Wall clock time and date at job start Tue Mar 31 2020 23:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00071 * 2 1 4 4 H 1.48500 * 109.47056 * 269.99669 * 3 2 1 5 5 H 1.48498 * 109.47083 * 29.99760 * 3 2 1 6 6 H 1.48498 * 109.47120 * 149.99524 * 3 2 1 7 7 C 1.38817 * 119.99709 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99615 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00348 * 0.02562 * 7 2 1 10 10 C 1.47155 * 125.59640 * 359.97383 * 9 7 2 11 11 C 1.54630 * 107.33844 * 179.05917 * 10 9 7 12 12 C 1.53461 * 102.74871 * 339.34364 * 11 10 9 13 13 C 1.53500 * 111.81568 * 272.83887 * 12 11 10 14 14 C 1.55443 * 101.29552 * 204.12929 * 13 12 11 15 15 N 1.47584 * 104.91186 * 35.63463 * 14 13 12 16 16 C 1.34774 * 125.67336 * 156.08664 * 15 14 13 17 17 O 1.21667 * 119.99544 * 185.15929 * 16 15 14 18 18 C 1.46929 * 120.00317 * 5.17092 * 16 15 14 19 19 C 1.36472 * 126.72883 * 24.51863 * 18 16 15 20 20 N 1.35355 * 109.77948 * 179.97438 * 19 18 16 21 21 H 0.96995 * 124.82813 * 179.97438 * 20 19 18 22 22 C 1.37867 * 110.34799 * 0.02562 * 20 19 18 23 23 C 1.39225 * 133.47831 * 180.02562 * 22 20 19 24 24 C 1.38335 * 118.30031 * 179.97438 * 23 22 20 25 25 C 1.38608 * 119.64055 * 0.27627 * 24 23 22 26 26 N 1.31633 * 121.18884 * 359.39635 * 25 24 23 27 27 C 1.32684 * 121.42971 * 0.63670 * 26 25 24 28 28 C 1.47444 * 108.64345 * 335.82887 * 15 14 13 29 29 C 1.47750 * 125.60107 * 179.97438 * 9 7 2 30 30 H 0.96997 * 120.00312 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.87108 * 59.62622 * 10 9 7 32 32 H 1.08997 * 109.98867 * 298.56825 * 10 9 7 33 33 H 1.09004 * 110.75678 * 221.02082 * 11 10 9 34 34 H 1.09004 * 110.91116 * 97.73000 * 11 10 9 35 35 H 1.09003 * 111.04033 * 322.33931 * 13 12 11 36 36 H 1.09000 * 111.04306 * 86.23639 * 13 12 11 37 37 H 1.08995 * 110.47180 * 276.73977 * 14 13 12 38 38 H 1.09002 * 110.30104 * 154.43909 * 14 13 12 39 39 H 1.08004 * 125.11209 * 359.97438 * 19 18 16 40 40 H 1.08003 * 120.84945 * 359.97361 * 23 22 20 41 41 H 1.07994 * 120.18135 * 180.02562 * 24 23 22 42 42 H 1.08001 * 119.39920 * 179.70506 * 25 24 23 43 43 H 1.09001 * 109.99633 * 121.80059 * 28 15 14 44 44 H 1.09008 * 109.99477 * 243.09019 * 28 15 14 45 45 H 1.09002 * 110.39174 * 83.56900 * 29 9 7 46 46 H 1.09003 * 110.39882 * 321.17107 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1390 -2.5316 0.0005 11 6 -0.4537 -4.0454 -0.0237 12 6 0.8478 -4.6532 -0.5638 13 6 0.8661 -4.6907 -2.0982 14 6 1.8739 -5.8443 -2.3626 15 7 1.6311 -6.8165 -1.2791 16 6 1.9155 -8.1330 -1.3261 17 8 1.5860 -8.8597 -0.4076 18 6 2.6236 -8.6908 -2.4864 19 6 3.4488 -8.0176 -3.3398 20 7 3.9175 -8.8638 -4.2866 21 1 4.5215 -8.6137 -5.0032 22 6 3.4133 -10.1316 -4.0884 23 6 3.5735 -11.3417 -4.7580 24 6 2.9027 -12.4515 -4.2763 25 6 2.0939 -12.3314 -3.1571 26 7 1.9596 -11.1799 -2.5335 27 6 2.5817 -10.0871 -2.9570 28 6 1.0314 -6.1065 -0.1344 29 6 1.9359 -3.7337 0.0005 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5583 -2.0519 -0.8839 32 1 -0.5576 -2.0805 0.9002 33 1 -1.2863 -4.2562 -0.6949 34 1 -0.6653 -4.4149 0.9797 35 1 -0.1204 -4.9294 -2.4957 36 1 1.2336 -3.7501 -2.5084 37 1 2.8980 -5.4739 -2.3165 38 1 1.6791 -6.3018 -3.3326 39 1 3.6915 -6.9675 -3.2703 40 1 4.2052 -11.4122 -5.6311 41 1 3.0054 -13.4055 -4.7719 42 1 1.5682 -13.1993 -2.7872 43 1 0.0655 -6.5470 0.1129 44 1 1.6967 -6.1599 0.7274 45 1 2.1970 -4.0323 1.0158 46 1 2.8176 -3.7509 -0.6400 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041786446.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:14 Heat of formation + Delta-G solvation = 76.507301 kcal Electronic energy + Delta-G solvation = -29149.274722 eV Core-core repulsion = 25233.398645 eV Total energy + Delta-G solvation = -3915.876077 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.99449 -40.04828 -38.33360 -37.93686 -35.56171 -33.15021 -32.65275 -30.80139 -30.21848 -29.78096 -29.32566 -28.16560 -25.67578 -24.28837 -24.13416 -22.99135 -22.63276 -21.88655 -20.22948 -19.29880 -18.79876 -18.06467 -17.20349 -16.91109 -16.49238 -16.17280 -15.89992 -15.27921 -15.06259 -14.77469 -14.66598 -14.25933 -13.86514 -13.71331 -13.53268 -13.24254 -12.96986 -12.83949 -12.63458 -12.56903 -12.32987 -12.29007 -11.94853 -11.48403 -11.24689 -11.15100 -10.87316 -10.77835 -10.58527 -10.18343 -10.00006 -9.94692 -9.82250 -9.72488 -9.64535 -9.43904 -8.81717 -8.59914 -8.54521 -8.35262 -6.82996 -5.71484 -3.04784 0.58584 1.01930 1.78965 2.50925 3.05530 3.30071 3.38443 3.44002 3.46000 3.77191 3.94414 4.27686 4.44192 4.49014 4.60603 4.65815 4.76988 4.85735 4.91771 5.04256 5.18228 5.19527 5.34132 5.35983 5.47744 5.48130 5.59215 5.77322 5.80419 5.85886 5.88307 6.03821 6.04536 6.07973 6.25541 6.29094 6.39427 6.40599 6.53583 6.53824 6.65924 6.74792 6.84924 6.88858 7.56119 7.64297 7.69815 7.83453 7.89375 8.25375 8.42042 9.21785 9.81936 10.48464 11.40006 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026234 B = 0.002340 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.079543 B =11960.467441 C =12617.146079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.910 3.090 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.180 3.820 11 C -0.131 4.131 12 C -0.084 4.084 13 C -0.109 4.109 14 C 0.094 3.906 15 N -0.616 5.616 16 C 0.600 3.400 17 O -0.527 6.527 18 C -0.205 4.205 19 C 0.119 3.881 20 N -0.574 5.574 21 H 0.423 0.577 22 C 0.033 3.967 23 C -0.079 4.079 24 C -0.160 4.160 25 C 0.097 3.903 26 N -0.435 5.435 27 C 0.138 3.862 28 C 0.128 3.872 29 C 0.151 3.849 30 H 0.252 0.748 31 H 0.046 0.954 32 H 0.042 0.958 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.191 0.809 40 H 0.134 0.866 41 H 0.140 0.860 42 H 0.160 0.840 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.021 0.979 46 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.045 -20.719 -13.351 25.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.055 3.945 11 C -0.170 4.170 12 C -0.085 4.085 13 C -0.147 4.147 14 C -0.028 4.028 15 N -0.351 5.351 16 C 0.390 3.610 17 O -0.404 6.404 18 C -0.217 4.217 19 C -0.015 4.015 20 N -0.176 5.176 21 H 0.261 0.739 22 C -0.074 4.074 23 C -0.107 4.107 24 C -0.181 4.181 25 C -0.070 4.070 26 N -0.142 5.142 27 C 0.004 3.996 28 C 0.006 3.994 29 C 0.025 3.975 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.112 0.888 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.208 0.792 40 H 0.152 0.848 41 H 0.158 0.842 42 H 0.177 0.823 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.038 0.962 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 6.369 -20.816 -12.152 24.931 hybrid contribution 1.344 1.045 -1.159 2.060 sum 7.713 -19.771 -13.311 25.051 Atomic orbital electron populations 1.69960 1.04841 1.24979 1.57109 1.24791 0.95698 0.97600 1.02387 0.86142 0.78605 0.83656 0.77488 1.21690 1.21725 1.20760 1.19033 0.90369 0.82416 1.43686 0.90546 1.44567 1.01621 0.99693 1.87219 1.21193 0.84209 0.87982 1.01071 1.22707 0.94879 0.99501 0.99870 1.21579 0.98885 0.92685 0.95392 1.22567 0.98785 0.97989 0.95382 1.22674 0.99668 0.89987 0.90516 1.48516 1.62561 1.06672 1.17317 1.16710 0.78889 0.80029 0.85416 1.90823 1.53341 1.57978 1.38220 1.19902 1.08677 0.91613 1.01479 1.22557 0.94785 0.96305 0.87831 1.41389 1.42240 1.06807 1.27207 0.73904 1.19108 1.01176 0.87134 1.00022 1.20502 1.00798 0.89571 0.99870 1.21897 0.98798 0.98818 0.98595 1.22768 0.96715 0.95040 0.92454 1.67115 1.19913 0.97754 1.29407 1.19473 0.95456 0.92292 0.92393 1.21772 0.98402 0.90768 0.88472 1.21325 0.93485 0.85831 0.96854 0.93782 0.93548 0.93996 0.91867 0.92122 0.90847 0.88794 0.91339 0.90913 0.79201 0.84844 0.84187 0.82324 0.91243 0.91255 0.96156 0.94331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.53 10.30 55.49 0.57 -25.96 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 21.67 29.55 -169.99 -5.02 16.65 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.23 -6.11 10.28 -15.06 -0.15 -6.26 16 8 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16 9 N -0.60 -14.75 3.41 -170.54 -0.58 -15.33 16 10 C 0.18 4.21 5.35 -2.83 -0.02 4.20 16 11 C -0.13 -2.36 5.85 -25.64 -0.15 -2.51 16 12 C -0.08 -1.38 0.61 -154.07 -0.09 -1.47 16 13 C -0.11 -1.55 5.99 -25.17 -0.15 -1.70 16 14 C 0.09 1.10 5.13 -2.15 -0.01 1.09 16 15 N -0.62 -8.99 3.34 -172.18 -0.58 -9.57 16 16 C 0.60 9.89 7.79 -12.74 -0.10 9.79 16 17 O -0.53 -10.84 17.38 5.22 0.09 -10.75 16 18 C -0.21 -2.78 5.94 -103.28 -0.61 -3.39 16 19 C 0.12 1.05 10.04 -16.63 -0.17 0.88 16 20 N -0.57 -4.03 5.98 -10.46 -0.06 -4.09 16 21 H 0.42 1.30 8.96 -40.82 -0.37 0.93 16 22 C 0.03 0.33 7.27 -83.93 -0.61 -0.28 16 23 C -0.08 -0.59 10.19 -39.18 -0.40 -0.98 16 24 C -0.16 -1.18 10.09 -39.41 -0.40 -1.57 16 25 C 0.10 0.98 11.16 -17.50 -0.20 0.78 16 26 N -0.43 -6.37 10.41 -9.70 -0.10 -6.47 16 27 C 0.14 1.91 7.43 -82.92 -0.62 1.30 16 28 C 0.13 2.01 6.14 -3.71 -0.02 1.99 16 29 C 0.15 2.96 6.10 -3.24 -0.02 2.94 16 30 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.05 1.19 7.39 -51.93 -0.38 0.81 16 32 H 0.04 1.11 7.50 -51.93 -0.39 0.72 16 33 H 0.06 1.04 7.80 -51.93 -0.40 0.64 16 34 H 0.06 1.05 8.07 -51.93 -0.42 0.63 16 35 H 0.07 1.00 7.85 -51.93 -0.41 0.60 16 36 H 0.09 1.47 8.00 -51.93 -0.42 1.05 16 37 H 0.07 0.69 7.29 -51.93 -0.38 0.31 16 38 H 0.07 0.70 6.93 -51.93 -0.36 0.34 16 39 H 0.19 1.14 5.80 -52.48 -0.30 0.83 16 40 H 0.13 0.55 8.06 -52.48 -0.42 0.13 16 41 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 42 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 43 H 0.07 1.12 7.89 -51.93 -0.41 0.71 16 44 H 0.07 1.12 7.62 -51.92 -0.40 0.73 16 45 H 0.02 0.42 7.79 -51.93 -0.40 0.01 16 46 H 0.04 0.72 7.96 -51.93 -0.41 0.31 16 LS Contribution 369.68 15.07 5.57 5.57 Total: -1.00 -36.63 369.68 -10.19 -46.82 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -6.26 Total: -1.31 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: -3.81 Total: 4.45 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: -0.75 Total: -61.42 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.63 -10.19 -46.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041786446.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.324 kcal (2) G-P(sol) polarization free energy of solvation -36.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds