Wall clock time and date at job start Tue Mar 31 2020 23:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 119.99992 * 2 1 4 4 H 1.48501 * 109.47149 * 269.99923 * 3 2 1 5 5 H 1.48505 * 109.47064 * 29.99650 * 3 2 1 6 6 H 1.48495 * 109.47451 * 149.99526 * 3 2 1 7 7 C 1.38807 * 120.00363 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00337 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00195 * 0.02562 * 7 2 1 10 10 C 1.48164 * 126.40037 * 359.97431 * 9 7 2 11 11 C 1.55291 * 107.04135 * 184.94008 * 10 9 7 12 12 C 1.53738 * 101.84207 * 22.48330 * 11 10 9 13 13 H 1.08997 * 111.30540 * 78.94442 * 12 11 10 14 14 C 1.52666 * 114.68311 * 207.35979 * 12 11 10 15 15 N 1.47720 * 106.13707 * 169.72548 * 14 12 11 16 16 C 1.34779 * 119.68590 * 127.91316 * 15 14 12 17 17 O 1.21664 * 119.99856 * 3.94129 * 16 15 14 18 18 C 1.46929 * 119.99927 * 183.93747 * 16 15 14 19 19 C 1.36349 * 126.82927 * 310.71994 * 18 16 15 20 20 N 1.35580 * 109.74953 * 180.02562 * 19 18 16 21 21 H 0.97007 * 124.71727 * 180.02562 * 20 19 18 22 22 C 1.37693 * 110.56040 * 0.26429 * 20 19 18 23 23 N 1.32671 * 132.94342 * 180.51267 * 22 20 19 24 24 C 1.31605 * 121.69308 * 179.59891 * 23 22 20 25 25 C 1.38581 * 121.53854 * 359.65608 * 24 23 22 26 26 C 1.38340 * 119.33183 * 0.02562 * 25 24 23 27 27 C 1.39347 * 118.05016 * 0.02562 * 26 25 24 28 28 C 1.46595 * 120.62808 * 307.63231 * 15 14 12 29 29 C 1.53953 * 110.58300 * 48.07961 * 28 15 14 30 30 C 1.45469 * 126.41002 * 179.97438 * 9 7 2 31 31 H 1.08998 * 108.78527 * 265.97349 * 30 9 7 32 32 H 0.97003 * 120.00301 * 0.02562 * 1 2 3 33 33 H 1.08994 * 109.91867 * 65.59171 * 10 9 7 34 34 H 1.09003 * 110.08445 * 304.38607 * 10 9 7 35 35 H 1.08991 * 110.95438 * 264.34360 * 11 10 9 36 36 H 1.09000 * 110.94973 * 140.61681 * 11 10 9 37 37 H 1.09000 * 110.21906 * 50.56328 * 14 12 11 38 38 H 1.09002 * 110.13487 * 288.83839 * 14 12 11 39 39 H 1.07997 * 125.12809 * 0.02562 * 19 18 16 40 40 H 1.07996 * 119.23260 * 179.67777 * 24 23 22 41 41 H 1.08001 * 120.33497 * 180.02562 * 25 24 23 42 42 H 1.07998 * 120.97540 * 179.97438 * 26 25 24 43 43 H 1.09003 * 109.25364 * 168.36498 * 28 15 14 44 44 H 1.09001 * 109.25376 * 287.82831 * 28 15 14 45 45 H 1.08995 * 109.87947 * 68.41424 * 29 28 15 46 46 H 1.08996 * 109.87531 * 189.41571 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1467 -2.5534 0.0005 11 6 -0.4340 -4.0741 0.1284 12 6 0.8684 -4.5889 0.7627 13 1 0.8919 -4.3916 1.8344 14 6 1.2021 -6.0438 0.4421 15 7 2.5824 -6.2634 0.9202 16 6 2.8487 -7.3022 1.7366 17 8 1.9699 -8.0948 2.0189 18 6 4.2002 -7.4774 2.2857 19 6 5.3738 -7.4519 1.5920 20 7 6.4120 -7.6519 2.4407 21 1 7.3451 -7.6750 2.1764 22 6 5.9574 -7.8229 3.7291 23 7 6.5740 -8.0343 4.8847 24 6 5.9063 -8.1606 6.0117 25 6 4.5239 -8.0721 6.0491 26 6 3.8273 -7.8461 4.8754 27 6 4.5566 -7.7169 3.6951 28 6 3.6665 -5.3658 0.5101 29 6 3.2476 -3.8950 0.6872 30 6 1.9079 -3.7211 0.0005 31 1 1.9820 -4.0718 -1.0288 32 1 -0.4851 0.8400 -0.0004 33 1 -0.5630 -2.1740 -0.9326 34 1 -0.5832 -2.0206 0.8454 35 1 -0.5949 -4.5241 -0.8512 36 1 -1.2854 -4.2561 0.7841 37 1 1.1469 -6.2148 -0.6330 38 1 0.5151 -6.7100 0.9639 39 1 5.4630 -7.2960 0.5271 40 1 6.4484 -8.3371 6.9289 41 1 3.9956 -8.1783 6.9850 42 1 2.7498 -7.7728 4.8738 43 1 4.5477 -5.5645 1.1201 44 1 3.9064 -5.5471 -0.5376 45 1 3.1541 -3.6613 1.7477 46 1 3.9884 -3.2408 0.2276 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036897002.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:21 Heat of formation + Delta-G solvation = 78.410682 kcal Electronic energy + Delta-G solvation = -29699.102666 eV Core-core repulsion = 25783.309126 eV Total energy + Delta-G solvation = -3915.793540 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.97086 -40.00149 -38.28428 -37.89473 -35.33929 -33.22981 -32.67424 -31.55344 -30.69503 -30.02032 -29.16485 -27.92680 -25.10911 -24.10064 -24.01538 -22.85172 -22.30646 -21.97278 -20.09471 -19.65077 -19.01756 -18.27104 -17.15732 -16.75430 -16.30344 -16.13551 -15.71885 -15.28273 -15.01406 -14.87591 -14.80041 -14.35002 -13.90658 -13.69308 -13.52904 -13.22436 -13.02749 -12.89135 -12.72148 -12.52480 -12.33972 -12.19433 -11.65459 -11.48555 -11.41055 -10.85613 -10.79922 -10.74091 -10.61486 -10.17926 -10.10634 -9.95848 -9.85706 -9.64320 -9.55321 -9.47108 -8.79073 -8.63685 -8.51733 -8.28534 -6.84731 -5.72855 -3.06017 0.68016 1.09641 1.92984 2.39609 2.84165 3.23436 3.38049 3.42930 3.45110 3.68229 4.18899 4.36895 4.42076 4.47834 4.71606 4.91210 4.95122 5.02693 5.03952 5.19124 5.24124 5.32541 5.34577 5.53164 5.55626 5.58481 5.60868 5.80561 5.88333 5.98694 6.03031 6.08260 6.11233 6.15946 6.18501 6.22895 6.36350 6.50037 6.59670 6.61789 6.64598 6.83211 6.89293 7.06780 7.50260 7.54457 7.60773 7.72063 7.80173 8.23227 8.26915 9.18072 9.81784 10.49968 11.39641 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014483 B = 0.002996 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.800798 B = 9344.106691 C =10140.264211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.226 4.226 8 H 0.078 0.922 9 N -0.595 5.595 10 C 0.177 3.823 11 C -0.136 4.136 12 C -0.124 4.124 13 H 0.080 0.920 14 C 0.129 3.871 15 N -0.600 5.600 16 C 0.587 3.413 17 O -0.543 6.543 18 C -0.204 4.204 19 C 0.108 3.892 20 N -0.568 5.568 21 H 0.424 0.576 22 C 0.280 3.720 23 N -0.497 5.497 24 C 0.136 3.864 25 C -0.196 4.196 26 C -0.021 4.021 27 C -0.112 4.112 28 C 0.103 3.897 29 C -0.129 4.129 30 C 0.167 3.833 31 H 0.020 0.980 32 H 0.252 0.748 33 H 0.038 0.962 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.189 0.811 40 H 0.162 0.838 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.083 0.917 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.876 -16.964 5.575 20.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.354 4.354 8 H 0.096 0.904 9 N -0.320 5.320 10 C 0.053 3.947 11 C -0.175 4.175 12 C -0.144 4.144 13 H 0.098 0.902 14 C 0.007 3.993 15 N -0.332 5.332 16 C 0.375 3.625 17 O -0.422 6.422 18 C -0.215 4.215 19 C -0.023 4.023 20 N -0.173 5.173 21 H 0.262 0.738 22 C 0.048 3.952 23 N -0.210 5.210 24 C -0.029 4.029 25 C -0.217 4.217 26 C -0.047 4.047 27 C -0.119 4.119 28 C -0.020 4.020 29 C -0.168 4.168 30 C 0.059 3.941 31 H 0.037 0.963 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.108 0.892 39 H 0.206 0.794 40 H 0.179 0.821 41 H 0.158 0.842 42 H 0.156 0.844 43 H 0.102 0.898 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.387 -17.151 5.595 21.333 hybrid contribution 0.073 1.149 -0.202 1.169 sum 11.459 -16.002 5.393 20.407 Atomic orbital electron populations 1.69935 1.04883 1.25027 1.56992 1.24786 0.95670 0.97615 1.02356 0.86165 0.78596 0.83734 0.77532 1.21652 1.21711 1.20753 1.18980 0.90321 0.82339 1.43743 0.90433 1.44218 1.01666 0.99485 1.86613 1.21522 0.83922 0.88322 1.00952 1.22715 0.95811 0.99639 0.99328 1.22726 0.97785 0.93255 1.00680 0.90179 1.21713 0.81381 0.97049 0.99155 1.48207 1.09987 1.27245 1.47781 1.17300 0.86477 0.80822 0.77910 1.90774 1.47471 1.43627 1.60283 1.19949 0.93062 1.15774 0.92746 1.22133 0.85162 0.98954 0.96082 1.41267 1.09673 1.61961 1.04364 0.73760 1.18308 0.89150 1.01552 0.86213 1.66479 1.41132 1.16763 0.96621 1.22452 0.91615 0.94737 0.94135 1.21939 0.95525 1.05247 0.99020 1.21048 1.00693 0.92793 0.90174 1.19405 0.93219 1.05984 0.93270 1.22005 0.89549 0.90596 0.99840 1.21873 0.99384 0.93470 1.02044 1.20657 0.91134 0.87224 0.95097 0.96256 0.93758 0.94404 0.92762 0.92312 0.92053 0.91181 0.89172 0.79430 0.82058 0.84227 0.84369 0.89848 0.91639 0.91429 0.90642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.72 10.44 55.49 0.58 -26.14 16 2 C -0.01 -0.22 5.49 -17.44 -0.10 -0.32 16 3 Si 0.91 21.74 29.55 -169.99 -5.02 16.72 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.23 -6.05 9.88 -15.06 -0.15 -6.20 16 8 H 0.08 1.99 7.21 -52.49 -0.38 1.61 16 9 N -0.60 -14.58 3.35 -163.06 -0.55 -15.13 16 10 C 0.18 4.21 5.45 -1.91 -0.01 4.19 16 11 C -0.14 -2.48 6.54 -25.13 -0.16 -2.65 16 12 C -0.12 -2.17 2.87 -89.14 -0.26 -2.43 16 13 H 0.08 1.54 8.12 -51.93 -0.42 1.11 16 14 C 0.13 1.92 5.97 -3.54 -0.02 1.90 16 15 N -0.60 -8.48 2.99 -173.68 -0.52 -9.00 16 16 C 0.59 8.81 7.57 -12.74 -0.10 8.71 16 17 O -0.54 -9.83 16.48 5.22 0.09 -9.74 16 18 C -0.20 -2.60 5.25 -103.36 -0.54 -3.14 16 19 C 0.11 0.96 9.44 -16.58 -0.16 0.81 16 20 N -0.57 -4.95 5.97 -11.97 -0.07 -5.02 16 21 H 0.42 2.35 8.96 -40.82 -0.37 1.98 16 22 C 0.28 3.33 8.41 -155.53 -1.31 2.02 16 23 N -0.50 -5.80 10.39 -12.29 -0.13 -5.93 16 24 C 0.14 1.29 11.14 -17.52 -0.20 1.09 16 25 C -0.20 -1.85 10.10 -39.42 -0.40 -2.25 16 26 C -0.02 -0.25 10.21 -39.13 -0.40 -0.65 16 27 C -0.11 -1.47 6.38 -104.93 -0.67 -2.14 16 28 C 0.10 1.28 5.57 -3.49 -0.02 1.26 16 29 C -0.13 -2.11 5.48 -26.97 -0.15 -2.25 16 30 C 0.17 3.23 2.55 -67.96 -0.17 3.06 16 31 H 0.02 0.39 7.94 -51.93 -0.41 -0.02 16 32 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 33 H 0.04 0.98 7.77 -51.93 -0.40 0.58 16 34 H 0.05 1.44 7.21 -51.93 -0.37 1.07 16 35 H 0.06 0.98 8.11 -51.93 -0.42 0.56 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 38 H 0.09 1.39 7.02 -51.93 -0.36 1.03 16 39 H 0.19 1.02 7.50 -52.49 -0.39 0.62 16 40 H 0.16 0.97 8.06 -52.49 -0.42 0.54 16 41 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 42 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 43 H 0.08 0.88 4.68 -51.93 -0.24 0.64 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.07 1.21 8.12 -51.93 -0.42 0.79 16 46 H 0.08 1.24 7.62 -51.93 -0.40 0.84 16 LS Contribution 365.93 15.07 5.51 5.51 Total: -1.00 -34.52 365.93 -11.18 -45.70 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -6.27 Total: 1.98 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -4.80 Total: 1.04 kcal Atomic # 7 Polarization: -60.52 SS G_CDS: -0.69 Total: -61.21 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.52 -11.18 -45.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036897002.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.109 kcal (2) G-P(sol) polarization free energy of solvation -34.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds