Wall clock time and date at job start Tue Mar 31 2020 23:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 120.00066 * 2 1 4 4 H 1.48497 * 109.47191 * 270.00278 * 3 2 1 5 5 H 1.48497 * 109.47078 * 29.99987 * 3 2 1 6 6 H 1.48494 * 109.46739 * 150.00285 * 3 2 1 7 7 C 1.38815 * 119.99830 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99604 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00080 * 0.02562 * 7 2 1 10 10 C 1.48260 * 126.39481 * 359.96645 * 9 7 2 11 11 C 1.55286 * 106.99346 * 184.94160 * 10 9 7 12 12 C 1.53741 * 101.87640 * 22.49541 * 11 10 9 13 13 H 1.09001 * 111.30859 * 78.93295 * 12 11 10 14 14 C 1.52239 * 114.74578 * 207.22044 * 12 11 10 15 15 N 1.48923 * 105.76458 * 170.10886 * 14 12 11 16 16 C 1.34776 * 119.82305 * 127.70864 * 15 14 12 17 17 O 1.21663 * 119.99611 * 175.46405 * 16 15 14 18 18 C 1.46929 * 120.00094 * 355.46490 * 16 15 14 19 19 C 1.36487 * 126.72407 * 49.93937 * 18 16 15 20 20 N 1.35364 * 109.76980 * 179.86090 * 19 18 16 21 21 H 0.96998 * 124.81872 * 180.12795 * 20 19 18 22 22 C 1.37862 * 110.35064 * 0.41697 * 20 19 18 23 23 C 1.39225 * 133.47558 * 179.72860 * 22 20 19 24 24 C 1.38330 * 118.30141 * 180.02562 * 23 22 20 25 25 C 1.38600 * 119.63922 * 359.97438 * 24 23 22 26 26 N 1.31625 * 121.19671 * 359.97438 * 25 24 23 27 27 C 1.32693 * 121.42268 * 0.02562 * 26 25 24 28 28 C 1.46591 * 120.49023 * 307.41433 * 15 14 12 29 29 C 1.53956 * 110.57915 * 48.14354 * 28 15 14 30 30 C 1.45466 * 126.40500 * 180.02562 * 9 7 2 31 31 H 1.09005 * 109.26615 * 266.17948 * 30 9 7 32 32 H 0.97000 * 120.00226 * 359.97438 * 1 2 3 33 33 H 1.09004 * 109.94571 * 65.60665 * 10 9 7 34 34 H 1.08996 * 109.93866 * 304.27771 * 10 9 7 35 35 H 1.08993 * 110.95817 * 264.33577 * 11 10 9 36 36 H 1.09000 * 110.95477 * 140.64507 * 11 10 9 37 37 H 1.09007 * 110.07051 * 288.78889 * 14 12 11 38 38 H 1.08999 * 110.07563 * 50.36525 * 14 12 11 39 39 H 1.07995 * 125.11147 * 0.02562 * 19 18 16 40 40 H 1.08006 * 120.84884 * 0.04679 * 23 22 20 41 41 H 1.08002 * 120.18320 * 180.02562 * 24 23 22 42 42 H 1.08000 * 119.40212 * 179.97438 * 25 24 23 43 43 H 1.09005 * 109.25834 * 287.86312 * 28 15 14 44 44 H 1.08999 * 109.25524 * 168.42452 * 28 15 14 45 45 H 1.08997 * 109.88247 * 189.48775 * 29 28 15 46 46 H 1.08998 * 109.94503 * 68.43829 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 -0.1479 -2.5531 -0.0016 11 6 -0.4341 -4.0741 0.1249 12 6 0.8683 -4.5895 0.7588 13 1 0.8918 -4.3933 1.8308 14 6 1.2008 -6.0408 0.4411 15 7 2.5896 -6.2550 0.9345 16 6 2.8563 -7.2874 1.7588 17 8 4.0024 -7.5147 2.0978 18 6 1.7629 -8.1382 2.2481 19 6 0.7881 -8.7273 1.4961 20 7 -0.0410 -9.4376 2.2963 21 1 -0.8083 -9.9447 1.9881 22 6 0.3564 -9.3326 3.6123 23 6 -0.1383 -9.8498 4.8065 24 6 0.5225 -9.5362 5.9806 25 6 1.6462 -8.7259 5.9393 26 7 2.0998 -8.2469 4.8003 27 6 1.5011 -8.5191 3.6479 28 6 3.6715 -5.3546 0.5251 29 6 3.2447 -3.8848 0.6918 30 6 1.9078 -3.7211 -0.0017 31 1 1.9897 -4.0777 -1.0286 32 1 -0.4850 0.8400 0.0004 33 1 -0.5646 -2.1731 -0.9343 34 1 -0.5814 -2.0219 0.8457 35 1 -0.5951 -4.5233 -0.8550 36 1 -1.2856 -4.2574 0.7802 37 1 0.5140 -6.7054 0.9654 38 1 1.1411 -6.2117 -0.6337 39 1 0.6941 -8.6419 0.4237 40 1 -1.0154 -10.4801 4.8159 41 1 0.1652 -9.9213 6.9243 42 1 2.1589 -8.4831 6.8583 43 1 3.9180 -5.5409 -0.5203 44 1 4.5505 -5.5457 1.1407 45 1 3.9840 -3.2296 0.2314 46 1 3.1446 -3.6445 1.7503 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036869842.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:06 Heat of formation + Delta-G solvation = 51.825489 kcal Electronic energy + Delta-G solvation = -29793.423989 eV Core-core repulsion = 25876.477628 eV Total energy + Delta-G solvation = -3916.946361 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.71921 -41.17645 -39.54565 -38.82998 -36.61047 -34.39215 -34.00575 -33.22235 -31.52765 -30.97287 -30.42062 -29.44946 -26.78465 -25.40632 -24.84699 -24.15176 -23.42369 -22.72095 -21.80073 -21.08108 -20.00798 -18.97285 -18.55462 -17.93529 -17.55508 -17.11497 -16.88088 -16.55018 -16.29991 -16.06540 -15.73157 -15.59598 -15.55513 -14.87810 -14.64871 -14.33899 -14.08823 -14.06363 -13.82885 -13.62742 -13.59423 -13.28220 -13.20145 -13.08790 -13.03705 -12.69317 -12.44861 -12.10688 -12.01169 -11.74894 -11.59875 -11.44574 -11.28527 -11.15944 -10.82211 -10.69898 -10.23228 -9.69472 -9.47048 -9.09624 -8.84820 -7.83568 -5.16687 -0.02590 0.34565 1.11472 1.44535 1.45784 1.54129 1.76216 1.96169 2.24720 2.50343 2.97565 3.30703 3.34942 3.47164 3.53519 3.77056 3.83642 3.99376 4.03541 4.06767 4.15698 4.20432 4.27556 4.35227 4.39910 4.48843 4.52060 4.64299 4.66887 4.71087 4.73922 4.81591 4.88480 4.95271 5.08206 5.14770 5.16453 5.20020 5.25649 5.37574 5.48715 5.58098 5.60577 5.70673 5.80668 5.89658 6.22732 6.41204 6.50412 7.11606 7.17493 7.23520 7.81513 8.48797 9.27883 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017024 B = 0.002872 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.385877 B = 9746.647863 C = 9910.924332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.068 4.068 3 Si 0.971 3.029 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.273 1.273 7 C -0.230 4.230 8 H 0.080 0.920 9 N -0.618 5.618 10 C 0.179 3.821 11 C -0.115 4.115 12 C -0.111 4.111 13 H 0.050 0.950 14 C 0.125 3.875 15 N -0.605 5.605 16 C 0.590 3.410 17 O -0.588 6.588 18 C -0.262 4.262 19 C 0.155 3.845 20 N -0.549 5.549 21 H 0.446 0.554 22 C 0.030 3.970 23 C -0.067 4.067 24 C -0.156 4.156 25 C 0.082 3.918 26 N -0.507 5.507 27 C 0.091 3.909 28 C 0.129 3.871 29 C -0.121 4.121 30 C 0.157 3.843 31 H 0.034 0.966 32 H 0.245 0.755 33 H 0.007 0.993 34 H 0.012 0.988 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.234 0.766 40 H 0.177 0.823 41 H 0.179 0.821 42 H 0.171 0.829 43 H 0.086 0.914 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.728 -26.279 4.238 27.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.261 4.261 3 Si 0.800 3.200 4 H -0.212 1.212 5 H -0.223 1.223 6 H -0.198 1.198 7 C -0.360 4.360 8 H 0.098 0.902 9 N -0.343 5.343 10 C 0.054 3.946 11 C -0.153 4.153 12 C -0.131 4.131 13 H 0.068 0.932 14 C 0.004 3.996 15 N -0.337 5.337 16 C 0.380 3.620 17 O -0.469 6.469 18 C -0.273 4.273 19 C 0.019 3.981 20 N -0.152 5.152 21 H 0.290 0.710 22 C -0.078 4.078 23 C -0.096 4.096 24 C -0.177 4.177 25 C -0.084 4.084 26 N -0.216 5.216 27 C -0.042 4.042 28 C 0.005 3.995 29 C -0.160 4.160 30 C 0.050 3.950 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.025 0.975 34 H 0.030 0.970 35 H 0.110 0.890 36 H 0.099 0.901 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.250 0.750 40 H 0.195 0.805 41 H 0.196 0.804 42 H 0.188 0.812 43 H 0.104 0.896 44 H 0.091 0.909 45 H 0.087 0.913 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.512 -25.685 4.289 26.618 hybrid contribution -0.195 1.281 0.210 1.312 sum -5.708 -24.405 4.499 25.464 Atomic orbital electron populations 1.70147 1.06098 1.25007 1.58806 1.25558 0.96568 1.00713 1.03221 0.85180 0.77617 0.79731 0.77480 1.21164 1.22260 1.19827 1.19358 0.90845 0.83747 1.42001 0.90237 1.44546 1.02555 1.00736 1.86423 1.21365 0.83280 0.92412 0.97527 1.22570 0.96390 0.94860 1.01495 1.22474 0.96481 0.95570 0.98598 0.93157 1.22315 0.80833 0.95001 1.01435 1.48514 1.10514 1.27188 1.47462 1.17663 0.87472 0.80111 0.76768 1.90732 1.23971 1.72603 1.59598 1.19792 1.02869 1.12558 0.92104 1.22696 0.86950 0.90206 0.98273 1.41299 1.27272 1.43258 1.03388 0.71044 1.19183 0.97984 1.02954 0.87688 1.21039 1.00996 0.99321 0.88217 1.22277 0.96029 0.99218 1.00156 1.23171 0.95350 0.94769 0.95064 1.66969 1.32479 1.23376 0.98790 1.19843 0.94148 0.98440 0.91768 1.21432 0.89613 0.87444 1.00979 1.21781 0.98572 0.95823 0.99821 1.20901 0.92580 0.85387 0.96088 0.94839 0.94586 0.97462 0.97003 0.88994 0.90091 0.87023 0.87190 0.75026 0.80532 0.80406 0.81179 0.89564 0.90897 0.91326 0.94346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.83 10.44 21.65 0.23 -57.61 16 2 C -0.07 -3.93 5.49 84.86 0.47 -3.47 16 3 Si 0.97 46.95 29.55 68.60 2.03 48.97 16 4 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 5 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 6 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 7 C -0.23 -13.02 9.86 84.04 0.83 -12.19 16 8 H 0.08 4.35 7.18 -2.91 -0.02 4.33 16 9 N -0.62 -31.53 3.35 -669.73 -2.24 -33.77 16 10 C 0.18 8.63 5.45 86.83 0.47 9.11 16 11 C -0.11 -3.73 6.53 31.63 0.21 -3.52 16 12 C -0.11 -3.62 2.84 -9.99 -0.03 -3.65 16 13 H 0.05 1.97 8.12 -2.39 -0.02 1.95 16 14 C 0.13 2.85 5.36 85.66 0.46 3.30 16 15 N -0.60 -17.86 3.01 -819.26 -2.47 -20.33 16 16 C 0.59 19.78 7.57 86.52 0.65 20.43 16 17 O -0.59 -25.15 16.46 -4.23 -0.07 -25.22 16 18 C -0.26 -6.94 5.29 -18.99 -0.10 -7.04 16 19 C 0.15 2.08 9.41 83.74 0.79 2.87 16 20 N -0.55 -5.41 5.98 -187.01 -1.12 -6.53 16 21 H 0.45 0.22 8.96 -92.71 -0.83 -0.61 16 22 C 0.03 0.54 7.27 38.98 0.28 0.82 16 23 C -0.07 -0.84 10.19 22.53 0.23 -0.61 16 24 C -0.16 -2.15 10.09 22.38 0.23 -1.92 16 25 C 0.08 1.81 11.16 84.81 0.95 2.76 16 26 N -0.51 -16.33 10.41 -184.62 -1.92 -18.25 16 27 C 0.09 2.60 7.51 41.98 0.32 2.92 16 28 C 0.13 4.10 6.31 86.68 0.55 4.65 16 29 C -0.12 -4.58 5.45 30.42 0.17 -4.41 16 30 C 0.16 6.23 2.57 45.50 0.12 6.34 16 31 H 0.03 1.28 7.93 -2.38 -0.02 1.27 16 32 H 0.24 14.54 8.31 -92.71 -0.77 13.77 16 33 H 0.01 0.38 7.77 -2.39 -0.02 0.36 16 34 H 0.01 0.65 7.21 -2.39 -0.02 0.63 16 35 H 0.09 2.43 8.11 -2.39 -0.02 2.41 16 36 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.11 1.94 4.64 -2.38 -0.01 1.93 16 38 H 0.11 1.84 8.08 -2.39 -0.02 1.82 16 39 H 0.23 0.90 7.50 -2.91 -0.02 0.88 16 40 H 0.18 0.61 8.06 -2.91 -0.02 0.58 16 41 H 0.18 0.98 8.06 -2.91 -0.02 0.96 16 42 H 0.17 2.92 8.06 -2.91 -0.02 2.89 16 43 H 0.09 2.34 8.14 -2.38 -0.02 2.33 16 44 H 0.07 2.56 6.98 -2.39 -0.02 2.55 16 45 H 0.07 2.65 7.59 -2.39 -0.02 2.63 16 46 H 0.04 1.64 8.11 -2.39 -0.02 1.62 16 Total: -1.00 -91.39 365.86 1.20 -90.20 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: 0.19 Total: 6.16 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: 6.58 Total: 16.39 kcal Atomic # 7 Polarization: -128.96 SS G_CDS: -7.53 Total: -136.49 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.07 Total: -25.22 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.97 kcal Total: -91.39 1.20 -90.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036869842.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.021 kcal (2) G-P(sol) polarization free energy of solvation -91.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds