Wall clock time and date at job start Tue Mar 31 2020 23:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86808 * 119.99904 * 2 1 4 4 H 1.48490 * 109.47206 * 269.99946 * 3 2 1 5 5 H 1.48501 * 109.47119 * 30.00619 * 3 2 1 6 6 H 1.48499 * 109.46798 * 149.99887 * 3 2 1 7 7 C 1.38812 * 120.00408 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00338 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99883 * 359.97438 * 7 2 1 10 10 C 1.47662 * 126.19738 * 359.97438 * 9 7 2 11 11 C 1.54643 * 106.94026 * 178.34053 * 10 9 7 12 12 C 1.56264 * 102.20405 * 335.91987 * 11 10 9 13 13 H 1.09006 * 112.61208 * 158.91186 * 12 11 10 14 14 C 1.51867 * 106.82106 * 282.54443 * 12 11 10 15 15 N 1.43523 * 116.04351 * 130.06429 * 14 12 11 16 16 C 1.34776 * 115.76722 * 180.56826 * 15 14 12 17 17 O 1.21667 * 119.99720 * 4.86124 * 16 15 14 18 18 C 1.46932 * 120.00359 * 184.86061 * 16 15 14 19 19 C 1.36470 * 126.72622 * 310.94776 * 18 16 15 20 20 N 1.35361 * 109.77478 * 179.97438 * 19 18 16 21 21 H 0.97007 * 124.82645 * 179.97438 * 20 19 18 22 22 C 1.37865 * 110.35110 * 0.02562 * 20 19 18 23 23 C 1.39218 * 133.47938 * 180.02562 * 22 20 19 24 24 C 1.38338 * 118.30220 * 179.97438 * 23 22 20 25 25 C 1.38602 * 119.64088 * 0.02562 * 24 23 22 26 26 N 1.31634 * 121.19271 * 359.97421 * 25 24 23 27 27 C 1.32688 * 121.42354 * 0.04340 * 26 25 24 28 28 C 1.44227 * 128.47571 * 0.86032 * 15 14 12 29 29 C 1.51805 * 112.77820 * 5.69097 * 28 15 14 30 30 C 1.46655 * 126.20118 * 179.97438 * 9 7 2 31 31 H 1.08999 * 108.98231 * 90.77341 * 30 9 7 32 32 H 0.97001 * 119.99910 * 359.97438 * 1 2 3 33 33 H 1.09006 * 109.96840 * 58.96730 * 10 9 7 34 34 H 1.08999 * 109.99545 * 297.73681 * 10 9 7 35 35 H 1.08998 * 110.85866 * 217.73968 * 11 10 9 36 36 H 1.09001 * 110.85602 * 94.09543 * 11 10 9 37 37 H 1.09004 * 108.16760 * 8.36382 * 14 12 11 38 38 H 1.09000 * 108.16991 * 251.77393 * 14 12 11 39 39 H 1.07995 * 125.11319 * 0.23048 * 19 18 16 40 40 H 1.08003 * 120.85399 * 359.97438 * 23 22 20 41 41 H 1.08003 * 120.18416 * 179.97438 * 24 23 22 42 42 H 1.07992 * 119.40710 * 180.02562 * 25 24 23 43 43 H 1.08996 * 108.83061 * 126.75262 * 28 15 14 44 44 H 1.08999 * 108.82767 * 245.07021 * 28 15 14 45 45 H 1.08999 * 109.09415 * 203.86971 * 29 28 15 46 46 H 1.09010 * 108.72012 * 85.13523 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7002 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1423 -2.5476 0.0005 11 6 -0.4306 -4.0663 -0.0428 12 6 0.8754 -4.6321 -0.6879 13 1 1.0233 -5.6909 -0.4749 14 6 0.7861 -4.3531 -2.1780 15 7 1.9330 -3.7269 -2.7717 16 6 1.8431 -3.4710 -4.0918 17 8 0.8025 -3.6875 -4.6840 18 6 3.0016 -2.9305 -4.8161 19 6 3.7722 -1.8670 -4.4452 20 7 4.7477 -1.6664 -5.3620 21 1 5.4182 -0.9671 -5.3136 22 6 4.6521 -2.5966 -6.3751 23 6 5.3883 -2.8308 -7.5332 24 6 5.0083 -3.8797 -8.3512 25 6 3.9179 -4.6609 -8.0021 26 7 3.2337 -4.4242 -6.9028 27 6 3.5586 -3.4300 -6.0863 28 6 3.1714 -3.3409 -2.1413 29 6 3.2584 -3.7883 -0.6933 30 6 1.9175 -3.7299 -0.0016 31 1 2.0487 -4.0604 1.0288 32 1 -0.4850 0.8401 0.0004 33 1 -0.5701 -2.0623 -0.8768 34 1 -0.5636 -2.1143 0.9076 35 1 -1.2967 -4.2792 -0.6693 36 1 -0.5704 -4.4635 0.9626 37 1 -0.0789 -3.7132 -2.3527 38 1 0.6116 -5.2988 -2.6911 39 1 3.6283 -1.2769 -3.5523 40 1 6.2346 -2.2095 -7.7867 41 1 5.5577 -4.0884 -9.2573 42 1 3.6248 -5.4790 -8.6432 43 1 4.0006 -3.7777 -2.6979 44 1 3.2604 -2.2551 -2.1763 45 1 3.9598 -3.1444 -0.1627 46 1 3.6276 -4.8136 -0.6656 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036869841.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:03 Heat of formation + Delta-G solvation = 82.016155 kcal Electronic energy + Delta-G solvation = -30682.820840 eV Core-core repulsion = 26767.183645 eV Total energy + Delta-G solvation = -3915.637195 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.77423 -40.01934 -38.11365 -37.71860 -34.89578 -33.09547 -32.70223 -31.79084 -30.40940 -29.79228 -29.14411 -27.60387 -25.23132 -24.17277 -23.84520 -22.79747 -22.48339 -21.99943 -20.04457 -19.16351 -18.29210 -17.67262 -16.97552 -16.54767 -16.29340 -16.10461 -15.64760 -15.39071 -14.97083 -14.74812 -14.57173 -14.09212 -13.84332 -13.65958 -13.32992 -13.17414 -12.92535 -12.72050 -12.62559 -12.46748 -12.04815 -12.03195 -11.47359 -11.38865 -11.19568 -10.94840 -10.76441 -10.71597 -10.35464 -10.19378 -9.89824 -9.79233 -9.66583 -9.64004 -9.48267 -9.20120 -8.63041 -8.56827 -8.14911 -7.85897 -6.82907 -5.72917 -3.05172 0.84392 1.25090 2.17581 2.80254 3.31095 3.32811 3.36407 3.41269 3.65618 3.94581 4.20758 4.43656 4.53723 4.74026 4.83263 4.92625 5.12472 5.20292 5.25534 5.34429 5.38978 5.41370 5.50801 5.55337 5.59351 5.70597 5.76980 5.90649 5.97396 6.04648 6.14817 6.20220 6.27568 6.32700 6.36546 6.40500 6.48865 6.55940 6.71799 6.77595 6.78521 6.93627 7.18333 7.35612 7.52970 7.65068 7.82299 7.91765 8.07871 8.23299 8.78756 9.17966 9.80838 10.50632 11.39354 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012878 B = 0.004194 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.810605 B = 6674.208715 C = 7976.481435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.006 4.006 3 Si 0.903 3.097 4 H -0.291 1.291 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.223 4.223 8 H 0.077 0.923 9 N -0.591 5.591 10 C 0.177 3.823 11 C -0.143 4.143 12 C -0.113 4.113 13 H 0.081 0.919 14 C 0.147 3.853 15 N -0.573 5.573 16 C 0.580 3.420 17 O -0.534 6.534 18 C -0.202 4.202 19 C 0.120 3.880 20 N -0.576 5.576 21 H 0.422 0.578 22 C 0.035 3.965 23 C -0.079 4.079 24 C -0.163 4.163 25 C 0.093 3.907 26 N -0.441 5.441 27 C 0.136 3.864 28 C 0.129 3.871 29 C -0.124 4.124 30 C 0.171 3.829 31 H 0.024 0.976 32 H 0.252 0.748 33 H 0.047 0.953 34 H 0.041 0.959 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.047 0.953 39 H 0.196 0.804 40 H 0.132 0.868 41 H 0.138 0.862 42 H 0.157 0.843 43 H 0.052 0.948 44 H 0.068 0.932 45 H 0.075 0.925 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.485 -7.027 -10.254 17.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.202 4.202 3 Si 0.734 3.266 4 H -0.219 1.219 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.351 4.351 8 H 0.094 0.906 9 N -0.317 5.317 10 C 0.053 3.947 11 C -0.181 4.181 12 C -0.133 4.133 13 H 0.099 0.901 14 C 0.024 3.976 15 N -0.303 5.303 16 C 0.367 3.633 17 O -0.411 6.411 18 C -0.213 4.213 19 C -0.013 4.013 20 N -0.178 5.178 21 H 0.260 0.740 22 C -0.073 4.073 23 C -0.108 4.108 24 C -0.184 4.184 25 C -0.073 4.073 26 N -0.148 5.148 27 C 0.002 3.998 28 C 0.006 3.994 29 C -0.163 4.163 30 C 0.063 3.937 31 H 0.042 0.958 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.066 0.934 39 H 0.212 0.788 40 H 0.150 0.850 41 H 0.156 0.844 42 H 0.175 0.825 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.094 0.906 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.195 -7.329 -10.180 16.813 hybrid contribution 1.538 1.966 -0.120 2.499 sum 12.733 -5.363 -10.300 17.233 Atomic orbital electron populations 1.69942 1.04813 1.24901 1.56599 1.24757 0.95572 0.97338 1.02568 0.86270 0.78690 0.84281 0.77406 1.21856 1.21712 1.20780 1.18883 0.90139 0.82210 1.43879 0.90553 1.44343 1.01469 0.99150 1.86696 1.21298 0.84242 0.88292 1.00891 1.23328 0.95791 0.99717 0.99302 1.22452 0.98445 0.98599 0.93772 0.90078 1.20262 0.87788 0.96621 0.92901 1.46114 1.16277 1.59961 1.07993 1.17217 0.86336 0.78118 0.81660 1.90762 1.29709 1.52619 1.68023 1.19900 1.01970 1.02240 0.97196 1.22573 0.87392 0.97297 0.94038 1.41401 1.28428 1.28632 1.19322 0.74005 1.19079 1.00446 0.94623 0.93136 1.20474 0.99514 0.98840 0.91966 1.21833 0.99383 0.96470 1.00756 1.22676 0.92147 0.99020 0.93454 1.67060 1.28222 1.16455 1.03079 1.19483 0.93167 0.92857 0.94335 1.20784 0.84645 1.00069 0.93924 1.21238 0.99738 1.00581 0.94749 1.20204 0.90614 0.87410 0.95464 0.95822 0.93780 0.93447 0.94071 0.91882 0.92317 0.91395 0.93444 0.78775 0.84998 0.84395 0.82539 0.92932 0.91441 0.90631 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.08 10.41 55.49 0.58 -25.50 16 2 C -0.01 -0.15 5.49 -17.43 -0.10 -0.24 16 3 Si 0.90 20.78 29.55 -169.99 -5.02 15.76 16 4 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.22 -5.60 8.86 -15.06 -0.13 -5.73 16 8 H 0.08 1.80 6.89 -52.49 -0.36 1.44 16 9 N -0.59 -13.82 3.05 -164.17 -0.50 -14.32 16 10 C 0.18 4.19 4.82 -2.54 -0.01 4.18 16 11 C -0.14 -2.65 6.14 -24.12 -0.15 -2.80 16 12 C -0.11 -1.98 3.80 -88.93 -0.34 -2.31 16 13 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 14 C 0.15 2.82 4.62 -6.19 -0.03 2.79 16 15 N -0.57 -10.89 3.19 -180.66 -0.58 -11.46 16 16 C 0.58 11.88 7.41 -12.74 -0.09 11.78 16 17 O -0.53 -12.84 16.69 5.22 0.09 -12.76 16 18 C -0.20 -3.50 5.06 -103.28 -0.52 -4.02 16 19 C 0.12 1.62 9.98 -16.63 -0.17 1.46 16 20 N -0.58 -6.12 5.98 -10.46 -0.06 -6.18 16 21 H 0.42 2.82 8.96 -40.82 -0.37 2.45 16 22 C 0.04 0.45 7.27 -83.94 -0.61 -0.16 16 23 C -0.08 -0.77 10.19 -39.18 -0.40 -1.17 16 24 C -0.16 -1.52 10.09 -39.41 -0.40 -1.92 16 25 C 0.09 1.12 11.16 -17.50 -0.20 0.92 16 26 N -0.44 -7.35 10.41 -9.70 -0.10 -7.45 16 27 C 0.14 2.24 7.51 -82.91 -0.62 1.62 16 28 C 0.13 2.13 4.37 -5.86 -0.03 2.10 16 29 C -0.12 -2.03 5.08 -28.35 -0.14 -2.17 16 30 C 0.17 3.27 2.93 -68.34 -0.20 3.07 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.05 1.28 7.13 -51.93 -0.37 0.91 16 34 H 0.04 1.08 7.58 -51.93 -0.39 0.69 16 35 H 0.06 1.10 7.81 -51.93 -0.41 0.69 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.07 1.49 6.50 -51.93 -0.34 1.15 16 38 H 0.05 0.88 8.10 -51.93 -0.42 0.46 16 39 H 0.20 2.45 6.26 -52.49 -0.33 2.12 16 40 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 41 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 42 H 0.16 1.39 8.06 -52.49 -0.42 0.96 16 43 H 0.05 0.77 7.18 -51.93 -0.37 0.40 16 44 H 0.07 1.16 5.15 -51.93 -0.27 0.89 16 45 H 0.08 1.21 7.36 -51.93 -0.38 0.83 16 46 H 0.06 0.81 8.14 -51.92 -0.42 0.38 16 LS Contribution 359.39 15.07 5.42 5.42 Total: -1.00 -34.99 359.39 -10.42 -45.41 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -6.10 Total: 3.70 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: -4.13 Total: 7.39 kcal Atomic # 7 Polarization: -64.26 SS G_CDS: -0.66 Total: -64.92 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: 0.09 Total: -12.76 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.99 -10.42 -45.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036869841.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.422 kcal (2) G-P(sol) polarization free energy of solvation -34.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds