Wall clock time and date at job start Tue Mar 31 2020 23:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 119.99782 * 2 1 4 4 H 1.48503 * 109.46985 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46795 * 299.99451 * 3 2 1 6 6 H 1.48498 * 109.47316 * 59.99530 * 3 2 1 7 7 C 1.38804 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00017 * 195.58080 * 7 2 1 9 9 N 1.36937 * 120.00125 * 15.57974 * 7 2 1 10 10 C 1.44788 * 120.17872 * 206.48076 * 9 7 2 11 11 C 1.51511 * 112.22123 * 264.82890 * 10 9 7 12 12 C 1.51311 * 113.24998 * 285.36670 * 11 10 9 13 13 H 1.09006 * 111.31403 * 185.23523 * 12 11 10 14 14 C 1.54722 * 106.48584 * 307.66281 * 12 11 10 15 15 C 1.54233 * 104.37047 * 89.11599 * 14 12 11 16 16 C 1.50863 * 105.27830 * 11.56951 * 15 14 12 17 17 H 1.08998 * 105.90517 * 122.19859 * 16 15 14 18 18 C 1.49814 * 120.18085 * 26.75397 * 9 7 2 19 19 N 1.48059 * 109.90718 * 7.86270 * 16 15 14 20 20 C 1.34779 * 127.83946 * 155.16135 * 19 16 15 21 21 O 1.21788 * 120.00159 * 185.27173 * 20 19 16 22 22 C 1.41701 * 119.99993 * 5.27610 * 20 19 16 23 23 C 1.39186 * 125.87282 * 356.01234 * 22 20 19 24 24 C 1.38088 * 107.67764 * 179.97438 * 23 22 20 25 25 C 1.39509 * 107.56636 * 0.02562 * 24 23 22 26 26 C 1.40620 * 132.41573 * 179.97438 * 25 24 23 27 27 C 1.36294 * 119.15951 * 179.97438 * 26 25 24 28 28 C 1.39967 * 120.03999 * 0.02562 * 27 26 25 29 29 N 1.30646 * 120.99302 * 359.97438 * 28 27 26 30 30 N 1.37157 * 108.20172 * 359.75689 * 25 24 23 31 31 H 0.97008 * 120.00242 * 0.02562 * 1 2 3 32 32 H 1.09000 * 108.93594 * 25.53511 * 10 9 7 33 33 H 1.09000 * 108.93254 * 144.11914 * 10 9 7 34 34 H 1.08995 * 108.72933 * 164.39517 * 11 10 9 35 35 H 1.08997 * 108.63178 * 46.27019 * 11 10 9 36 36 H 1.08998 * 110.45279 * 207.83995 * 14 12 11 37 37 H 1.09005 * 110.44751 * 330.26657 * 14 12 11 38 38 H 1.09000 * 110.27938 * 252.61331 * 15 14 12 39 39 H 1.08996 * 110.28098 * 130.52037 * 15 14 12 40 40 H 1.09005 * 109.54527 * 270.28400 * 18 9 7 41 41 H 1.09001 * 109.54424 * 30.55641 * 18 9 7 42 42 H 1.07994 * 126.16449 * 359.97438 * 23 22 20 43 43 H 1.08001 * 126.21904 * 180.02562 * 24 23 22 44 44 H 1.08001 * 120.41966 * 0.02700 * 26 25 24 45 45 H 1.08006 * 119.97892 * 180.02562 * 27 26 25 46 46 H 1.08006 * 119.50193 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3966 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0605 -1.2191 0.2518 9 7 1.3633 -2.3664 -0.3174 10 6 1.8421 -3.6303 0.2019 11 6 2.7585 -4.3403 -0.7736 12 6 2.0220 -4.9658 -1.9380 13 1 2.6968 -5.5444 -2.5689 14 6 0.9011 -5.8415 -1.3291 15 6 -0.3014 -4.8852 -1.1946 16 6 0.0816 -3.6526 -1.9756 17 1 -0.6934 -3.5249 -2.7313 18 6 0.1600 -2.3400 -1.2095 19 7 1.3424 -3.8946 -2.7131 20 6 1.7757 -3.2828 -3.8331 21 8 2.7973 -3.6613 -4.3775 22 6 1.0427 -2.1990 -4.3772 23 6 -0.1747 -1.7183 -3.9037 24 6 -0.5489 -0.6598 -4.7077 25 6 0.4428 -0.4947 -5.6750 26 6 0.5881 0.4130 -6.7391 27 6 1.6906 0.3308 -7.5362 28 6 2.6606 -0.6481 -7.2918 29 7 2.5295 -1.4933 -6.3042 30 7 1.4136 -1.4392 -5.4589 31 1 -0.4851 0.8401 -0.0004 32 1 2.3853 -3.4486 1.1292 33 1 0.9870 -4.2718 0.4149 34 1 3.2987 -5.1225 -0.2404 35 1 3.4792 -3.6204 -1.1615 36 1 0.6579 -6.6677 -1.9971 37 1 1.2013 -6.2189 -0.3515 38 1 -0.4679 -4.6325 -0.1474 39 1 -1.1954 -5.3400 -1.6211 40 1 -0.7390 -2.2159 -0.6056 41 1 0.2456 -1.5117 -1.9129 42 1 -0.7271 -2.1036 -3.0595 43 1 -1.4462 -0.0675 -4.6063 44 1 -0.1640 1.1662 -6.9219 45 1 1.8158 1.0216 -8.3570 46 1 3.5307 -0.7056 -7.9291 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039449365.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:35 Heat of formation + Delta-G solvation = 147.540915 kcal Electronic energy + Delta-G solvation = -31628.140829 eV Core-core repulsion = 27715.345001 eV Total energy + Delta-G solvation = -3912.795828 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.83604 -40.23316 -37.77113 -36.92250 -34.51454 -33.15125 -33.07209 -31.25394 -31.11588 -29.99732 -28.55515 -27.12143 -25.82121 -24.73266 -23.94059 -22.96136 -21.46268 -21.34620 -20.59762 -19.47154 -18.73850 -17.54984 -17.18401 -16.27317 -16.14622 -15.64608 -15.51176 -15.37462 -15.07838 -14.68834 -14.14248 -13.83692 -13.47552 -13.38298 -13.20467 -13.03936 -12.74224 -12.50042 -12.39815 -12.14539 -11.96477 -11.83498 -11.58520 -11.32239 -11.14036 -10.84301 -10.68764 -10.66352 -10.59357 -10.38308 -10.35555 -10.19002 -10.00429 -9.76827 -9.41963 -9.25027 -8.62286 -8.40752 -8.04465 -7.48869 -6.63961 -5.74821 -3.15347 0.59048 1.18326 2.07941 2.57377 3.38222 3.38748 3.45379 3.46464 3.50013 3.96774 4.40692 4.53117 4.55358 4.68682 4.82531 4.93033 4.96659 5.21123 5.33761 5.37882 5.40002 5.47562 5.51833 5.64807 5.72959 5.76221 5.78070 5.85724 5.95092 6.01107 6.07988 6.14745 6.20388 6.29041 6.38041 6.41893 6.50619 6.54276 6.63302 6.72684 6.86835 6.90476 6.97495 7.09918 7.32482 7.45962 7.81351 7.85403 8.13692 8.45242 8.74804 9.22124 9.89619 10.42659 11.33843 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009430 B = 0.006163 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2968.509980 B = 4542.514863 C = 6229.871963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.008 3.992 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.245 4.245 8 H 0.062 0.938 9 N -0.585 5.585 10 C 0.147 3.853 11 C -0.158 4.158 12 C 0.146 3.854 13 H 0.085 0.915 14 C -0.126 4.126 15 C -0.119 4.119 16 C 0.095 3.905 17 H 0.063 0.937 18 C 0.154 3.846 19 N -0.587 5.587 20 C 0.612 3.388 21 O -0.549 6.549 22 C -0.007 4.007 23 C -0.115 4.115 24 C -0.166 4.166 25 C -0.007 4.007 26 C -0.012 4.012 27 C -0.207 4.207 28 C 0.115 3.885 29 N -0.242 5.242 30 N -0.219 5.219 31 H 0.251 0.749 32 H 0.046 0.954 33 H 0.043 0.957 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.081 0.919 42 H 0.188 0.812 43 H 0.155 0.845 44 H 0.152 0.848 45 H 0.146 0.854 46 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.728 -4.753 -10.780 12.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.190 4.190 3 Si 0.723 3.277 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.375 4.375 8 H 0.079 0.921 9 N -0.308 5.308 10 C 0.020 3.980 11 C -0.199 4.199 12 C 0.043 3.957 13 H 0.103 0.897 14 C -0.164 4.164 15 C -0.157 4.157 16 C -0.009 4.009 17 H 0.081 0.919 18 C 0.029 3.971 19 N -0.320 5.320 20 C 0.403 3.597 21 O -0.428 6.428 22 C -0.125 4.125 23 C -0.139 4.139 24 C -0.192 4.192 25 C -0.118 4.118 26 C -0.039 4.039 27 C -0.230 4.230 28 C -0.078 4.078 29 N -0.050 5.050 30 N 0.019 4.981 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.108 0.892 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.099 0.901 42 H 0.204 0.796 43 H 0.172 0.828 44 H 0.170 0.830 45 H 0.163 0.837 46 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -2.470 -5.635 -10.856 12.478 hybrid contribution 0.191 1.945 -0.433 2.002 sum -2.278 -3.690 -11.288 12.093 Atomic orbital electron populations 1.69972 1.04933 1.25099 1.54866 1.24889 0.95258 0.97830 1.01042 0.86363 0.79563 0.84614 0.77163 1.20508 1.21756 1.21695 1.19124 0.92127 0.84889 1.41372 0.92059 1.44006 1.31773 1.01425 1.53548 1.20274 0.95662 0.88230 0.93861 1.22163 1.00389 0.99961 0.97434 1.21652 0.94309 0.87880 0.91896 0.89730 1.22603 0.95220 0.97353 1.01223 1.21873 0.97622 0.94335 1.01841 1.22098 0.85521 0.97840 0.95428 0.91894 1.21969 0.91295 0.91384 0.92430 1.48498 1.21875 1.37804 1.23850 1.14962 0.84153 0.81303 0.79291 1.90831 1.25434 1.65936 1.60648 1.18858 0.98992 1.01192 0.93476 1.22526 0.94413 0.96975 0.99988 1.21071 1.00078 1.01719 0.96344 1.19424 0.93744 0.96700 1.01916 1.20872 0.97417 0.95255 0.90362 1.21361 0.95911 1.02231 1.03527 1.24040 0.99325 0.90924 0.93477 1.76092 1.03065 1.22584 1.03231 1.45341 1.12186 1.21400 1.19168 0.93847 0.93578 0.93886 0.92428 0.92111 0.91778 0.89934 0.89218 0.91208 0.92629 0.90116 0.79583 0.82776 0.82989 0.83661 0.79252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.11 11.18 55.49 0.62 -24.49 16 2 C 0.01 0.23 5.03 -17.43 -0.09 0.14 16 3 Si 0.89 22.38 29.58 -169.99 -5.03 17.35 16 4 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 7 C -0.25 -6.76 9.56 -15.06 -0.14 -6.90 16 8 H 0.06 1.73 7.88 -52.48 -0.41 1.32 16 9 N -0.58 -14.10 2.89 -173.21 -0.50 -14.60 16 10 C 0.15 2.97 5.34 -5.71 -0.03 2.94 16 11 C -0.16 -2.93 5.01 -28.34 -0.14 -3.07 16 12 C 0.15 2.53 3.86 -66.68 -0.26 2.27 16 13 H 0.08 1.49 7.97 -51.93 -0.41 1.08 16 14 C -0.13 -1.69 6.01 -25.18 -0.15 -1.84 16 15 C -0.12 -1.69 5.78 -27.16 -0.16 -1.85 16 16 C 0.10 1.68 1.94 -68.56 -0.13 1.55 16 17 H 0.06 1.03 5.49 -51.93 -0.29 0.74 16 18 C 0.15 3.37 3.54 -2.61 -0.01 3.36 16 19 N -0.59 -11.54 2.62 -160.71 -0.42 -11.96 16 20 C 0.61 13.67 7.67 -14.94 -0.11 13.55 16 21 O -0.55 -13.65 16.81 5.11 0.09 -13.56 16 22 C -0.01 -0.16 6.80 -83.75 -0.57 -0.73 16 23 C -0.12 -2.15 7.23 -39.28 -0.28 -2.43 16 24 C -0.17 -2.74 10.92 -39.16 -0.43 -3.17 16 25 C -0.01 -0.12 6.80 -84.11 -0.57 -0.69 16 26 C -0.01 -0.15 10.11 -39.38 -0.40 -0.55 16 27 C -0.21 -2.23 10.04 -39.63 -0.40 -2.62 16 28 C 0.12 1.48 11.29 -17.41 -0.20 1.29 16 29 N -0.24 -4.50 11.32 30.61 0.35 -4.15 16 30 N -0.22 -4.36 4.01 -8.28 -0.03 -4.39 16 31 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 32 H 0.05 0.96 7.97 -51.93 -0.41 0.54 16 33 H 0.04 0.77 3.93 -51.93 -0.20 0.57 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.99 7.39 -51.93 -0.38 0.60 16 38 H 0.09 1.32 6.15 -51.93 -0.32 1.00 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.06 1.30 7.59 -51.93 -0.39 0.90 16 41 H 0.08 1.96 4.29 -51.93 -0.22 1.73 16 42 H 0.19 3.33 3.25 -52.49 -0.17 3.16 16 43 H 0.15 2.04 8.06 -52.49 -0.42 1.62 16 44 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 45 H 0.15 0.96 8.06 -52.48 -0.42 0.54 16 46 H 0.19 1.59 8.06 -52.48 -0.42 1.16 16 LS Contribution 351.68 15.07 5.30 5.30 Total: -1.00 -35.82 351.68 -9.44 -45.26 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -5.74 Total: 4.00 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -4.07 Total: 1.25 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: 0.01 Total: -59.60 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: 0.09 Total: -13.56 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.03 Total: 17.35 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.82 -9.44 -45.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039449365.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.800 kcal (2) G-P(sol) polarization free energy of solvation -35.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds