Wall clock time and date at job start Tue Mar 31 2020 23:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00086 * 2 1 4 4 H 1.48497 * 109.47051 * 239.99526 * 3 2 1 5 5 H 1.48500 * 109.47305 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47195 * 120.00004 * 3 2 1 7 7 C 1.38813 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00012 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99725 * 359.97438 * 7 2 1 10 10 C 1.47819 * 125.94539 * 359.91953 * 9 7 2 11 11 C 1.55099 * 104.89287 * 201.58039 * 10 9 7 12 12 C 1.56122 * 101.11722 * 322.99290 * 11 10 9 13 13 H 1.09005 * 112.18694 * 157.72190 * 12 11 10 14 14 C 1.53107 * 106.64066 * 281.13087 * 12 11 10 15 15 N 1.45048 * 110.00701 * 158.89829 * 14 12 11 16 16 C 1.34782 * 120.58981 * 121.71206 * 15 14 12 17 17 O 1.21664 * 120.00184 * 355.08544 * 16 15 14 18 18 C 1.46924 * 119.99748 * 175.08276 * 16 15 14 19 19 C 1.36357 * 126.83222 * 320.32416 * 18 16 15 20 20 N 1.35566 * 109.75269 * 179.82946 * 19 18 16 21 21 H 0.97002 * 124.72586 * 180.18131 * 20 19 18 22 22 C 1.37696 * 110.56152 * 0.45296 * 20 19 18 23 23 N 1.32679 * 132.95144 * 179.70408 * 22 20 19 24 24 C 1.31608 * 121.68906 * 180.02562 * 23 22 20 25 25 C 1.38588 * 121.54489 * 359.97438 * 24 23 22 26 26 C 1.38337 * 119.32399 * 0.03911 * 25 24 23 27 27 C 1.39350 * 118.05521 * 359.96222 * 26 25 24 28 28 C 1.46526 * 118.43294 * 302.26658 * 15 14 12 29 29 C 1.51790 * 110.13256 * 53.19410 * 28 15 14 30 30 C 1.46259 * 125.96019 * 179.97438 * 9 7 2 31 31 H 1.08994 * 105.49855 * 70.57399 * 30 9 7 32 32 H 0.97007 * 119.99900 * 0.02562 * 1 2 3 33 33 H 1.09003 * 110.33220 * 82.74139 * 10 9 7 34 34 H 1.08999 * 110.39188 * 320.44700 * 10 9 7 35 35 H 1.08999 * 111.10052 * 205.01820 * 11 10 9 36 36 H 1.09003 * 111.09834 * 80.96409 * 11 10 9 37 37 H 1.08998 * 109.53341 * 279.95329 * 14 12 11 38 38 H 1.08996 * 109.53013 * 40.17286 * 14 12 11 39 39 H 1.08007 * 125.11984 * 359.97438 * 19 18 16 40 40 H 1.07999 * 119.22768 * 179.97438 * 24 23 22 41 41 H 1.07997 * 120.33653 * 180.02562 * 25 24 23 42 42 H 1.07997 * 120.97241 * 179.97438 * 26 25 24 43 43 H 1.08997 * 109.36149 * 292.99355 * 28 15 14 44 44 H 1.09000 * 109.36245 * 173.39220 * 28 15 14 45 45 H 1.08996 * 108.36211 * 196.93440 * 29 28 15 46 46 H 1.09005 * 108.22392 * 79.73546 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 -0.1447 -2.5411 0.0040 11 6 -0.3960 -3.9687 0.5556 12 6 0.7953 -4.7515 -0.0811 13 1 1.0311 -5.6619 0.4700 14 6 0.4068 -5.0348 -1.5348 15 7 1.5952 -5.2976 -2.3238 16 6 1.7355 -6.4638 -2.9848 17 8 0.9043 -7.3423 -2.8518 18 6 2.8921 -6.6741 -3.8661 19 6 3.4553 -5.7609 -4.7076 20 7 4.5071 -6.3211 -5.3540 21 1 5.0651 -5.8631 -6.0019 22 6 4.6694 -7.6327 -4.9674 23 7 5.5347 -8.5769 -5.3141 24 6 5.4858 -9.7845 -4.7932 25 6 4.5268 -10.1309 -3.8545 26 6 3.5978 -9.1869 -3.4549 27 6 3.6703 -7.9156 -4.0208 28 6 2.6405 -4.2721 -2.3736 29 6 3.0496 -3.8743 -0.9671 30 6 1.9213 -3.7238 0.0017 31 1 2.3597 -3.8470 0.9920 32 1 -0.4850 0.8401 -0.0004 33 1 -0.5364 -2.4518 -1.0093 34 1 -0.6030 -1.7969 0.6553 35 1 -1.3525 -4.3604 0.2096 36 1 -0.3388 -3.9845 1.6440 37 1 -0.2635 -5.8934 -1.5721 38 1 -0.0932 -4.1622 -1.9549 39 1 3.1161 -4.7438 -4.8377 40 1 6.2099 -10.5228 -5.1045 41 1 4.5049 -11.1276 -3.4393 42 1 2.8388 -9.4282 -2.7255 43 1 2.2627 -3.3964 -2.9013 44 1 3.5075 -4.6653 -2.9045 45 1 3.5853 -2.9266 -1.0204 46 1 3.7330 -4.6321 -0.5837 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036897001.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:15 Heat of formation + Delta-G solvation = 59.790598 kcal Electronic energy + Delta-G solvation = -29945.571890 eV Core-core repulsion = 26028.970922 eV Total energy + Delta-G solvation = -3916.600967 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.79187 -41.34700 -39.57740 -38.80811 -36.63112 -34.65331 -33.93444 -33.35399 -31.63500 -31.00888 -30.45768 -29.08568 -27.01245 -25.92366 -24.84964 -24.08651 -23.54393 -23.25286 -21.89591 -20.64160 -19.76430 -19.18380 -18.29675 -18.06433 -17.30003 -17.28438 -16.98815 -16.68291 -16.29956 -16.04307 -15.80440 -15.65831 -15.58618 -15.00704 -14.58486 -14.36716 -14.23624 -14.04474 -13.89062 -13.78633 -13.41048 -13.24703 -13.04371 -12.97924 -12.84711 -12.65928 -12.44481 -12.18034 -11.95805 -11.65504 -11.56666 -11.48102 -11.38531 -11.24407 -11.04120 -10.64052 -10.42513 -9.62230 -9.53364 -9.13442 -8.77228 -7.72629 -5.12715 -0.12768 0.30771 0.98155 1.50079 1.52030 1.58148 1.67166 1.88550 2.25660 2.53553 2.88985 3.38336 3.44392 3.50101 3.65610 3.71564 3.81163 3.85537 4.02176 4.05487 4.13129 4.16530 4.19130 4.29978 4.39370 4.47260 4.54054 4.57946 4.64271 4.76162 4.82861 4.85184 4.92636 4.97888 5.11570 5.17541 5.18910 5.32345 5.34120 5.40654 5.43005 5.54023 5.61826 5.70267 5.82944 5.87755 6.24418 6.34682 6.46919 6.96191 7.16473 7.17259 7.85764 8.52465 9.31914 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018076 B = 0.003017 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.617811 B = 9277.357581 C =10228.812112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.066 4.066 3 Si 0.972 3.028 4 H -0.275 1.275 5 H -0.300 1.300 6 H -0.282 1.282 7 C -0.224 4.224 8 H 0.084 0.916 9 N -0.610 5.610 10 C 0.162 3.838 11 C -0.130 4.130 12 C -0.096 4.096 13 H 0.092 0.908 14 C 0.129 3.871 15 N -0.594 5.594 16 C 0.591 3.409 17 O -0.583 6.583 18 C -0.247 4.247 19 C 0.143 3.857 20 N -0.552 5.552 21 H 0.440 0.560 22 C 0.261 3.739 23 N -0.511 5.511 24 C 0.132 3.868 25 C -0.183 4.183 26 C -0.047 4.047 27 C -0.134 4.134 28 C 0.117 3.883 29 C -0.132 4.132 30 C 0.169 3.831 31 H -0.006 1.006 32 H 0.244 0.756 33 H -0.006 1.006 34 H 0.061 0.939 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.059 0.941 39 H 0.220 0.780 40 H 0.199 0.801 41 H 0.171 0.829 42 H 0.129 0.871 43 H 0.067 0.933 44 H 0.109 0.891 45 H 0.072 0.928 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.337 -16.565 -10.161 22.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.258 4.258 3 Si 0.802 3.198 4 H -0.201 1.201 5 H -0.227 1.227 6 H -0.208 1.208 7 C -0.353 4.353 8 H 0.102 0.898 9 N -0.335 5.335 10 C 0.038 3.962 11 C -0.169 4.169 12 C -0.116 4.116 13 H 0.111 0.889 14 C 0.005 3.995 15 N -0.324 5.324 16 C 0.382 3.618 17 O -0.464 6.464 18 C -0.258 4.258 19 C 0.009 3.991 20 N -0.157 5.157 21 H 0.282 0.718 22 C 0.030 3.970 23 N -0.224 5.224 24 C -0.033 4.033 25 C -0.204 4.204 26 C -0.074 4.074 27 C -0.141 4.141 28 C -0.005 4.005 29 C -0.172 4.172 30 C 0.062 3.938 31 H 0.012 0.988 32 H 0.054 0.946 33 H 0.012 0.988 34 H 0.079 0.921 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.105 0.895 38 H 0.078 0.922 39 H 0.236 0.764 40 H 0.215 0.785 41 H 0.188 0.812 42 H 0.147 0.853 43 H 0.085 0.915 44 H 0.127 0.873 45 H 0.091 0.909 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.594 -16.443 -10.804 22.345 hybrid contribution -0.432 1.387 0.687 1.607 sum 10.162 -15.056 -10.117 20.792 Atomic orbital electron populations 1.70085 1.06175 1.24844 1.58858 1.25513 0.96428 1.00600 1.03290 0.85236 0.77099 0.79362 0.78136 1.20099 1.22668 1.20813 1.19280 0.90964 0.83266 1.41772 0.89803 1.44720 1.02260 1.00279 1.86211 1.21661 0.84394 0.93458 0.96735 1.23156 0.97678 0.96161 0.99879 1.22253 0.95917 0.97416 0.95987 0.88936 1.21173 0.87126 1.01145 0.90024 1.47431 1.20332 1.16761 1.47841 1.17530 0.84354 0.80752 0.79133 1.90724 1.45202 1.43525 1.66986 1.19780 1.02707 0.95204 1.08105 1.22638 0.86311 0.98770 0.91364 1.41313 1.27835 1.08092 1.38497 0.71810 1.18511 0.94827 0.87446 0.96259 1.66587 1.25350 1.01782 1.28679 1.23144 0.97107 0.91045 0.91984 1.22294 0.96122 1.01653 1.00311 1.21218 0.97836 0.91024 0.97310 1.19684 0.98352 0.94936 1.01138 1.21543 0.91007 0.90348 0.97579 1.21137 0.98539 1.01874 0.95638 1.19626 0.92881 0.85356 0.95936 0.98804 0.94627 0.98777 0.92110 0.89750 0.91789 0.89452 0.92230 0.76357 0.78451 0.81160 0.85264 0.91492 0.87269 0.90944 0.91604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.97 10.18 21.65 0.22 -54.75 16 2 C -0.07 -3.57 5.49 84.86 0.47 -3.10 16 3 Si 0.97 43.93 29.55 68.60 2.03 45.96 16 4 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.22 -11.68 9.57 84.03 0.80 -10.88 16 8 H 0.08 4.14 7.01 -2.91 -0.02 4.12 16 9 N -0.61 -29.26 3.30 -678.07 -2.24 -31.50 16 10 C 0.16 7.69 5.35 86.85 0.46 8.16 16 11 C -0.13 -4.77 6.46 32.40 0.21 -4.56 16 12 C -0.10 -3.30 3.72 -9.78 -0.04 -3.34 16 13 H 0.09 2.94 8.14 -2.38 -0.02 2.92 16 14 C 0.13 4.27 5.42 86.69 0.47 4.74 16 15 N -0.59 -18.01 2.93 -831.92 -2.43 -20.44 16 16 C 0.59 18.60 7.59 86.52 0.66 19.25 16 17 O -0.58 -22.15 16.50 -4.23 -0.07 -22.22 16 18 C -0.25 -6.36 5.41 -19.05 -0.10 -6.46 16 19 C 0.14 2.52 9.46 83.68 0.79 3.31 16 20 N -0.55 -8.95 5.97 -191.78 -1.15 -10.09 16 21 H 0.44 4.19 8.96 -92.71 -0.83 3.36 16 22 C 0.26 5.87 8.41 133.76 1.13 6.99 16 23 N -0.51 -10.81 10.39 -192.79 -2.00 -12.82 16 24 C 0.13 2.11 11.14 84.81 0.95 3.05 16 25 C -0.18 -2.98 10.11 22.38 0.23 -2.76 16 26 C -0.05 -1.10 10.21 22.56 0.23 -0.87 16 27 C -0.13 -3.46 6.38 -20.06 -0.13 -3.59 16 28 C 0.12 3.20 5.52 85.98 0.47 3.67 16 29 C -0.13 -4.28 5.59 29.07 0.16 -4.12 16 30 C 0.17 6.56 2.65 43.80 0.12 6.68 16 31 H -0.01 -0.24 8.08 -2.39 -0.02 -0.26 16 32 H 0.24 13.93 8.31 -92.70 -0.77 13.15 16 33 H -0.01 -0.29 7.10 -2.39 -0.02 -0.31 16 34 H 0.06 3.34 6.09 -2.39 -0.01 3.33 16 35 H 0.08 2.71 7.98 -2.39 -0.02 2.69 16 36 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.09 2.91 6.97 -2.39 -0.02 2.90 16 38 H 0.06 2.17 6.49 -2.39 -0.02 2.16 16 39 H 0.22 2.47 7.20 -2.91 -0.02 2.45 16 40 H 0.20 1.51 8.06 -2.91 -0.02 1.49 16 41 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 42 H 0.13 3.15 8.06 -2.91 -0.02 3.13 16 43 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.11 2.30 4.74 -2.39 -0.01 2.29 16 45 H 0.07 2.51 6.60 -2.39 -0.02 2.50 16 46 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 Total: -1.00 -73.57 360.91 1.43 -72.14 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 0.20 Total: 17.53 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: 6.87 Total: 16.20 kcal Atomic # 7 Polarization: -122.00 SS G_CDS: -7.60 Total: -129.61 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.07 Total: -22.22 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -73.57 1.43 -72.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036897001.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.930 kcal (2) G-P(sol) polarization free energy of solvation -73.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds