Wall clock time and date at job start Tue Mar 31 2020 23:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86795 * 120.00115 * 2 1 4 4 H 1.48498 * 109.47226 * 85.55864 * 3 2 1 5 5 H 1.48497 * 109.47477 * 325.55371 * 3 2 1 6 6 H 1.48500 * 109.47397 * 205.55374 * 3 2 1 7 7 C 1.38811 * 119.99864 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00329 * 164.97896 * 7 2 1 9 9 N 1.36937 * 120.00013 * 344.97070 * 7 2 1 10 10 C 1.46865 * 125.34068 * 353.98180 * 9 7 2 11 11 C 1.54458 * 106.66826 * 195.32978 * 10 9 7 12 12 C 1.53384 * 102.53495 * 332.27167 * 11 10 9 13 13 H 1.08992 * 105.70008 * 277.66430 * 12 11 10 14 14 C 1.49274 * 114.28301 * 161.97000 * 12 11 10 15 15 N 1.45265 * 114.71979 * 258.59012 * 14 12 11 16 16 C 1.34778 * 120.15603 * 143.66864 * 15 14 12 17 17 O 1.21655 * 120.00008 * 175.05256 * 16 15 14 18 18 C 1.46940 * 119.99833 * 355.05757 * 16 15 14 19 19 C 1.36475 * 126.72773 * 27.33774 * 18 16 15 20 20 N 1.35356 * 109.77547 * 179.97438 * 19 18 16 21 21 H 0.96997 * 124.82985 * 180.02562 * 20 19 18 22 22 C 1.37864 * 110.35008 * 0.02562 * 20 19 18 23 23 C 1.39228 * 133.47656 * 180.02562 * 22 20 19 24 24 C 1.38334 * 118.29570 * 179.97438 * 23 22 20 25 25 C 1.38597 * 119.64720 * 359.97438 * 24 23 22 26 26 N 1.31636 * 121.19164 * 0.02562 * 25 24 23 27 27 C 1.32695 * 121.42395 * 359.71893 * 26 25 24 28 28 C 1.46821 * 119.53755 * 323.90831 * 15 14 12 29 29 C 1.52958 * 107.40437 * 54.77283 * 28 15 14 30 30 C 1.48017 * 125.33586 * 173.67117 * 9 7 2 31 31 H 1.08991 * 110.22833 * 303.31324 * 30 9 7 32 32 H 0.97005 * 119.99803 * 359.97438 * 1 2 3 33 33 H 1.09009 * 110.01649 * 314.63529 * 10 9 7 34 34 H 1.09000 * 110.01732 * 75.97880 * 10 9 7 35 35 H 1.09007 * 110.79545 * 90.53090 * 11 10 9 36 36 H 1.09000 * 110.79785 * 214.00940 * 11 10 9 37 37 H 1.09009 * 108.44026 * 20.48377 * 14 12 11 38 38 H 1.08997 * 108.44554 * 137.79305 * 14 12 11 39 39 H 1.08008 * 125.11146 * 359.96364 * 19 18 16 40 40 H 1.07998 * 120.85036 * 0.02562 * 23 22 20 41 41 H 1.07996 * 120.17401 * 179.97438 * 24 23 22 42 42 H 1.07993 * 119.40264 * 180.02562 * 25 24 23 43 43 H 1.08998 * 109.87488 * 295.29180 * 28 15 14 44 44 H 1.09004 * 109.92765 * 174.28002 * 28 15 14 45 45 H 1.09004 * 109.38508 * 178.38177 * 29 28 15 46 46 H 1.08996 * 109.39019 * 58.70121 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4038 2.1006 1.3958 5 1 1.4979 2.6237 -0.7919 6 1 3.5916 1.4148 -0.6039 7 6 2.0102 -1.2022 -0.0005 8 1 3.0625 -1.2181 -0.2430 9 7 1.3606 -2.3679 0.3065 10 6 -0.0283 -2.4690 0.7730 11 6 -0.1979 -3.8897 1.3549 12 6 0.8367 -4.6994 0.5633 13 1 0.3549 -4.9500 -0.3817 14 6 1.2019 -6.0055 1.1870 15 7 2.4686 -6.0061 1.8981 16 6 2.6095 -6.7247 3.0296 17 8 3.6952 -6.7959 3.5737 18 6 1.4516 -7.4221 3.6060 19 6 0.3591 -7.8850 2.9317 20 7 -0.4987 -8.4727 3.7983 21 1 -1.3455 -8.8763 3.5517 22 6 0.0024 -8.4163 5.0814 23 6 -0.4683 -8.8607 6.3141 24 6 0.3107 -8.6331 7.4343 25 6 1.5247 -7.9774 7.3034 26 7 1.9534 -7.5644 6.1293 27 6 1.2450 -7.7633 5.0250 28 6 3.5908 -5.2149 1.3783 29 6 3.1001 -3.7751 1.2181 30 6 1.9462 -3.7242 0.2139 31 1 2.3084 -3.9101 -0.7970 32 1 -0.4850 0.8401 0.0004 33 1 -0.2175 -1.7240 1.5460 34 1 -0.7139 -2.3226 -0.0617 35 1 0.0338 -3.9019 2.4200 36 1 -1.2049 -4.2650 1.1725 37 1 0.4094 -6.2907 1.8791 38 1 1.2563 -6.7594 0.4017 39 1 0.2024 -7.7957 1.8668 40 1 -1.4170 -9.3708 6.3934 41 1 -0.0253 -8.9645 8.4056 42 1 2.1299 -7.8021 8.1805 43 1 3.9057 -5.6088 0.4119 44 1 4.4242 -5.2464 2.0802 45 1 3.9192 -3.1515 0.8597 46 1 2.7573 -3.4002 2.1824 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036869839.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:56 Heat of formation + Delta-G solvation = 87.470929 kcal Electronic energy + Delta-G solvation = -29916.904953 eV Core-core repulsion = 26001.504295 eV Total energy + Delta-G solvation = -3915.400658 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.99961 -39.99658 -38.20052 -37.93802 -35.21967 -33.16444 -32.66186 -32.05584 -30.41761 -29.84521 -29.33007 -28.10491 -25.38288 -24.20414 -23.87625 -23.16115 -22.51889 -21.77026 -20.33116 -19.56251 -18.66577 -17.78184 -17.19397 -16.74922 -16.62584 -16.16752 -15.60627 -15.50351 -14.92445 -14.79332 -14.72962 -14.47067 -13.86431 -13.56775 -13.36647 -13.10679 -13.02608 -12.83327 -12.77264 -12.51313 -12.38609 -12.23760 -11.68280 -11.52433 -11.36609 -10.91706 -10.77422 -10.68514 -10.49084 -10.14402 -10.05155 -9.89428 -9.71870 -9.58430 -9.51692 -9.34972 -8.73193 -8.57390 -8.40053 -8.25260 -6.81998 -5.73921 -3.03509 0.65459 1.10341 1.86221 2.58143 3.09212 3.40807 3.42095 3.48512 3.49176 3.84912 4.00715 4.35277 4.49120 4.52292 4.67612 4.73544 4.81098 4.93655 5.09018 5.18504 5.22572 5.27445 5.36280 5.39484 5.51650 5.62860 5.73549 5.79876 5.85117 5.93899 5.95296 5.98461 6.05164 6.10532 6.25539 6.35201 6.41986 6.53196 6.61195 6.66132 6.76697 6.93994 6.98715 7.13327 7.50764 7.59845 7.67047 7.80324 7.97450 8.25255 8.48942 9.21136 9.83162 10.48702 11.38763 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017176 B = 0.002904 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.761305 B = 9639.604405 C = 9767.211241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.007 4.007 3 Si 0.906 3.094 4 H -0.289 1.289 5 H -0.293 1.293 6 H -0.280 1.280 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.598 5.598 10 C 0.176 3.824 11 C -0.135 4.135 12 C -0.107 4.107 13 H 0.065 0.935 14 C 0.112 3.888 15 N -0.599 5.599 16 C 0.587 3.413 17 O -0.529 6.529 18 C -0.204 4.204 19 C 0.109 3.891 20 N -0.575 5.575 21 H 0.422 0.578 22 C 0.034 3.966 23 C -0.079 4.079 24 C -0.160 4.160 25 C 0.097 3.903 26 N -0.434 5.434 27 C 0.139 3.861 28 C 0.115 3.885 29 C -0.139 4.139 30 C 0.174 3.826 31 H 0.041 0.959 32 H 0.252 0.748 33 H 0.050 0.950 34 H 0.035 0.965 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.087 0.913 38 H 0.058 0.942 39 H 0.198 0.802 40 H 0.134 0.866 41 H 0.140 0.860 42 H 0.159 0.841 43 H 0.065 0.935 44 H 0.089 0.911 45 H 0.070 0.930 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.107 -21.457 8.221 23.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.204 4.204 3 Si 0.736 3.264 4 H -0.217 1.217 5 H -0.219 1.219 6 H -0.206 1.206 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.322 5.322 10 C 0.051 3.949 11 C -0.174 4.174 12 C -0.127 4.127 13 H 0.084 0.916 14 C -0.012 4.012 15 N -0.332 5.332 16 C 0.376 3.624 17 O -0.406 6.406 18 C -0.216 4.216 19 C -0.025 4.025 20 N -0.177 5.177 21 H 0.261 0.739 22 C -0.073 4.073 23 C -0.108 4.108 24 C -0.181 4.181 25 C -0.070 4.070 26 N -0.142 5.142 27 C 0.005 3.995 28 C -0.007 4.007 29 C -0.179 4.179 30 C 0.066 3.934 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.105 0.895 38 H 0.076 0.924 39 H 0.215 0.785 40 H 0.151 0.849 41 H 0.158 0.842 42 H 0.177 0.823 43 H 0.083 0.917 44 H 0.107 0.893 45 H 0.088 0.912 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.880 -20.844 8.289 22.765 hybrid contribution -1.053 0.418 -0.162 1.145 sum -4.933 -20.426 8.127 22.530 Atomic orbital electron populations 1.70011 1.04994 1.25118 1.56164 1.24750 0.95521 0.97736 1.02348 0.86191 0.78855 0.83779 0.77535 1.21666 1.21943 1.20566 1.18990 0.92684 0.83247 1.40548 0.90472 1.44711 1.10251 0.99871 1.77398 1.21078 0.86363 0.90325 0.97140 1.22647 0.96622 0.98890 0.99224 1.20718 0.98205 0.94107 0.99664 0.91623 1.21039 0.86381 0.97715 0.96055 1.47491 1.13103 1.47506 1.25075 1.17109 0.87151 0.78642 0.79526 1.90792 1.26792 1.62569 1.60455 1.19952 0.98070 1.12277 0.91299 1.22839 0.88822 0.94321 0.96477 1.41414 1.20559 1.50656 1.05071 0.73946 1.19106 0.96822 1.04752 0.86658 1.20496 1.00500 1.00551 0.89236 1.21890 0.96140 1.01302 0.98756 1.22757 0.94219 0.95176 0.94820 1.67114 1.33011 1.16627 0.97411 1.19450 0.90172 0.97791 0.92128 1.21658 0.88854 0.91342 0.98894 1.22393 0.99999 0.93831 1.01663 1.20418 0.91309 0.86018 0.95610 0.94116 0.93835 0.93153 0.94744 0.92550 0.92099 0.89540 0.92442 0.78509 0.84859 0.84213 0.82349 0.91716 0.89295 0.91183 0.91466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.73 10.71 55.49 0.59 -26.13 16 2 C -0.01 -0.19 5.36 -17.43 -0.09 -0.29 16 3 Si 0.91 22.18 29.58 -169.99 -5.03 17.15 16 4 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.23 -6.18 9.79 -15.06 -0.15 -6.33 16 8 H 0.08 2.05 7.82 -52.48 -0.41 1.64 16 9 N -0.60 -14.70 3.05 -163.99 -0.50 -15.20 16 10 C 0.18 4.14 5.36 -3.08 -0.02 4.12 16 11 C -0.14 -2.37 6.37 -25.77 -0.16 -2.54 16 12 C -0.11 -1.69 2.45 -92.87 -0.23 -1.92 16 13 H 0.07 0.97 8.05 -51.93 -0.42 0.55 16 14 C 0.11 1.39 4.59 -6.54 -0.03 1.36 16 15 N -0.60 -9.12 2.99 -178.09 -0.53 -9.65 16 16 C 0.59 9.98 7.63 -12.74 -0.10 9.89 16 17 O -0.53 -10.99 16.46 5.23 0.09 -10.90 16 18 C -0.20 -2.91 5.86 -103.28 -0.60 -3.52 16 19 C 0.11 1.01 9.51 -16.63 -0.16 0.85 16 20 N -0.57 -4.38 5.98 -10.46 -0.06 -4.44 16 21 H 0.42 1.50 8.96 -40.82 -0.37 1.13 16 22 C 0.03 0.37 7.27 -83.94 -0.61 -0.24 16 23 C -0.08 -0.65 10.19 -39.18 -0.40 -1.05 16 24 C -0.16 -1.32 10.09 -39.41 -0.40 -1.72 16 25 C 0.10 1.08 11.16 -17.50 -0.20 0.88 16 26 N -0.43 -6.81 10.41 -9.70 -0.10 -6.91 16 27 C 0.14 2.05 7.45 -82.91 -0.62 1.43 16 28 C 0.11 1.83 6.42 -3.89 -0.02 1.80 16 29 C -0.14 -2.58 5.18 -26.73 -0.14 -2.71 16 30 C 0.17 3.39 3.41 -67.69 -0.23 3.16 16 31 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.05 1.34 7.36 -51.92 -0.38 0.96 16 34 H 0.03 0.89 7.73 -51.93 -0.40 0.49 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.09 0.93 3.75 -51.92 -0.19 0.73 16 38 H 0.06 0.56 7.94 -51.93 -0.41 0.14 16 39 H 0.20 1.19 5.55 -52.48 -0.29 0.90 16 40 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 41 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.09 1.50 7.02 -51.93 -0.36 1.14 16 45 H 0.07 1.33 8.06 -51.93 -0.42 0.91 16 46 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 364.01 15.07 5.49 5.49 Total: -1.00 -37.16 364.01 -10.39 -47.55 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -6.18 Total: -0.12 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: -4.15 Total: 3.17 kcal Atomic # 7 Polarization: -61.73 SS G_CDS: -0.60 Total: -62.33 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.09 Total: -10.90 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.03 Total: 17.15 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -37.16 -10.39 -47.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036869839.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.023 kcal (2) G-P(sol) polarization free energy of solvation -37.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds