Wall clock time and date at job start Tue Mar 31 2020 23:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 119.99876 * 2 1 4 4 H 1.48499 * 109.47244 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47169 * 299.99731 * 3 2 1 6 6 H 1.48496 * 109.47490 * 59.99742 * 3 2 1 7 7 C 1.38811 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00024 * 189.52973 * 7 2 1 9 9 N 1.37074 * 120.00223 * 9.26088 * 7 2 1 10 10 C 1.44796 * 120.11381 * 209.90866 * 9 7 2 11 11 C 1.51418 * 113.12962 * 268.00796 * 10 9 7 12 12 C 1.51197 * 114.23681 * 296.22980 * 11 10 9 13 13 H 1.09744 * 110.69582 * 178.57014 * 12 11 10 14 14 C 1.54111 * 108.49724 * 300.50262 * 12 11 10 15 15 C 1.53998 * 104.84985 * 92.99447 * 14 12 11 16 16 C 1.52094 * 105.54932 * 11.19360 * 15 14 12 17 17 H 1.09415 * 108.25559 * 123.44726 * 16 15 14 18 18 C 1.49310 * 120.09167 * 29.55421 * 9 7 2 19 19 N 1.47754 * 109.48722 * 5.69553 * 16 15 14 20 20 C 1.34989 * 127.10765 * 158.53085 * 19 16 15 21 21 O 1.21676 * 119.99906 * 185.18719 * 20 19 16 22 22 C 1.46929 * 120.00301 * 5.18963 * 20 19 16 23 23 C 1.36475 * 126.72449 * 354.66252 * 22 20 19 24 24 N 1.35363 * 109.77403 * 179.97438 * 23 22 20 25 25 H 0.97004 * 124.82468 * 180.02562 * 24 23 22 26 26 C 1.37858 * 110.35181 * 359.97438 * 24 23 22 27 27 C 1.39224 * 133.47963 * 180.02562 * 26 24 23 28 28 C 1.38331 * 118.30268 * 179.97438 * 27 26 24 29 29 C 1.38604 * 119.64067 * 359.97438 * 28 27 26 30 30 N 1.31628 * 121.19351 * 0.02562 * 29 28 27 31 31 C 1.32696 * 121.42523 * 359.71738 * 30 29 28 32 32 H 0.96992 * 120.00359 * 0.02562 * 1 2 3 33 33 H 1.09310 * 108.47630 * 28.58445 * 10 9 7 34 34 H 1.08925 * 109.06795 * 146.22098 * 10 9 7 35 35 H 1.09350 * 108.48872 * 175.07664 * 11 10 9 36 36 H 1.09169 * 108.76674 * 57.98138 * 11 10 9 37 37 H 1.09294 * 110.73228 * 333.67222 * 14 12 11 38 38 H 1.09369 * 110.55861 * 212.05298 * 14 12 11 39 39 H 1.09032 * 110.66401 * 251.53550 * 15 14 12 40 40 H 1.09312 * 110.21381 * 130.06943 * 15 14 12 41 41 H 1.09151 * 109.44074 * 254.36074 * 18 9 7 42 42 H 1.09088 * 109.60097 * 14.11332 * 18 9 7 43 43 H 1.07992 * 125.11674 * 359.97438 * 23 22 20 44 44 H 1.08003 * 120.84874 * 0.02562 * 27 26 24 45 45 H 1.08003 * 120.18226 * 179.97438 * 28 27 26 46 46 H 1.07997 * 119.40362 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0790 -1.2085 0.1554 9 7 1.3383 -2.3816 -0.1900 10 6 1.8293 -3.6030 0.4131 11 6 2.7592 -4.3818 -0.4933 12 6 2.1084 -4.8930 -1.7587 13 1 2.8379 -5.4251 -2.3823 14 6 0.9396 -5.8183 -1.3680 15 6 -0.2974 -4.9014 -1.3399 16 6 0.1492 -3.5946 -1.9774 17 1 -0.5130 -3.3813 -2.8218 18 6 0.0933 -2.4093 -1.0136 19 7 1.5247 -3.7440 -2.4959 20 6 2.1212 -2.9974 -3.4494 21 8 3.2325 -3.2931 -3.8470 22 6 1.4285 -1.8278 -4.0071 23 6 0.1502 -1.4320 -3.7392 24 7 -0.1376 -0.3094 -4.4386 25 1 -0.9871 0.1583 -4.4106 26 6 0.9483 0.0755 -5.1957 27 6 1.1787 1.1322 -6.0724 28 6 2.4185 1.2223 -6.6794 29 6 3.3879 0.2711 -6.4028 30 7 3.1516 -0.7212 -5.5709 31 6 1.9804 -0.8480 -4.9601 32 1 -0.4850 0.8399 -0.0004 33 1 2.3690 -3.3450 1.3280 34 1 0.9821 -4.2318 0.6838 35 1 3.1517 -5.2365 0.0645 36 1 3.6019 -3.7430 -0.7644 37 1 1.1107 -6.2636 -0.3847 38 1 0.8116 -6.6102 -2.1114 39 1 -0.6290 -4.7340 -0.3149 40 1 -1.1097 -5.3450 -1.9214 41 1 -0.7736 -2.5120 -0.3583 42 1 0.0079 -1.4804 -1.5792 43 1 -0.5295 -1.9381 -3.0698 44 1 0.4095 1.8634 -6.2728 45 1 2.6299 2.0295 -7.3651 46 1 4.3546 0.3454 -6.8786 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039460490.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:37 Heat of formation + Delta-G solvation = 91.814724 kcal Electronic energy + Delta-G solvation = -31763.828267 eV Core-core repulsion = 27848.615970 eV Total energy + Delta-G solvation = -3915.212297 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.46292 -39.92450 -37.66753 -37.15008 -34.57391 -33.11902 -32.33314 -31.21462 -31.04143 -29.81158 -28.98670 -27.12466 -25.60978 -24.03843 -23.66652 -22.99988 -22.22853 -20.91056 -20.63003 -19.34678 -18.46384 -17.53833 -16.82357 -16.54643 -16.04363 -15.70868 -15.35295 -15.04681 -14.80424 -14.62276 -14.12302 -13.93435 -13.51722 -13.22651 -13.18260 -12.95238 -12.80160 -12.53584 -12.38500 -12.30728 -12.02167 -11.99910 -11.63409 -11.38193 -11.16183 -10.89338 -10.73905 -10.66747 -10.40832 -10.15091 -10.04871 -9.96516 -9.82178 -9.38391 -9.26442 -8.90988 -8.52184 -8.22009 -7.96330 -7.68070 -6.65805 -5.83734 -3.25598 1.15615 1.55760 2.39635 3.12997 3.34137 3.41846 3.48519 3.55151 3.94760 4.39112 4.47764 4.52238 4.79031 4.88164 4.93056 5.08218 5.12225 5.19661 5.24461 5.36116 5.41562 5.45776 5.67451 5.69438 5.73514 5.76679 5.79312 5.90143 5.96094 6.08761 6.14883 6.23124 6.27707 6.34631 6.45838 6.48124 6.51692 6.64850 6.66827 6.86573 6.91633 7.03779 7.10233 7.27658 7.37648 7.50484 7.80483 8.31644 8.42438 8.44590 9.04732 9.18283 9.83144 10.35761 11.25954 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010059 B = 0.006299 C = 0.004785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.015390 B = 4444.270155 C = 5850.273528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.007 3.993 3 Si 0.895 3.105 4 H -0.277 1.277 5 H -0.292 1.292 6 H -0.290 1.290 7 C -0.232 4.232 8 H 0.061 0.939 9 N -0.578 5.578 10 C 0.159 3.841 11 C -0.154 4.154 12 C 0.149 3.851 13 H 0.080 0.920 14 C -0.124 4.124 15 C -0.118 4.118 16 C 0.090 3.910 17 H 0.060 0.940 18 C 0.149 3.851 19 N -0.589 5.589 20 C 0.621 3.379 21 O -0.542 6.542 22 C -0.202 4.202 23 C 0.123 3.877 24 N -0.573 5.573 25 H 0.420 0.580 26 C 0.034 3.966 27 C -0.081 4.081 28 C -0.167 4.167 29 C 0.089 3.911 30 N -0.432 5.432 31 C 0.144 3.856 32 H 0.250 0.750 33 H 0.043 0.957 34 H 0.033 0.967 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.081 0.919 40 H 0.066 0.934 41 H 0.037 0.963 42 H 0.095 0.905 43 H 0.204 0.796 44 H 0.130 0.870 45 H 0.136 0.864 46 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.466 -4.169 -8.702 11.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.190 4.190 3 Si 0.725 3.275 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.217 1.217 7 C -0.362 4.362 8 H 0.079 0.921 9 N -0.299 5.299 10 C 0.031 3.969 11 C -0.196 4.196 12 C 0.046 3.954 13 H 0.098 0.902 14 C -0.162 4.162 15 C -0.156 4.156 16 C -0.015 4.015 17 H 0.078 0.922 18 C 0.023 3.977 19 N -0.323 5.323 20 C 0.411 3.589 21 O -0.420 6.420 22 C -0.212 4.212 23 C -0.010 4.010 24 N -0.174 5.174 25 H 0.258 0.742 26 C -0.074 4.074 27 C -0.110 4.110 28 C -0.188 4.188 29 C -0.078 4.078 30 N -0.139 5.139 31 C 0.010 3.990 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.051 0.949 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.055 0.945 42 H 0.113 0.887 43 H 0.220 0.780 44 H 0.148 0.852 45 H 0.153 0.847 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -4.366 -4.717 -8.764 10.868 hybrid contribution -0.618 2.059 -0.019 2.150 sum -4.983 -2.657 -8.783 10.442 Atomic orbital electron populations 1.69939 1.04907 1.24869 1.56185 1.24935 0.95372 0.97811 1.00883 0.86304 0.79849 0.84314 0.77007 1.20227 1.21906 1.21699 1.19204 0.90707 0.83882 1.42436 0.92083 1.43773 1.27376 1.03301 1.55486 1.20008 0.95128 0.88259 0.93513 1.22092 1.00981 0.99873 0.96608 1.21442 0.94987 0.86336 0.92613 0.90217 1.22465 0.94735 0.97221 1.01813 1.22037 0.97343 0.94328 1.01919 1.22515 0.83393 0.98176 0.97427 0.92206 1.22006 0.89304 0.94712 0.91702 1.48421 1.14251 1.31987 1.37596 1.16455 0.84491 0.80515 0.77394 1.90760 1.19437 1.70562 1.61226 1.19744 0.94183 1.00699 1.06620 1.23383 0.97433 0.86890 0.93302 1.41415 1.13772 1.24209 1.38041 0.74196 1.19115 0.89817 0.99416 0.99072 1.20438 0.98197 0.96010 0.96318 1.21786 0.93687 1.01237 1.02137 1.22662 0.99279 0.90396 0.95442 1.67105 1.19934 1.21179 1.05714 1.19473 0.88799 0.93944 0.96789 0.94044 0.93844 0.94923 0.92726 0.92263 0.90297 0.91813 0.89998 0.91549 0.94491 0.88676 0.77972 0.85210 0.84660 0.82791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.37 10.95 55.49 0.61 -23.76 16 2 C 0.01 0.19 5.08 -17.43 -0.09 0.10 16 3 Si 0.89 22.36 29.56 -169.99 -5.03 17.33 16 4 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 7 C -0.23 -6.29 9.58 -15.00 -0.14 -6.44 16 8 H 0.06 1.74 7.85 -52.49 -0.41 1.33 16 9 N -0.58 -13.54 2.57 -173.04 -0.44 -13.99 16 10 C 0.16 3.18 5.26 -5.75 -0.03 3.15 16 11 C -0.15 -2.83 5.03 -28.44 -0.14 -2.98 16 12 C 0.15 2.58 3.56 -67.17 -0.24 2.35 16 13 H 0.08 1.42 8.05 -51.51 -0.41 1.00 16 14 C -0.12 -1.64 5.98 -25.63 -0.15 -1.80 16 15 C -0.12 -1.60 5.74 -26.67 -0.15 -1.75 16 16 C 0.09 1.52 2.26 -67.77 -0.15 1.36 16 17 H 0.06 0.89 5.55 -51.69 -0.29 0.60 16 18 C 0.15 3.08 3.93 -2.55 -0.01 3.07 16 19 N -0.59 -11.44 2.29 -158.00 -0.36 -11.81 16 20 C 0.62 14.03 7.85 -12.65 -0.10 13.93 16 21 O -0.54 -13.96 17.28 5.21 0.09 -13.87 16 22 C -0.20 -4.23 6.23 -103.28 -0.64 -4.87 16 23 C 0.12 2.13 8.73 -16.63 -0.15 1.98 16 24 N -0.57 -8.58 5.98 -10.46 -0.06 -8.65 16 25 H 0.42 4.63 8.96 -40.82 -0.37 4.26 16 26 C 0.03 0.57 7.27 -83.94 -0.61 -0.04 16 27 C -0.08 -1.11 10.19 -39.18 -0.40 -1.51 16 28 C -0.17 -2.19 10.09 -39.41 -0.40 -2.58 16 29 C 0.09 1.40 11.16 -17.50 -0.20 1.20 16 30 N -0.43 -8.95 10.41 -9.70 -0.10 -9.05 16 31 C 0.14 3.00 7.36 -82.91 -0.61 2.39 16 32 H 0.25 6.53 8.31 -40.82 -0.34 6.19 16 33 H 0.04 0.91 8.00 -51.75 -0.41 0.49 16 34 H 0.03 0.59 5.64 -51.97 -0.29 0.30 16 35 H 0.05 0.84 8.14 -51.73 -0.42 0.42 16 36 H 0.06 1.30 8.16 -51.83 -0.42 0.87 16 37 H 0.08 0.94 7.68 -51.76 -0.40 0.54 16 38 H 0.06 0.75 8.17 -51.72 -0.42 0.32 16 39 H 0.08 1.13 6.54 -51.91 -0.34 0.79 16 40 H 0.07 0.74 8.17 -51.75 -0.42 0.31 16 41 H 0.04 0.80 7.85 -51.84 -0.41 0.39 16 42 H 0.10 2.13 3.46 -51.88 -0.18 1.95 16 43 H 0.20 3.18 3.33 -52.49 -0.17 3.00 16 44 H 0.13 1.33 8.06 -52.48 -0.42 0.90 16 45 H 0.14 1.24 8.06 -52.48 -0.42 0.82 16 46 H 0.15 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 353.70 15.07 5.33 5.33 Total: -1.00 -35.41 353.70 -9.96 -45.37 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -5.78 Total: 5.52 kcal Atomic # 6 Polarization: 11.78 SS G_CDS: -4.21 Total: 7.56 kcal Atomic # 7 Polarization: -66.89 SS G_CDS: -0.36 Total: -67.25 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: 0.09 Total: -13.87 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.03 Total: 17.33 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.41 -9.96 -45.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039460490.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.188 kcal (2) G-P(sol) polarization free energy of solvation -35.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds