sum 15.773 -14.541 -3.596 21.752 Atomic orbital electron populations 1.69955 1.04907 1.25027 1.56693 1.24792 0.95632 0.97552 1.02292 0.86177 0.78696 0.83907 0.77488 1.21685 1.21762 1.20711 1.18977 0.91090 0.82563 1.42773 0.90503 1.44205 1.01813 1.00645 1.85257 1.21527 0.84002 0.88766 1.00434 1.22710 0.95464 0.99800 0.99421 1.22566 0.97805 0.93401 1.00579 0.90266 1.21652 0.80600 0.97044 1.00184 1.48297 1.09176 1.33607 1.41451 1.15837 0.86138 0.81308 0.79338 1.90843 1.49743 1.41624 1.59796 1.19470 0.84779 1.16246 0.92256 1.21283 0.95468 1.00817 0.94042 1.21026 0.94426 1.08525 0.95299 1.19395 0.88409 1.11101 0.92604 1.20907 0.94764 0.92581 0.95604 1.21405 1.00526 1.05909 0.94401 1.24186 0.88323 0.92972 1.01375 1.76421 1.22140 1.16373 0.91594 1.45907 1.06602 1.42736 1.05153 1.22571 0.89181 0.89983 0.99384 1.21920 0.99196 0.94071 1.01903 1.20471 0.91014 0.87690 0.94637 0.96546 0.93756 0.94289 0.92852 0.92278 0.91977 0.91276 0.89117 0.81920 0.82636 0.82858 0.83321 0.78695 0.90995 0.89173 0.90933 0.91846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.04 10.49 55.49 0.58 -26.46 16 2 C -0.01 -0.18 5.48 -17.43 -0.10 -0.27 16 3 Si 0.91 22.04 29.56 -169.99 -5.02 17.01 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.23 -6.23 9.85 -15.06 -0.15 -6.38 16 8 H 0.08 2.04 7.28 -52.48 -0.38 1.66 16 9 N -0.59 -15.15 3.35 -163.46 -0.55 -15.69 16 10 C 0.18 4.33 5.46 -1.92 -0.01 4.32 16 11 C -0.14 -2.59 6.54 -25.13 -0.16 -2.75 16 12 C -0.12 -2.32 2.85 -89.53 -0.26 -2.57 16 13 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 14 C 0.13 2.13 5.93 -3.76 -0.02 2.11 16 15 N -0.59 -10.00 3.00 -175.86 -0.53 -10.53 16 16 C 0.58 10.12 7.38 -14.94 -0.11 10.01 16 17 O -0.54 -10.55 16.38 5.10 0.08 -10.47 16 18 C -0.01 -0.16 5.98 -83.74 -0.50 -0.66 16 19 C -0.09 -1.13 10.69 -39.28 -0.42 -1.55 16 20 C -0.17 -1.67 10.92 -39.17 -0.43 -2.10 16 21 C 0.00 -0.04 6.80 -84.11 -0.57 -0.62 16 22 C -0.01 -0.09 10.11 -39.39 -0.40 -0.48 16 23 C -0.20 -1.23 10.04 -39.63 -0.40 -1.63 16 24 C 0.12 0.96 11.29 -17.41 -0.20 0.77 16 25 N -0.26 -3.08 7.22 30.61 0.22 -2.85 16 26 N -0.24 -3.19 3.04 -8.28 -0.03 -3.21 16 27 C 0.11 1.78 4.42 -3.49 -0.02 1.76 16 28 C -0.13 -2.44 5.50 -27.13 -0.15 -2.59 16 29 C 0.17 3.55 2.55 -68.30 -0.17 3.38 16 30 H 0.02 0.37 7.89 -51.93 -0.41 -0.04 16 31 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.04 1.04 7.80 -51.93 -0.40 0.63 16 33 H 0.05 1.45 7.21 -51.93 -0.37 1.07 16 34 H 0.06 1.04 8.12 -51.93 -0.42 0.62 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 37 H 0.09 1.53 7.04 -51.93 -0.37 1.16 16 38 H 0.16 1.76 8.06 -52.48 -0.42 1.33 16 39 H 0.16 1.04 8.06 -52.49 -0.42 0.61 16 40 H 0.15 0.58 8.06 -52.48 -0.42 0.16 16 41 H 0.15 0.43 8.06 -52.49 -0.42 0.00 16 42 H 0.20 0.83 8.06 -52.48 -0.42 0.40 16 43 H 0.07 1.10 7.51 -51.93 -0.39 0.71 16 44 H 0.09 1.38 3.50 -83.16 -0.29 1.09 16 45 H 0.07 1.35 7.64 -51.93 -0.40 0.95 16 46 H 0.06 1.26 8.13 -51.93 -0.42 0.84 16 LS Contribution 361.22 15.07 5.44 5.44 Total: -1.00 -34.79 361.22 -10.23 -45.01 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -6.37 Total: 0.99 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -4.06 Total: 0.76 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: -0.30 Total: -58.74 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.08 Total: -10.47 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.79 -10.23 -45.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036838149.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.930 kcal (2) G-P(sol) polarization free energy of solvation -34.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds