Wall clock time and date at job start Tue Mar 31 2020 23:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 119.99749 * 2 1 4 4 H 1.48498 * 109.47311 * 274.98310 * 3 2 1 5 5 H 1.48499 * 109.47473 * 34.98724 * 3 2 1 6 6 H 1.48505 * 109.46719 * 154.98645 * 3 2 1 7 7 C 1.38814 * 119.99863 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99699 * 187.88285 * 7 2 1 9 9 N 1.36930 * 120.00134 * 7.87390 * 7 2 1 10 10 C 1.48153 * 126.40833 * 356.13680 * 9 7 2 11 11 C 1.55294 * 107.04780 * 175.07188 * 10 9 7 12 12 C 1.53745 * 101.83914 * 337.51900 * 11 10 9 13 13 H 1.09001 * 111.31376 * 280.15284 * 12 11 10 14 14 C 1.52241 * 114.74369 * 152.75195 * 12 11 10 15 15 N 1.47710 * 106.36892 * 190.43242 * 14 12 11 16 16 C 1.34778 * 119.68002 * 232.03454 * 15 14 12 17 17 O 1.21665 * 120.00310 * 354.74012 * 16 15 14 18 18 C 1.46935 * 119.99972 * 174.74703 * 16 15 14 19 19 C 1.36480 * 126.72775 * 30.67485 * 18 16 15 20 20 N 1.35360 * 109.77117 * 179.87096 * 19 18 16 21 21 H 0.96999 * 124.82373 * 180.13986 * 20 19 18 22 22 C 1.37858 * 110.35205 * 0.41128 * 20 19 18 23 23 C 1.39227 * 133.47450 * 179.73273 * 22 20 19 24 24 C 1.38346 * 118.29515 * 180.02562 * 23 22 20 25 25 C 1.38593 * 119.64528 * 359.97438 * 24 23 22 26 26 N 1.31642 * 121.19252 * 0.02562 * 25 24 23 27 27 C 1.32693 * 121.42306 * 0.02562 * 26 25 24 28 28 C 1.46593 * 120.64121 * 52.05641 * 15 14 12 29 29 C 1.53962 * 110.57309 * 312.17847 * 28 15 14 30 30 C 1.45469 * 126.40198 * 175.81432 * 9 7 2 31 31 H 1.09001 * 109.26211 * 93.81431 * 30 9 7 32 32 H 0.96994 * 120.00119 * 359.97438 * 1 2 3 33 33 H 1.08999 * 109.91973 * 294.41969 * 10 9 7 34 34 H 1.09003 * 109.92094 * 55.71920 * 10 9 7 35 35 H 1.08997 * 110.95587 * 95.65715 * 11 10 9 36 36 H 1.09001 * 110.95312 * 219.38400 * 11 10 9 37 37 H 1.09005 * 110.06474 * 309.64262 * 14 12 11 38 38 H 1.08995 * 110.06702 * 71.21382 * 14 12 11 39 39 H 1.08001 * 125.10829 * 0.02562 * 19 18 16 40 40 H 1.07998 * 120.85449 * 0.04455 * 23 22 20 41 41 H 1.08000 * 120.17379 * 180.02562 * 24 23 22 42 42 H 1.07999 * 119.40806 * 179.97438 * 25 24 23 43 43 H 1.09010 * 109.25643 * 72.45521 * 28 15 14 44 44 H 1.08993 * 109.26129 * 191.92781 * 28 15 14 45 45 H 1.08997 * 109.88335 * 170.51319 * 29 28 15 46 46 H 1.09000 * 109.87823 * 291.52009 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3923 2.1073 -1.3947 5 1 1.5042 2.6200 0.8028 6 1 3.5964 1.4120 0.5920 7 6 2.0102 -1.2022 -0.0005 8 1 3.0826 -1.2066 0.1277 9 7 1.3353 -2.3824 -0.1635 10 6 -0.1331 -2.5481 -0.2698 11 6 -0.4014 -4.0481 -0.5696 12 6 0.9405 -4.4941 -1.1729 13 1 1.0208 -4.2020 -2.2200 14 6 1.2637 -5.9701 -0.9867 15 7 2.6728 -6.1424 -1.3949 16 6 2.9954 -7.0923 -2.2950 17 8 2.1452 -7.8650 -2.6953 18 6 4.3741 -7.1947 -2.7928 19 6 5.5133 -6.8753 -2.1124 20 7 6.5935 -7.1040 -2.8954 21 1 7.5136 -6.9531 -2.6278 22 6 6.2000 -7.5762 -4.1294 23 6 6.8932 -7.9536 -5.2763 24 6 6.1654 -8.3927 -6.3678 25 6 4.7825 -8.4458 -6.2932 26 7 4.1443 -8.0848 -5.1998 27 6 4.7974 -7.6558 -4.1274 28 6 3.7238 -5.2907 -0.8301 29 6 3.3060 -3.8097 -0.8819 30 6 1.9264 -3.7072 -0.2712 31 1 1.9532 -4.1702 0.7152 32 1 -0.4850 0.8400 0.0004 33 1 -0.6077 -2.2667 0.6702 34 1 -0.5186 -1.9323 -1.0824 35 1 -0.6180 -4.5962 0.3473 36 1 -1.2105 -4.1627 -1.2910 37 1 1.1403 -6.2508 0.0594 38 1 0.6146 -6.5776 -1.6172 39 1 5.5478 -6.4993 -1.1006 40 1 7.9715 -7.9051 -5.3129 41 1 6.6722 -8.6933 -7.2729 42 1 4.2181 -8.7889 -7.1477 43 1 3.9011 -5.5781 0.2064 44 1 4.6416 -5.4250 -1.4023 45 1 4.0122 -3.2053 -0.3127 46 1 3.2766 -3.4689 -1.9168 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036869840.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:00 Heat of formation + Delta-G solvation = 90.968929 kcal Electronic energy + Delta-G solvation = -29659.414846 eV Core-core repulsion = 25744.165872 eV Total energy + Delta-G solvation = -3915.248974 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.02592 -39.95303 -38.25382 -37.88180 -35.29126 -33.18141 -32.63191 -31.53104 -30.70188 -30.08584 -29.22402 -27.88641 -25.17215 -24.15739 -24.01423 -22.93443 -22.23273 -21.86203 -20.11158 -19.66420 -19.10321 -18.00506 -17.26372 -16.82620 -16.38562 -15.98940 -15.63374 -15.32376 -14.94852 -14.94068 -14.67106 -14.31672 -13.90770 -13.67168 -13.47185 -13.14330 -12.98987 -12.86824 -12.78216 -12.58649 -12.40320 -12.21760 -11.62092 -11.39593 -11.32184 -10.85170 -10.75212 -10.70235 -10.49755 -10.13300 -10.05554 -9.86025 -9.70104 -9.63114 -9.44902 -9.37589 -8.75367 -8.58848 -8.46416 -8.29349 -6.82803 -5.72966 -3.03901 0.62336 1.07659 1.83892 2.55251 3.03482 3.36218 3.38953 3.43466 3.46225 3.80959 3.97436 4.32678 4.47314 4.49466 4.64843 4.70795 4.90150 4.97950 5.04250 5.19082 5.23475 5.26732 5.37728 5.41695 5.54935 5.59492 5.65894 5.82267 5.84316 5.91337 5.95386 6.07668 6.09508 6.20649 6.22313 6.28436 6.40866 6.57607 6.58413 6.66790 6.68354 6.89169 6.93746 7.10657 7.55809 7.61945 7.65126 7.81661 7.94091 8.24665 8.45981 9.19214 9.83363 10.52526 11.40334 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015698 B = 0.002913 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.238390 B = 9611.248103 C =10461.955030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.007 4.007 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.226 4.226 8 H 0.078 0.922 9 N -0.595 5.595 10 C 0.177 3.823 11 C -0.136 4.136 12 C -0.123 4.123 13 H 0.079 0.921 14 C 0.130 3.870 15 N -0.605 5.605 16 C 0.586 3.414 17 O -0.530 6.530 18 C -0.204 4.204 19 C 0.107 3.893 20 N -0.575 5.575 21 H 0.423 0.577 22 C 0.035 3.965 23 C -0.079 4.079 24 C -0.160 4.160 25 C 0.097 3.903 26 N -0.435 5.435 27 C 0.138 3.862 28 C 0.088 3.912 29 C -0.130 4.130 30 C 0.169 3.831 31 H 0.018 0.982 32 H 0.252 0.748 33 H 0.039 0.961 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.201 0.799 40 H 0.134 0.866 41 H 0.140 0.860 42 H 0.160 0.840 43 H 0.067 0.933 44 H 0.092 0.908 45 H 0.075 0.925 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.675 -16.515 -6.567 23.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.354 4.354 8 H 0.096 0.904 9 N -0.319 5.319 10 C 0.052 3.948 11 C -0.174 4.174 12 C -0.144 4.144 13 H 0.097 0.903 14 C 0.009 3.991 15 N -0.338 5.338 16 C 0.374 3.626 17 O -0.407 6.407 18 C -0.215 4.215 19 C -0.026 4.026 20 N -0.177 5.177 21 H 0.261 0.739 22 C -0.073 4.073 23 C -0.108 4.108 24 C -0.181 4.181 25 C -0.070 4.070 26 N -0.142 5.142 27 C 0.004 3.996 28 C -0.035 4.035 29 C -0.169 4.169 30 C 0.060 3.940 31 H 0.035 0.965 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.217 0.783 40 H 0.151 0.849 41 H 0.158 0.842 42 H 0.177 0.823 43 H 0.085 0.915 44 H 0.109 0.891 45 H 0.093 0.907 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 14.325 -16.678 -6.607 22.957 hybrid contribution 1.921 1.258 0.105 2.299 sum 16.246 -15.420 -6.502 23.324 Atomic orbital electron populations 1.69958 1.04920 1.25042 1.56613 1.24803 0.95633 0.97590 1.02319 0.86180 0.78679 0.83933 0.77468 1.21709 1.21820 1.20703 1.18973 0.91155 0.82579 1.42729 0.90415 1.44199 1.01872 1.00681 1.85162 1.21525 0.84012 0.88835 1.00381 1.22709 0.95561 0.99736 0.99443 1.22576 0.97674 0.93564 1.00578 0.90257 1.21594 0.80558 0.96907 1.00077 1.48111 1.08770 1.34056 1.42845 1.17173 0.86421 0.80646 0.78366 1.90793 1.50070 1.41774 1.58085 1.19973 0.93344 1.14090 0.94111 1.22783 0.84946 0.97426 0.97441 1.41421 1.09148 1.56181 1.10979 0.73928 1.19103 0.95500 1.04342 0.88379 1.20503 0.99913 0.99837 0.90528 1.21894 0.95547 1.01795 0.98832 1.22757 0.91700 0.97055 0.95443 1.67110 1.40227 1.08414 0.98491 1.19450 0.87827 0.99442 0.92910 1.22444 0.91018 0.91637 0.98430 1.21841 0.99294 0.93409 1.02342 1.20484 0.91088 0.87731 0.94666 0.96493 0.93752 0.94277 0.92944 0.92286 0.92027 0.91369 0.89172 0.78297 0.84851 0.84195 0.82325 0.91496 0.89067 0.90655 0.91412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.84 10.49 55.49 0.58 -26.26 16 2 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 3 Si 0.91 21.79 29.56 -169.99 -5.02 16.76 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.23 -6.09 9.85 -15.06 -0.15 -6.24 16 8 H 0.08 2.00 7.28 -52.49 -0.38 1.61 16 9 N -0.59 -14.75 3.35 -163.45 -0.55 -15.30 16 10 C 0.18 4.27 5.46 -1.92 -0.01 4.26 16 11 C -0.14 -2.56 6.54 -25.13 -0.16 -2.73 16 12 C -0.12 -2.26 2.85 -89.53 -0.26 -2.52 16 13 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 14 C 0.13 2.09 5.94 -3.77 -0.02 2.07 16 15 N -0.60 -9.18 3.00 -173.94 -0.52 -9.70 16 16 C 0.59 9.81 7.61 -12.74 -0.10 9.72 16 17 O -0.53 -10.86 16.46 5.22 0.09 -10.77 16 18 C -0.20 -2.85 5.83 -103.28 -0.60 -3.45 16 19 C 0.11 0.97 9.50 -16.63 -0.16 0.81 16 20 N -0.58 -4.26 5.98 -10.46 -0.06 -4.32 16 21 H 0.42 1.42 8.96 -40.82 -0.37 1.06 16 22 C 0.03 0.36 7.27 -83.94 -0.61 -0.25 16 23 C -0.08 -0.64 10.19 -39.17 -0.40 -1.04 16 24 C -0.16 -1.28 10.09 -39.41 -0.40 -1.68 16 25 C 0.10 1.05 11.16 -17.50 -0.20 0.85 16 26 N -0.44 -6.67 10.41 -9.70 -0.10 -6.77 16 27 C 0.14 2.00 7.47 -82.92 -0.62 1.38 16 28 C 0.09 1.10 5.25 -3.49 -0.02 1.08 16 29 C -0.13 -2.13 5.50 -27.12 -0.15 -2.28 16 30 C 0.17 3.33 2.55 -68.29 -0.17 3.16 16 31 H 0.02 0.35 7.89 -51.93 -0.41 -0.06 16 32 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.04 1.03 7.79 -51.93 -0.40 0.63 16 34 H 0.05 1.41 7.23 -51.93 -0.38 1.04 16 35 H 0.06 1.02 8.11 -51.93 -0.42 0.60 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 38 H 0.09 1.52 7.03 -51.93 -0.37 1.15 16 39 H 0.20 1.14 5.81 -52.49 -0.31 0.84 16 40 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 41 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 42 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 43 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 44 H 0.09 0.91 3.40 -51.93 -0.18 0.74 16 45 H 0.07 1.21 7.64 -51.93 -0.40 0.82 16 46 H 0.07 1.22 8.13 -51.93 -0.42 0.80 16 LS Contribution 363.37 15.07 5.48 5.48 Total: -1.00 -37.07 363.37 -10.35 -47.42 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -6.12 Total: 0.62 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -4.12 Total: 2.86 kcal Atomic # 7 Polarization: -61.70 SS G_CDS: -0.65 Total: -62.35 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.09 Total: -10.77 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -37.07 -10.35 -47.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036869840.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.387 kcal (2) G-P(sol) polarization free energy of solvation -37.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds